Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq10 297 4e-75 >seq10 Length=19787792 Score = 297 bits (328), Expect = 4e-75 Identities = 513/734 (70%), Gaps = 25/734 (3%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 |||||||||||||| ||||| |||||||| || || ||||| |||| | | || | Sbjct 12208464 CTGGCCTTCTTCGCTGCCTCGGACGGCATTGTTAACGAGAATCTGGTCGAGCGCTTTAGT 12208405 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 | ||||||||| | ||||| || |||||||||||||||||||||||||| ||||| Sbjct 12208404 CAGGAGGTGCAGATCACAGAGGCACGTTGCTTCTACGGCTTCCAGATAGCCATGGAGAAT 12208345 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGAG 42599 |||||||| ||| ||||| | |||||| |||| ||||| | ||| || ||| Sbjct 12208344 GTGCACTCCGAGATGTACAGCG---TGCTCATTGACACCTACATACGGGAGCCGCAGGAG 12208288 Query 42600 CGTAACGGGCTGTTCAAGGCCATGGAGACGATGCC--CTGCATCAAGAAGAAGGCGGACT 42657 || || ||||||| || || ||||| ||||| ||| | ||| |||||||||| Sbjct 12208287 CGCGACTACTTGTTCAATGCTATTGAGACCATGCCGGCTGTA--AAGCGCAAGGCGGACT 12208230 Query 42658 GGGCGCTCAACTGGA-----TCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGC 42712 |||| | ||||| |||| | || | |||| || | |||| | | | || Sbjct 12208229 GGGCCATGTCCTGGATATCCTCGAAA---TCGGC-CAAC-TTTGCCGAGCGTATTATTGC 12208175 Query 42713 CTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAA 42772 |||| | ||||| || || |||||||| ||| ||| ||||| ||||| ||||| || Sbjct 12208174 CTTTGCGGCCGTGGAAGGAATCTTCTTTAGTGGCAGCTTTGCCTCGATCTTTTGGCTGAA 12208115 Query 42773 GCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 | || ||| || |||||||| || |||||||| ||||| || ||| | | ||||| | Sbjct 12208114 GAAGCGTGGTCTC-ATGCCCGGTCTGACCTTCTCCAACGAGCTGATCTCCCGTGACGAAG 12208056 Query 42832 GGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA 42891 | || || | |||||||| ||| || | || ||| || ||| |||| | Sbjct 12208055 GTCTTCACTGCGACTTTGCGGTGCTCATG-TATC--ACCATCTAGTGCAGCGGCCCAAGC 12207999 Query 42892 AGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGC 42951 |||||| || | ||||||| ||| || ||||| |||||| ||||||||||||| Sbjct 12207998 GGGAGCGCATCATCGAGATCATCAGGGATGCTGTGGAAATCGAGCAGGAGTTCCTCACTG 12207939 Query 42952 AGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGT 43011 | | |||||||| || | ||||||||| | ||||||| | |||||||| ||| Sbjct 12207938 AAGCCCTGCCCGTCAATTTGATTGGCATGAACTGTGTTCTCATGTCCCAGTACATCGAGT 12207879 Query 43012 ACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCC 43071 ||| ||||| | || || | || | ||| | | |||||||||| | | Sbjct 12207878 TCGTGGCCGATCGGCTGCTAGGGGAGCTCGGTGTGGGTAAGATCTACAACACTAAGAATC 12207819 Query 43072 CCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCG 43131 | ||| | || ||||||| |||||| |||| || ||||| ||||| || |||||| | Sbjct 12207818 CTTTCAATTTCATGGAGATGATCTCGCTGGACGGAAAGACAAACTTCTTTGAGAAGAAGG 12207759 Query 43132 TCGCCGACTACCAG 43145 | ||||| |||||| Sbjct 12207758 TGGCCGAGTACCAG 12207745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944282657690400