Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq10 152 6e-32 seq15 116 4e-21 >seq10 Length=19787792 Score = 152 bits (168), Expect = 6e-32 Identities = 322/478 (67%), Gaps = 2/478 (0%) Strand=Plus/Plus Query 125773 CTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATAAAATCAAATGGGTT 125832 |||||| |||||||||||||| ||||||| ||| ||||||| |||| || || || Sbjct 12207763 CTTCTCAAAGAAGTTTGTCTTTCCGTCCAGCGAGATCATCTCCATGAAATTGAAAGGATT 12207822 Query 125833 CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGACGATCCGAGACGTACTC 125892 ||| | ||| | || | ||| || | || || || ||||| | ||| |||| Sbjct 12207823 CTTAGTGTTGTAGATCTTACCCACACCGAGCTCCCCTAGCAGCCGATCGGCCACGAACTC 12207882 Query 125893 AATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACATGGGAGCGCGTCCAA 125952 ||||||| ||||| || ||||||| || || | || || || || || Sbjct 12207883 GATGTACTGGGACATGAGAACACAGTTCATGCCAATCAAATTGACGGGCAGGGCTTCAGT 12207942 Query 125953 GATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGTGAATGGTGTCCACCCC 126012 || |||| ||| ||| |||||||| || |||| | ||| || ||| ||| | | Sbjct 12207943 GAGGAACTCCTGCTCGATTTCCACAGCATCCCTGATGATCTCGATGATGCGCTCC-CGCT 12208001 Query 126013 AGGTCTATTGCGCAAAGTCTTGA-AGAGTTCCACGGCAAACTCTTGGTGGAGACCCTCGT 126071 || | ||| | | | ||| | | ||| ||||| || ||| ||||| |||| Sbjct 12208002 TGGGCCGCTGCACTAGATGGTGATACATGAGCACCGCAAAGTCGCAGTGAAGACCTTCGT 12208061 Query 126072 CACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCTTCAACC 126131 |||||||||| || || || |||||| ||| || ||||||||||| |||||||||| || Sbjct 12208062 CACGGGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTTCTTCAGCC 12208121 Query 126132 AGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACGCAAAGA 126191 | || |||| ||| || ||||||||||| ||||| ||| || |||| | Sbjct 12208122 AAAAGATCGAGGCAAAGCTGCCACTAAAGAAGATTCCTTCCACGGCCGCAAAGGCAATAA 12208181 Query 126192 GACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGCCCACTGCGCCTT 126249 |||||| |||||| | ||| || | | | ||| ||| ||||| | |||||| Sbjct 12208182 TACGCTCGGCAAAGTTGGCCGATTTCGAGGATATCCAGGACATGGCCCAGTCCGCCTT 12208239 >seq15 Length=6594820 Score = 116 bits (128), Expect = 4e-21 Identities = 185/263 (70%), Gaps = 2/263 (1%) Strand=Plus/Minus Query 171908 TCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACACGGTTCAAGGAGATTGATATTG 171967 || ||||| ||| | || || || || || ||||| | ||| || || | || || ||| Sbjct 6045835 TCCTTGCCGCCCGTCAGCCGAGTACCGAACTGACCGCGCGGCTCCAGCAAGTTTATGTTG 6045776 Query 171968 TTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTTCACC 172026 || ||||| | ||||| | ||||| || || || || ||| | ||||||||| || || Sbjct 6045775 TTCGAACCAACGTAGTTCTGGGCCAGATTCACGATAGTCATCTG-GAGGGAGACCTCGCC 6045717 Query 172027 GTGATGGTAGGCCGACTTGTCCGCGACATACGCCGCCAACTGTGCCACCTTCATCTCATC 172086 ||| |||||||||||| | ||||| || | | | || ||| |||||||| | ||| Sbjct 6045716 GTGGTGGTAGGCCGACATCTCCGCCACGGAGCCAGACAGCTGGGCCACCTTTACCTCGCG 6045657 Query 172087 CTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCCGTC 172146 |||| ||| | |||||| | |||||||||| | ||| ||||| ||||| || Sbjct 6045656 CTTGTCGTTGCGCTTGAAGCAAGTGAACATGACCTTGCGCTGGCCCGGCTTCAGGCCATC 6045597 Query 172147 GGCCATGTGCGCGATGGAACGCT 172169 ||| | | |||||| |||| Sbjct 6045596 CACCAGGCTGGGGATGGAGCGCT 6045574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597317833453200