Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq9 114 1e-20 >seq9 Length=30819483 Score = 114 bits (126), Expect = 1e-20 Identities = 162/226 (72%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 108466 TGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAAC 108525 |||||| || ||| | || |||||||| ||||| || ||| || || || |||||| Sbjct 1495773 TGGGTGAGGGACCACCGCGTGCACCACAAATACTCGGAGACGGACGCGGATCCGCACAAC 1495832 Query 108526 GCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGAC 108585 || ||| | || |||| |||||||||||||| ||||| |||||| ||| |||| ||| Sbjct 1495833 GCAAACCGCGGATTCTTCTTCTCGCACGTGGGCTGGCTGATGATGCTGAAGCACCCGGAC 1495892 Query 108586 GTGAT--CTCGGCCGGTCGAAAAATGGACATGACGGACATATACTCCGATCCGGTGGTAG 108643 ||| | |||| || || | || ||||||| ||| | | ||||||| ||||| Sbjct 1495893 GTGCTGCGTCGG--GGCCGCCAGATCGACATGAGTGACGTGCTCGCCGATCCCGTGGTGC 1495950 Query 108644 TGTGGCACACCAAGTACTTTATTCCTCTTAAAATTTTGCTCTGTTT 108689 | ||| |||||||| || || ||||| || || ||||| || Sbjct 1495951 GCTTCCACCAGAAGTACTTCATCCCCCTTAAGATCTTTCTCTGCTT 1495996 Score = 102 bits (112), Expect = 6e-17 Identities = 76/89 (85%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 108862 AACAAATTGGTGGCGGCGTTGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTC 108921 ||||| |||||| || || | | ||||||||||||||||||||||||||||||| ||| Sbjct 9999000 AACAAGTTGGTGTCGACGCTCACCATCGGCGAGGGATGGCACAACTACCACCACGTCTTC 9998941 Query 108922 CCCTACGACTACAAGGCCGCCGAGTTGGG 108950 |||| ||||||||||| |||||| |||| Sbjct 9998940 CCCTGGGACTACAAGGCAGCCGAGCTGGG 9998912 Score = 95.1 bits (104), Expect = 9e-15 Identities = 162/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 108355 ACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGCCACCGCCCCGTTCAGG 108414 |||||||||||||| || ||||| | ||||| ||||||||||||| ||| | | Sbjct 9999576 ACGGCCGGCGTCCACCGTCTGTGGTCGCACAAGGCCTACAAGGCCAAGCTGCCGCTGCGC 9999517 Query 108415 GTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACACCATCCCGCAGTGGGTGCTC 108474 | ||||| ||| ||| || |||| ||||||| |||| | ||||| | Sbjct 9999516 ATCTTCCTCATGCTGTGCCAGTCCCTGGCCTTCCAGAACAGCATCTGGGAGTGGACCCGT 9999457 Query 108475 GATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAACGCCAACAGG 108534 || ||| | || |||||||||| | | ||||| ||||| || |||||| || | Sbjct 9999456 GACCACCGTGTGCACCACAAGTTCACCGACACACACGCCGATCCCCACAACTCCCGACGC 9999397 Query 108535 GGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGACGTGA 108589 || |||| ||| | ||| |||| ||||| ||| | ||| |||| ||||||| Sbjct 9999396 GGCTTCTTCTTCGCCCACATGGGCTGGCTGATGTGCAAGAAGCACCCGGACGTGA 9999342 Score = 82.4 bits (90), Expect = 6e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 118178 TCCGTCGCGACCGGCCCTTCCTATCTCTTGATAATAACCGTCCAGTGATTTGGGCATACT 118237 |||||| || || |||| ||| |||||| || || || || | ||||| |||| Sbjct 25811057 TCCGTCTCGCCCCGCCCGTCCGGCCTCTTGGTAGTAGCCTTCAATGGATTTTGGCAGCGA 25810998 Query 118238 GTGATGTATCACCAACCGCACGTCGGGTTTATCGATGCCCATCCCGAACGCTATCGTCGA 118297 || ||| | || || || || ||||| || ||||||||||| || || || || || | Sbjct 25810997 GTAATGCAGGACAAATCGAACATCGGGCTTGTCGATGCCCATGCCAAATGCAATAGTGGC 25810938 Query 118298 ACATATCACTCGGGTCTCGTTCGCCATCCA 118327 ||| ||||||||| ||| ||| | || ||| Sbjct 25810937 ACAAATCACTCGGATCTTGTTGGTCAACCA 25810908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381750512819760