Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq15 134 1e-26 >seq15 Length=6594820 Score = 134 bits (148), Expect = 1e-26 Identities = 463/705 (66%), Gaps = 18/705 (3%) Strand=Plus/Minus Query 20135 GGAAAGGGACGTGGAGTGCGCGTCAGCTGCAGCCGTAGTGGCTCTATATGCGTTTTG-TA 20193 ||||| || || || |||| |||||||| | ||||| || | ||| ||| | || Sbjct 4185982 GGAAACGGCCGCGGCTTGCGTTTCAGCTGCTCCTTCAGTGGATCAACATG-GTTAAGATA 4185924 Query 20194 GATGTGGGCATCTCCCAACGTGTGAATAAACTC-CCCGGGTCTAAGACCAGTAACATGAG 20252 | || || || |||| ||||| ||||| || |||| | ||| ||||| ||||| | Sbjct 4185923 CACATGAGCGTCGCCCATGGTGTGGATAAAGTCGCCCGTCTTCAAG-CCAGTTACATGGG 4185865 Query 20253 CAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGT 20312 | | ||| || || | |||| ||| ||| ||||| || || || || | ||||||| Sbjct 4185864 CTATCATGTAGGTCAGCAGGGCGTAGGAGGCGATGTTGAATGGCACGCCAAGGCCCATGT 4185805 Query 20313 CTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCG----TCAGCTACA--TAAAATT 20366 | | | |||||||| ||| ||||| ||||| ||| || || | | || || | Sbjct 4185804 CGGCGCTGCGCTGATACAACTGGCAGGACAGCTCTCCGCGGGTCTGCGAGACGTAGAACT 4185745 Query 20367 GACATA-ACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCA 20425 | | |||| || ||||||||||| ||||| | | |||| ||| ||||| || Sbjct 4185744 GTGCCAGACAA-TGGCAGGGCGGAAGTGCCATTTTGGGTATGTCCAGCGGATTCCATGCG 4185686 Query 20426 CACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAAT 20485 |||| ||||| | | |||| |||||||| | || || | | | |||| Sbjct 4185685 GACATGATGATCCGACGATCGGACGGATTATGCCTGATGGTGTCAATTACTTGGCGCAAT 4185626 Query 20486 TGGTCAAACCCCTGGCCTGTATAGTCAGCATC-CGCGTCCACGTACGCCGCCCCAAAGTG 20544 ||||| | |||| ||| | |||||| | || | |||| | || | || |||||||| Sbjct 4185625 TGGTCGATGCCCTTGCCGCTGTAGTCATCGTCGCAAGTCC-CATATTCGGCACCAAAGTG 4185567 Query 20545 CCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGCGCCAGGCCGCG 20604 | |||||| || || || || || |||| ||| ||| | | || | |||| | Sbjct 4185566 GCGCCACTGAAAGCCATAGACTGGACCCAGATCTCCCACGGCGCGGTCGGTATGGCCCAG 4185507 Query 20605 CCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGAC-TCCTGTTCTTGAAA 20663 | |||| |||| |||| || ||| ||||| || | || | || | || || Sbjct 4185506 TTTGTCCAGATACTCTCTGGTGCTGTTTCCATCCCAAATGTGCACGTTCTTCGCCTGCAA 4185447 Query 20664 GCTCCCTGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCTTGCACTACGCCTCGCC 20723 | | | | || || | || || |||||||| |||||| | ||| || | || Sbjct 4185446 G-AGCTTCGCATCTGTCTTTCCGCCCACAAACCAAATCAGCTCCTCCACGACCGCGCGAA 4185388 Query 20724 AAAACACCCGCTTTGTGGTTAGTAAGGGAAAGTGGTCCCGCAGA-CTATACCTGGCCTGC 20782 ||||||||| ||| ||||| || |||||||| ||||| | | | || | | ||| Sbjct 4185387 AAAACACCCTCTTGGTGGTCAGCAAGGGAAACGAAAGCCGCATATCGAAACGTAG-CTGA 4185329 Query 20783 ATGCCAAATAGAGAGAGGGTGCCTATGCCGGTGCGGTCGAGTCGA 20827 |||| |||| || |||||||| | |||||| |||| |||| Sbjct 4185328 CTGCCGAATACCGACAGGGTGCCGACATTGGTGCGATCGATTCGA 4185284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441346372803600