Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017
65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq10 152 6e-32
seq15 116 4e-21
>seq10
Length=19787792
Score = 152 bits (168), Expect = 6e-32
Identities = 322/478 (67%), Gaps = 2/478 (0%)
Strand=Plus/Plus
Query 125773 CTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATAAAATCAAATGGGTT 125832
|||||| |||||||||||||| ||||||| ||| ||||||| |||| || || ||
Sbjct 12207763 CTTCTCAAAGAAGTTTGTCTTTCCGTCCAGCGAGATCATCTCCATGAAATTGAAAGGATT 12207822
Query 125833 CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGACGATCCGAGACGTACTC 125892
||| | ||| | || | ||| || | || || || ||||| | ||| ||||
Sbjct 12207823 CTTAGTGTTGTAGATCTTACCCACACCGAGCTCCCCTAGCAGCCGATCGGCCACGAACTC 12207882
Query 125893 AATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACATGGGAGCGCGTCCAA 125952
||||||| ||||| || ||||||| || || | || || || || ||
Sbjct 12207883 GATGTACTGGGACATGAGAACACAGTTCATGCCAATCAAATTGACGGGCAGGGCTTCAGT 12207942
Query 125953 GATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGTGAATGGTGTCCACCCC 126012
|| |||| ||| ||| |||||||| || |||| | ||| || ||| ||| | |
Sbjct 12207943 GAGGAACTCCTGCTCGATTTCCACAGCATCCCTGATGATCTCGATGATGCGCTCC-CGCT 12208001
Query 126013 AGGTCTATTGCGCAAAGTCTTGA-AGAGTTCCACGGCAAACTCTTGGTGGAGACCCTCGT 126071
|| | ||| | | | ||| | | ||| ||||| || ||| ||||| ||||
Sbjct 12208002 TGGGCCGCTGCACTAGATGGTGATACATGAGCACCGCAAAGTCGCAGTGAAGACCTTCGT 12208061
Query 126072 CACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCTTCAACC 126131
|||||||||| || || || |||||| ||| || ||||||||||| |||||||||| ||
Sbjct 12208062 CACGGGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTTCTTCAGCC 12208121
Query 126132 AGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACGCAAAGA 126191
| || |||| ||| || ||||||||||| ||||| ||| || |||| |
Sbjct 12208122 AAAAGATCGAGGCAAAGCTGCCACTAAAGAAGATTCCTTCCACGGCCGCAAAGGCAATAA 12208181
Query 126192 GACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGCCCACTGCGCCTT 126249
|||||| |||||| | ||| || | | | ||| ||| ||||| | ||||||
Sbjct 12208182 TACGCTCGGCAAAGTTGGCCGATTTCGAGGATATCCAGGACATGGCCCAGTCCGCCTT 12208239
>seq15
Length=6594820
Score = 116 bits (128), Expect = 4e-21
Identities = 185/263 (70%), Gaps = 2/263 (1%)
Strand=Plus/Minus
Query 171908 TCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACACGGTTCAAGGAGATTGATATTG 171967
|| ||||| ||| | || || || || || ||||| | ||| || || | || || |||
Sbjct 6045835 TCCTTGCCGCCCGTCAGCCGAGTACCGAACTGACCGCGCGGCTCCAGCAAGTTTATGTTG 6045776
Query 171968 TTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTTCACC 172026
|| ||||| | ||||| | ||||| || || || || ||| | ||||||||| || ||
Sbjct 6045775 TTCGAACCAACGTAGTTCTGGGCCAGATTCACGATAGTCATCTG-GAGGGAGACCTCGCC 6045717
Query 172027 GTGATGGTAGGCCGACTTGTCCGCGACATACGCCGCCAACTGTGCCACCTTCATCTCATC 172086
||| |||||||||||| | ||||| || | | | || ||| |||||||| | |||
Sbjct 6045716 GTGGTGGTAGGCCGACATCTCCGCCACGGAGCCAGACAGCTGGGCCACCTTTACCTCGCG 6045657
Query 172087 CTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCCGTC 172146
|||| ||| | |||||| | |||||||||| | ||| ||||| ||||| ||
Sbjct 6045656 CTTGTCGTTGCGCTTGAAGCAAGTGAACATGACCTTGCGCTGGCCCGGCTTCAGGCCATC 6045597
Query 172147 GGCCATGTGCGCGATGGAACGCT 172169
||| | | |||||| ||||
Sbjct 6045596 CACCAGGCTGGGGATGGAGCGCT 6045574
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 597317833453200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |