Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_008953.1 Length=3935 Score E Sequences producing significant alignments: (Bits) Value seq3 107 5e-20 >seq3 Length=12541198 Score = 107 bits (118), Expect = 5e-20 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 3334 CCCATGAAGCGAGTCTTTCCAACAATCACTCGATGTACTTTTCACAAATACGGTCCTTCG 3393 || ||| ||| |||||||||| |||| |||||| || |||||||||||||| || Sbjct 6788487 CCGATGGCGCGGGTCTTTCCAAAGGTCACGAAATGTACGTTCCACAAATACGGTCCCTCC 6788546 Query 3394 GGCTCCCTGGAAAACTACGAGGGACTCTGCATCCTCCCGGAGAACGTGGTCAACGAGAAG 3453 ||| || | || | ||| ||||| ||| | || ||| ||| | |||||||||||| Sbjct 6788547 GGCGATGTGCAGAAGTTCGACGGACTGTGCGTGCTGCCGTTAAACATTGTCAACGAGAAG 6788606 Query 3454 ATCTACATTTTCCTCTGGTTCTGGTTC 3480 |||||| | ||||| |||||||||||| Sbjct 6788607 ATCTACGTGTTCCTGTGGTTCTGGTTC 6788633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12479346165000