Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq12 114 1e-20 seq6 114 1e-20 seq3 104 2e-17 seq4631 93.3 4e-14 >seq12 Length=1235759 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||||| | ||||| | || | ||||| || || || |||||||| || | Sbjct 219395 ACCACCGCGCAGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 219336 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | || || |||||||||||||| | || || |||||||| || || || Sbjct 219335 CAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 219276 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| || || || || || || || ||| ||| ||| | || ||| || || || Sbjct 219275 AATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGAC 219216 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | ||||||||| || | |||||| ||||| ||||||||||| Sbjct 219215 CTCCAAGGTGATGGTCTTGCCAGTGAGAGTTTTCACGAAGATTTGCATTTT 219165 >seq6 Length=9197557 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | | |||||| | ||| | ||||| || || || |||||||| || | Sbjct 542766 ACCACCGCGGAGACGAAGCACCAAATGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGA 542825 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | || || |||||||||||||| | ||||| ||||||||||| || || Sbjct 542826 AAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGG 542885 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||| || || || || || || ||| || ||| | || || | ||||| Sbjct 542886 GATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCAC 542945 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||| || |||||||| ||||| || ||||||||||| Sbjct 542946 CTCCAGGGTGATGGTTTTTCCGGTCAAGGTTTTCACAAAAATTTGCAT 542993 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | | |||||| | ||| | ||||| || || || |||||||| || | Sbjct 543222 ACCACCGCGGAGACGAAGCACCAAATGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGA 543281 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | || || |||||||||||||| | ||||| ||||||||||| || || Sbjct 543282 AAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGG 543341 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||| || || || || || || ||| || ||| | || || | ||||| Sbjct 543342 GATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCAC 543401 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||| || |||||||| ||||| || ||||||||||| Sbjct 543402 CTCCAGGGTGATGGTTTTTCCGGTCAAGGTTTTCACAAAAATTTGCAT 543449 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | | ||||| | ||| | ||||| || || || |||||||| || | Sbjct 543906 ACCACCGCGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCAGA 543965 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | || || |||||||||||||| | ||||| ||||||||||| ||||| Sbjct 543966 AAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGAGG 544025 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||| || || || || || || |||||| ||| | || || | ||||| Sbjct 544026 GATTCCCTCCTTGTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCGGATGGCTCCAC 544085 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||| || |||||||| ||||| || || |||||||| Sbjct 544086 CTCCAGGGTGATGGTTTTTCCGGTCAAGGTTTTCACAAAGATTTGCAT 544133 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | | ||||| | ||| | ||||| || || || |||||||| || | Sbjct 542538 ACCACCGCGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGA 542597 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | || || |||||||||||||| | ||||| ||||||||||| || || Sbjct 542598 AAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGG 542657 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||| || || || || || || ||| || ||| | || || | ||||| Sbjct 542658 GATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCAC 542717 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||| || |||||||| ||||| || || |||||||| Sbjct 542718 CTCCAGGGTGATGGTTTTTCCGGTCAAGGTTTTCACAAAGATTTGCAT 542765 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | | |||||| | ||| | ||||| || || || |||||||| || | Sbjct 542994 ACCACCGCGGAGACGAAGCACCAAATGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGA 543053 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | || || |||||||| ||||| | ||||| ||||||||||| || || Sbjct 543054 AAGAGTGCGGCCATCCTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGGGG 543113 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||| || || || || || || ||| || ||| | || || | ||||| Sbjct 543114 GATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCAC 543173 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||| || |||||||| ||||| || || |||||||| Sbjct 543174 CTCCAGGGTGATGGTTTTTCCGGTCAAGGTTTTCACAAAGATTTGCAT 543221 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | | ||||| | ||| | ||||| || || || |||||||| || | Sbjct 543678 ACCACCGCGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGA 543737 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | || || |||||||||||||| | ||||| ||||||||||| || || Sbjct 543738 AAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGG 543797 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||| || || || || || || ||| || ||| | || || | ||||| Sbjct 543798 GATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCAC 543857 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||| || |||||||| ||||| || || |||||||| Sbjct 543858 CTCCAGGGTGATGGTTTTTCCGGTCAAGGTTTTCACAAAGATTTGCAT 543905 Score = 98.7 bits (108), Expect = 1e-15 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | ||| | ||||| || || || |||||||| || | | ||||| | ||| Sbjct 542326 AGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCT 542385 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || | ||||| ||||||||||| || || ||||| || || || Sbjct 542386 TCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCC 542445 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | | || ||||| || ||| | || ||| | || || || | || | || Sbjct 542446 TG-AATCTTGGCTTTCACGTTCTCAATGGTGTCAGAAGGTTCGACCTCCAGGGTAATAGT 542504 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || |||| ||| || |||||||||||||| Sbjct 542505 TTTTCCAGTCAGAGTCTTCACGAAAATTTGCAT 542537 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | | ||||| | ||| | ||||| || || || |||||||| || | Sbjct 543450 ACCACCGCGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGA 543509 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | || || |||||||||||||| | ||||| ||||||||||| || || Sbjct 543510 AAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGG 543569 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||| || || || || || || ||| || ||| | || || | ||||| Sbjct 543570 GATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCAC 543629 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||| || || |||| ||| || ||||| || ||||| Sbjct 543630 CTCCAGGGTGATGGTTTTTCCAGTCAGAGTCTTCACGAAGATCTGCAT 543677 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | | ||||| | ||| | ||||| || || || |||||||| || | Sbjct 544134 ACCACCGCGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGA 544193 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | || || || ||||||||||| | ||||| ||||||||||| || || Sbjct 544194 AAGAGTGCGGCCATCCTCCAGTTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGG 544253 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||| || || || || || || ||| || ||| | || || | ||||| Sbjct 544254 GATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCAC 544313 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | ||| || || ||||| ||||| || || || |||||||| Sbjct 544314 CTCCAGGGTGATGGTTTTTCCAGTCAAGGTTTTCACAAAGATCTGCATTTT 544364 >seq3 Length=12541198 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | ||||| | ||| | || || || || || ||||||||||| | Sbjct 3174111 CCACCGCGCAGGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGAC 3174052 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||| || |||| || |||||||||||||| | || | |||||||| || || ||| Sbjct 3174051 AAGGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 3173992 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| ||| ||| | || || || || || Sbjct 3173991 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCCGAGGGCTCAACC 3173932 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | ||||||||| |||| || || ||||| || |||||||| Sbjct 3173931 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATTTT 3173882 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | ||||| | ||| | || || || || || ||||||||||| | Sbjct 3175479 CCACCGCGCAGGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGAC 3175420 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || |||| || |||||||||||||| | || | |||||||| || || ||| Sbjct 3175419 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 3175360 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| ||| ||| | || || || || || Sbjct 3175359 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACC 3175300 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||||||| |||| ||| || ||||| || ||||| Sbjct 3175299 TCGAGGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 3175253 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | ||||| | ||| | || || || || || ||||||||||| | Sbjct 3174567 CCACCGCGCAGGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGAC 3174508 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || |||| || |||||||||||||| | || | |||||||| || || ||| Sbjct 3174507 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 3174448 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| ||| ||| | || || || || || Sbjct 3174447 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACC 3174388 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||||||| |||| ||| || || || || ||||| Sbjct 3174387 TCGAGGGTGATGGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 3174341 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | ||||| | ||| | || || || || || ||||||||||| | Sbjct 3174795 CCACCGCGCAGGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGAC 3174736 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || |||| || |||||||||||||| | || | |||||||| || || ||| Sbjct 3174735 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 3174676 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| ||| ||| | || || || || || Sbjct 3174675 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACC 3174616 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||||||| |||| ||| || || || || ||||| Sbjct 3174615 TCGAGGGTGATGGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 3174569 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | ||||| | ||| | || || || || || |||||||| || | Sbjct 3175023 CCACCGCGCAGGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3174964 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || |||| || |||||||||||||| | || | |||||||| || || ||| Sbjct 3174963 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 3174904 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| ||| ||| | || || || || || Sbjct 3174903 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACC 3174844 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||||||| |||| ||| || || || || ||||| Sbjct 3174843 TCGAGGGTGATGGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 3174797 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | ||||| | || | ||||| || || || |||||||| || | Sbjct 3175251 CCTCCGCGCAGGCGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 3175192 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || |||| || |||||||||||||| | || | |||||||| || || ||| Sbjct 3175191 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 3175132 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| ||| ||| | || || || || || Sbjct 3175131 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACC 3175072 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||||||| |||| ||| || || || || ||||| Sbjct 3175071 TCGAGGGTGATGGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 3175025 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | ||||| | ||| | || || || || || |||||||| || | Sbjct 3175707 CCACCGCGCAGGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3175648 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || |||| || |||||||||||||| | || | |||||||| || || ||| Sbjct 3175647 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 3175588 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| ||| ||| | || || || || || Sbjct 3175587 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACC 3175528 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||||||| |||| ||| || || || || ||||| Sbjct 3175527 TCGAGGGTGATGGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 3175481 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | ||||| | ||| | || || || || || |||||||| || | Sbjct 3174339 CCACCGCGCAGGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3174280 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || |||| || |||||||||||||| | || | |||||||| || || ||| Sbjct 3174279 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 3174220 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| ||| ||| | || || || || || Sbjct 3174219 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACC 3174160 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||||| |||| ||| || || || || ||||| Sbjct 3174159 TCGAGGGTGATAGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 3174113 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || ||||||||||| | | || || |||| || |||||||||||| Sbjct 3175905 GTGGACTCCTTCTGGATGTTGTAATCGGACAAAGTACGTCCGTCCTCCAGCTGCTTGCCG 3175846 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || | |||||||| || || ||||| || || || || || || || ||| Sbjct 3175845 GCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTG 3175786 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || || || || || || | || | ||||||||| |||| ||| Sbjct 3175785 ACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGAGTC 3175726 Query 64427 TTTACGAAAATTTGCAT 64443 || || || || ||||| Sbjct 3175725 TTGACAAAGATCTGCAT 3175709 >seq4631 Length=7852 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/216 (71%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| |||| ||| | || || || || |||||||| ||||| | | || || | || Sbjct 701 AAGTACTAAATGCAAGGTAGACTCCTTCTGAATGTTATAATCAGACAGTGTTCGGCCATC 642 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| | |||||||| || | || | ||||| || || ||||||||||||||||| || Sbjct 641 TTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGATCTGGAGGAATTCCTTCTTTGTC 582 Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCG--TCCACTTCTACAGTTAC 64407 || | | || ||||| ||| || | |||| ||| || || || || | ||||| Sbjct 581 CTGGA-TCTTGGCTTTGACATTTTCGATGGTAT--CCGACGGTTCGACCTCAAGAGTTAT 525 Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||||||| || | || ||||| || || ||||| Sbjct 524 GGTCTTGCCCGTTAGGGTCTTTACAAAGATCTGCAT 489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499614883767600