Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017
65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters
Query= NC_009503.1
Length=124121
Score E
Sequences producing significant alignments: (Bits) Value
seq10 145 6e-30
seq4089 105 5e-18
seq1058 104 2e-17
seq2337 95.1 1e-14
seq1918 91.5 1e-13
seq3 86.0 5e-12
>seq10
Length=19787792
Score = 145 bits (160), Expect = 6e-30
Identities = 204/280 (73%), Gaps = 6/280 (2%)
Strand=Plus/Minus
Query 37831 ACGATCTCTTGTGGAACGCGGCTCAAATTCAGCTTGTGCGCGAGGGTAAGATGCATCAGT 37890
||||| | |||||||| | || || | ||||| ||||| ||||| |||||||| |
Sbjct 8707809 ACGATGACCTGTGGAACTCTGCCCAGCTGCAGCTGGTGCGGGAGGGCAAGATGCACGGAT 8707750
Query 37891 ATATGCGCATGTATTGGTGCAAGAAAATTTTGGAATGGTCTGATGATGCTCAGACC--GC 37948
| |||||||||| ||| ||||||||| | || ||| | | | || | || | ||
Sbjct 8707749 TTCTGCGCATGTACTGGGCCAAGAAAATACTCGAGTGGACGGCC-ACGC-CGGAGCAGGC 8707692
Query 37949 GCTCAACTACGCCATTTATCTCAATGATAAGTACAGCTTGGACGGGCGTGATCCCAACGG 38008
||| | ||||| || || || || ||||||||| | |||||||| |||||||| ||
Sbjct 8707691 GCTGGAGTACGCGATCCTGCTGAACGACAAGTACAGCCTAGACGGGCGCGATCCCAATGG 8707632
Query 38009 TTACGTCGGCTGTTTGTGGTCTATATGCGGGC-TACACGATAGAGCCTGGCGCGAGATTC 38067
|| || ||||| |||||||||| || |||| ||||||||| | |||| ||| |
Sbjct 8707631 CTATGTGGGCTGCATGTGGTCTAT-TGGGGGCATACACGATATGGGCTGGAAGGAGCGTG 8707573
Query 38068 CCATTTACGGCAAGATTCGGTACATGAACTACAACGGATG 38107
| || | ||| |||||||| ||||||||||| | |||||
Sbjct 8707572 CGATATTCGGAAAGATTCGCTACATGAACTATCAAGGATG 8707533
>seq4089
Length=19780
Score = 105 bits (116), Expect = 5e-18
Identities = 80/92 (87%), Gaps = 2/92 (2%)
Strand=Plus/Minus
Query 115530 TCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAAC 115587
||||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||
Sbjct 1054 TCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAAC 995
Query 115588 CAAAACTGATATATTGAGCCATTCGTGGTATC 115619
|| |||||||||| |||||| || | ||| ||
Sbjct 994 CATAACTGATATAATGAGCCTTTTGCGGTTTC 963
Score = 105 bits (116), Expect = 5e-18
Identities = 80/92 (87%), Gaps = 2/92 (2%)
Strand=Plus/Minus
Query 114333 TCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAAC 114390
||||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||
Sbjct 1054 TCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAAC 995
Query 114391 CAAAACTGATATATTGAGCCATTCGTGGTATC 114422
|| |||||||||| |||||| || | ||| ||
Sbjct 994 CATAACTGATATAATGAGCCTTTTGCGGTTTC 963
>seq1058
Length=23677
Score = 104 bits (114), Expect = 2e-17
Identities = 79/91 (87%), Gaps = 2/91 (2%)
Strand=Plus/Plus
Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391
|||||||| |||||||||||||||| |||||||||||||||| | |||||||||||||
Sbjct 1665 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 1724
Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422
| |||||||||| |||||| || | ||| ||
Sbjct 1725 ATAACTGATATAATGAGCCTTTTGCGGTTTC 1755
Score = 104 bits (114), Expect = 2e-17
Identities = 79/91 (87%), Gaps = 2/91 (2%)
Strand=Plus/Plus
Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588
|||||||| |||||||||||||||| |||||||||||||||| | |||||||||||||
Sbjct 1665 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 1724
Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619
| |||||||||| |||||| || | ||| ||
Sbjct 1725 ATAACTGATATAATGAGCCTTTTGCGGTTTC 1755
>seq2337
Length=833
Score = 95.1 bits (104), Expect = 1e-14
Identities = 77/91 (85%), Gaps = 2/91 (2%)
Strand=Plus/Plus
Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391
||| |||| | |||||||||||||| |||||||||||||||| | |||||||||||||
Sbjct 583 CATTTATTAGATCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 642
Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422
| |||||||||| |||||| || | ||| ||
Sbjct 643 ATAACTGATATAATGAGCCTTTTGCGGTTTC 673
Score = 95.1 bits (104), Expect = 1e-14
Identities = 77/91 (85%), Gaps = 2/91 (2%)
Strand=Plus/Plus
Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588
||| |||| | |||||||||||||| |||||||||||||||| | |||||||||||||
Sbjct 583 CATTTATTAGATCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 642
Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619
| |||||||||| |||||| || | ||| ||
Sbjct 643 ATAACTGATATAATGAGCCTTTTGCGGTTTC 673
>seq1918
Length=624
Score = 91.5 bits (100), Expect = 1e-13
Identities = 65/72 (90%), Gaps = 2/72 (3%)
Strand=Plus/Minus
Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588
|||||||| |||||||||||||||| |||||||||||||||| | |||||||||||||
Sbjct 225 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 166
Query 115589 AAAACTGATATA 115600
| ||||||||||
Sbjct 165 ATAACTGATATA 154
Score = 91.5 bits (100), Expect = 1e-13
Identities = 65/72 (90%), Gaps = 2/72 (3%)
Strand=Plus/Minus
Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391
|||||||| |||||||||||||||| |||||||||||||||| | |||||||||||||
Sbjct 225 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 166
Query 114392 AAAACTGATATA 114403
| ||||||||||
Sbjct 165 ATAACTGATATA 154
>seq3
Length=12541198
Score = 86.0 bits (94), Expect = 5e-12
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
|| || | ||| || ||||||| ||| | ||| ||||||||| ||||||||||| | |
Sbjct 3174111 CCACCGCGCAGGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGAC 3174052
Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020
|| || |||| |||| ||||||||||| || |||| ||||||||||| ||
Sbjct 3174051 AAGGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 3173992
Query 34021 ACGCTCTCTTTGTCC 34035
| || ||| ||||||
Sbjct 3173991 ATGCCCTCCTTGTCC 3173977
Score = 86.0 bits (94), Expect = 5e-12
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
|| || | ||| || ||||||| ||| | ||| ||||||||| ||||||||||| | |
Sbjct 3174567 CCACCGCGCAGGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGAC 3174508
Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020
|| || |||| |||| ||||||||||| || |||| ||||||||||| ||
Sbjct 3174507 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 3174448
Query 34021 ACGCTCTCTTTGTCC 34035
| || ||| ||||||
Sbjct 3174447 ATGCCCTCCTTGTCC 3174433
Score = 86.0 bits (94), Expect = 5e-12
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
|| || | ||| || ||||||| ||| | ||| ||||||||| ||||||||||| | |
Sbjct 3174795 CCACCGCGCAGGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGAC 3174736
Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020
|| || |||| |||| ||||||||||| || |||| ||||||||||| ||
Sbjct 3174735 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 3174676
Query 34021 ACGCTCTCTTTGTCC 34035
| || ||| ||||||
Sbjct 3174675 ATGCCCTCCTTGTCC 3174661
Score = 86.0 bits (94), Expect = 5e-12
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
|| || | ||| || ||||||| ||| | ||| ||||||||| ||||||||||| | |
Sbjct 3175479 CCACCGCGCAGGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGAC 3175420
Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020
|| || |||| |||| ||||||||||| || |||| ||||||||||| ||
Sbjct 3175419 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 3175360
Query 34021 ACGCTCTCTTTGTCC 34035
| || ||| ||||||
Sbjct 3175359 ATGCCCTCCTTGTCC 3175345
Score = 82.4 bits (90), Expect = 6e-11
Identities = 99/135 (73%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
|| || | ||| || ||||||| ||| | ||| ||||||||| |||||||| || | |
Sbjct 3174339 CCACCGCGCAGGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3174280
Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020
|| || |||| |||| ||||||||||| || |||| ||||||||||| ||
Sbjct 3174279 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 3174220
Query 34021 ACGCTCTCTTTGTCC 34035
| || ||| ||||||
Sbjct 3174219 ATGCCCTCCTTGTCC 3174205
Score = 82.4 bits (90), Expect = 6e-11
Identities = 99/135 (73%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
|| || | ||| || ||||||| ||| | ||| ||||||||| |||||||| || | |
Sbjct 3175023 CCACCGCGCAGGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3174964
Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020
|| || |||| |||| ||||||||||| || |||| ||||||||||| ||
Sbjct 3174963 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 3174904
Query 34021 ACGCTCTCTTTGTCC 34035
| || ||| ||||||
Sbjct 3174903 ATGCCCTCCTTGTCC 3174889
Score = 82.4 bits (90), Expect = 6e-11
Identities = 99/135 (73%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
||||| | ||| || ||||||| || || || ||||||||| |||||||| || | |
Sbjct 3175251 CCTCCGCGCAGGCGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 3175192
Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020
|| || |||| |||| ||||||||||| || |||| ||||||||||| ||
Sbjct 3175191 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 3175132
Query 34021 ACGCTCTCTTTGTCC 34035
| || ||| ||||||
Sbjct 3175131 ATGCCCTCCTTGTCC 3175117
Score = 82.4 bits (90), Expect = 6e-11
Identities = 99/135 (73%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
|| || | ||| || ||||||| ||| | ||| ||||||||| |||||||| || | |
Sbjct 3175707 CCACCGCGCAGGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3175648
Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020
|| || |||| |||| ||||||||||| || |||| ||||||||||| ||
Sbjct 3175647 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 3175588
Query 34021 ACGCTCTCTTTGTCC 34035
| || ||| ||||||
Sbjct 3175587 ATGCCCTCCTTGTCC 3175573
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397039220241580
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