Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017
65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters
Query= NC_009333.1
Length=137969
Score E
Sequences producing significant alignments: (Bits) Value
seq15 134 1e-26
>seq15
Length=6594820
Score = 134 bits (148), Expect = 1e-26
Identities = 463/705 (66%), Gaps = 18/705 (3%)
Strand=Plus/Minus
Query 20135 GGAAAGGGACGTGGAGTGCGCGTCAGCTGCAGCCGTAGTGGCTCTATATGCGTTTTG-TA 20193
||||| || || || |||| |||||||| | ||||| || | ||| ||| | ||
Sbjct 4185982 GGAAACGGCCGCGGCTTGCGTTTCAGCTGCTCCTTCAGTGGATCAACATG-GTTAAGATA 4185924
Query 20194 GATGTGGGCATCTCCCAACGTGTGAATAAACTC-CCCGGGTCTAAGACCAGTAACATGAG 20252
| || || || |||| ||||| ||||| || |||| | ||| ||||| ||||| |
Sbjct 4185923 CACATGAGCGTCGCCCATGGTGTGGATAAAGTCGCCCGTCTTCAAG-CCAGTTACATGGG 4185865
Query 20253 CAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGT 20312
| | ||| || || | |||| ||| ||| ||||| || || || || | |||||||
Sbjct 4185864 CTATCATGTAGGTCAGCAGGGCGTAGGAGGCGATGTTGAATGGCACGCCAAGGCCCATGT 4185805
Query 20313 CTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCG----TCAGCTACA--TAAAATT 20366
| | | |||||||| ||| ||||| ||||| ||| || || | | || || |
Sbjct 4185804 CGGCGCTGCGCTGATACAACTGGCAGGACAGCTCTCCGCGGGTCTGCGAGACGTAGAACT 4185745
Query 20367 GACATA-ACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCA 20425
| | |||| || ||||||||||| ||||| | | |||| ||| ||||| ||
Sbjct 4185744 GTGCCAGACAA-TGGCAGGGCGGAAGTGCCATTTTGGGTATGTCCAGCGGATTCCATGCG 4185686
Query 20426 CACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAAT 20485
|||| ||||| | | |||| |||||||| | || || | | | ||||
Sbjct 4185685 GACATGATGATCCGACGATCGGACGGATTATGCCTGATGGTGTCAATTACTTGGCGCAAT 4185626
Query 20486 TGGTCAAACCCCTGGCCTGTATAGTCAGCATC-CGCGTCCACGTACGCCGCCCCAAAGTG 20544
||||| | |||| ||| | |||||| | || | |||| | || | || ||||||||
Sbjct 4185625 TGGTCGATGCCCTTGCCGCTGTAGTCATCGTCGCAAGTCC-CATATTCGGCACCAAAGTG 4185567
Query 20545 CCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGCGCCAGGCCGCG 20604
| |||||| || || || || || |||| ||| ||| | | || | |||| |
Sbjct 4185566 GCGCCACTGAAAGCCATAGACTGGACCCAGATCTCCCACGGCGCGGTCGGTATGGCCCAG 4185507
Query 20605 CCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGAC-TCCTGTTCTTGAAA 20663
| |||| |||| |||| || ||| ||||| || | || | || | || ||
Sbjct 4185506 TTTGTCCAGATACTCTCTGGTGCTGTTTCCATCCCAAATGTGCACGTTCTTCGCCTGCAA 4185447
Query 20664 GCTCCCTGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCTTGCACTACGCCTCGCC 20723
| | | | || || | || || |||||||| |||||| | ||| || | ||
Sbjct 4185446 G-AGCTTCGCATCTGTCTTTCCGCCCACAAACCAAATCAGCTCCTCCACGACCGCGCGAA 4185388
Query 20724 AAAACACCCGCTTTGTGGTTAGTAAGGGAAAGTGGTCCCGCAGA-CTATACCTGGCCTGC 20782
||||||||| ||| ||||| || |||||||| ||||| | | | || | | |||
Sbjct 4185387 AAAACACCCTCTTGGTGGTCAGCAAGGGAAACGAAAGCCGCATATCGAAACGTAG-CTGA 4185329
Query 20783 ATGCCAAATAGAGAGAGGGTGCCTATGCCGGTGCGGTCGAGTCGA 20827
|||| |||| || |||||||| | |||||| |||| ||||
Sbjct 4185328 CTGCCGAATACCGACAGGGTGCCGACATTGGTGCGATCGATTCGA 4185284
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 441346372803600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |