Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq10 145 6e-30 seq4089 105 5e-18 seq1058 104 2e-17 seq2337 95.1 1e-14 seq1918 91.5 1e-13 seq3 86.0 5e-12 >seq10 Length=19787792 Score = 145 bits (160), Expect = 6e-30 Identities = 204/280 (73%), Gaps = 6/280 (2%) Strand=Plus/Minus Query 37831 ACGATCTCTTGTGGAACGCGGCTCAAATTCAGCTTGTGCGCGAGGGTAAGATGCATCAGT 37890 ||||| | |||||||| | || || | ||||| ||||| ||||| |||||||| | Sbjct 8707809 ACGATGACCTGTGGAACTCTGCCCAGCTGCAGCTGGTGCGGGAGGGCAAGATGCACGGAT 8707750 Query 37891 ATATGCGCATGTATTGGTGCAAGAAAATTTTGGAATGGTCTGATGATGCTCAGACC--GC 37948 | |||||||||| ||| ||||||||| | || ||| | | | || | || | || Sbjct 8707749 TTCTGCGCATGTACTGGGCCAAGAAAATACTCGAGTGGACGGCC-ACGC-CGGAGCAGGC 8707692 Query 37949 GCTCAACTACGCCATTTATCTCAATGATAAGTACAGCTTGGACGGGCGTGATCCCAACGG 38008 ||| | ||||| || || || || ||||||||| | |||||||| |||||||| || Sbjct 8707691 GCTGGAGTACGCGATCCTGCTGAACGACAAGTACAGCCTAGACGGGCGCGATCCCAATGG 8707632 Query 38009 TTACGTCGGCTGTTTGTGGTCTATATGCGGGC-TACACGATAGAGCCTGGCGCGAGATTC 38067 || || ||||| |||||||||| || |||| ||||||||| | |||| ||| | Sbjct 8707631 CTATGTGGGCTGCATGTGGTCTAT-TGGGGGCATACACGATATGGGCTGGAAGGAGCGTG 8707573 Query 38068 CCATTTACGGCAAGATTCGGTACATGAACTACAACGGATG 38107 | || | ||| |||||||| ||||||||||| | ||||| Sbjct 8707572 CGATATTCGGAAAGATTCGCTACATGAACTATCAAGGATG 8707533 >seq4089 Length=19780 Score = 105 bits (116), Expect = 5e-18 Identities = 80/92 (87%), Gaps = 2/92 (2%) Strand=Plus/Minus Query 115530 TCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAAC 115587 ||||||||| |||||||||||||||| |||||||||||||||| | |||||||||||| Sbjct 1054 TCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAAC 995 Query 115588 CAAAACTGATATATTGAGCCATTCGTGGTATC 115619 || |||||||||| |||||| || | ||| || Sbjct 994 CATAACTGATATAATGAGCCTTTTGCGGTTTC 963 Score = 105 bits (116), Expect = 5e-18 Identities = 80/92 (87%), Gaps = 2/92 (2%) Strand=Plus/Minus Query 114333 TCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAAC 114390 ||||||||| |||||||||||||||| |||||||||||||||| | |||||||||||| Sbjct 1054 TCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAAC 995 Query 114391 CAAAACTGATATATTGAGCCATTCGTGGTATC 114422 || |||||||||| |||||| || | ||| || Sbjct 994 CATAACTGATATAATGAGCCTTTTGCGGTTTC 963 >seq1058 Length=23677 Score = 104 bits (114), Expect = 2e-17 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 1665 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 1724 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422 | |||||||||| |||||| || | ||| || Sbjct 1725 ATAACTGATATAATGAGCCTTTTGCGGTTTC 1755 Score = 104 bits (114), Expect = 2e-17 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 1665 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 1724 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619 | |||||||||| |||||| || | ||| || Sbjct 1725 ATAACTGATATAATGAGCCTTTTGCGGTTTC 1755 >seq2337 Length=833 Score = 95.1 bits (104), Expect = 1e-14 Identities = 77/91 (85%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 ||| |||| | |||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 583 CATTTATTAGATCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 642 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422 | |||||||||| |||||| || | ||| || Sbjct 643 ATAACTGATATAATGAGCCTTTTGCGGTTTC 673 Score = 95.1 bits (104), Expect = 1e-14 Identities = 77/91 (85%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 ||| |||| | |||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 583 CATTTATTAGATCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 642 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619 | |||||||||| |||||| || | ||| || Sbjct 643 ATAACTGATATAATGAGCCTTTTGCGGTTTC 673 >seq1918 Length=624 Score = 91.5 bits (100), Expect = 1e-13 Identities = 65/72 (90%), Gaps = 2/72 (3%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 225 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 166 Query 115589 AAAACTGATATA 115600 | |||||||||| Sbjct 165 ATAACTGATATA 154 Score = 91.5 bits (100), Expect = 1e-13 Identities = 65/72 (90%), Gaps = 2/72 (3%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 225 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 166 Query 114392 AAAACTGATATA 114403 | |||||||||| Sbjct 165 ATAACTGATATA 154 >seq3 Length=12541198 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || ||||||| ||| | ||| ||||||||| ||||||||||| | | Sbjct 3174111 CCACCGCGCAGGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGAC 3174052 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || |||| |||| ||||||||||| || |||| ||||||||||| || Sbjct 3174051 AAGGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 3173992 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 3173991 ATGCCCTCCTTGTCC 3173977 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || ||||||| ||| | ||| ||||||||| ||||||||||| | | Sbjct 3174567 CCACCGCGCAGGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGAC 3174508 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || |||| |||| ||||||||||| || |||| ||||||||||| || Sbjct 3174507 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 3174448 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 3174447 ATGCCCTCCTTGTCC 3174433 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || ||||||| ||| | ||| ||||||||| ||||||||||| | | Sbjct 3174795 CCACCGCGCAGGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGAC 3174736 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || |||| |||| ||||||||||| || |||| ||||||||||| || Sbjct 3174735 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 3174676 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 3174675 ATGCCCTCCTTGTCC 3174661 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || ||||||| ||| | ||| ||||||||| ||||||||||| | | Sbjct 3175479 CCACCGCGCAGGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGAC 3175420 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || |||| |||| ||||||||||| || |||| ||||||||||| || Sbjct 3175419 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 3175360 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 3175359 ATGCCCTCCTTGTCC 3175345 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || ||||||| ||| | ||| ||||||||| |||||||| || | | Sbjct 3174339 CCACCGCGCAGGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3174280 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || |||| |||| ||||||||||| || |||| ||||||||||| || Sbjct 3174279 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 3174220 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 3174219 ATGCCCTCCTTGTCC 3174205 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || ||||||| ||| | ||| ||||||||| |||||||| || | | Sbjct 3175023 CCACCGCGCAGGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3174964 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || |||| |||| ||||||||||| || |||| ||||||||||| || Sbjct 3174963 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 3174904 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 3174903 ATGCCCTCCTTGTCC 3174889 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | ||| || ||||||| || || || ||||||||| |||||||| || | | Sbjct 3175251 CCTCCGCGCAGGCGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 3175192 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || |||| |||| ||||||||||| || |||| ||||||||||| || Sbjct 3175191 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 3175132 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 3175131 ATGCCCTCCTTGTCC 3175117 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || ||||||| ||| | ||| ||||||||| |||||||| || | | Sbjct 3175707 CCACCGCGCAGGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3175648 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || |||| |||| ||||||||||| || |||| ||||||||||| || Sbjct 3175647 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 3175588 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 3175587 ATGCCCTCCTTGTCC 3175573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397039220241580