Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017
65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters
Query= NC_011335.1
Length=119343
Score E
Sequences producing significant alignments: (Bits) Value
seq9 114 1e-20
>seq9
Length=30819483
Score = 114 bits (126), Expect = 1e-20
Identities = 162/226 (72%), Gaps = 4/226 (2%)
Strand=Plus/Plus
Query 108466 TGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAAC 108525
|||||| || ||| | || |||||||| ||||| || ||| || || || ||||||
Sbjct 1495773 TGGGTGAGGGACCACCGCGTGCACCACAAATACTCGGAGACGGACGCGGATCCGCACAAC 1495832
Query 108526 GCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGAC 108585
|| ||| | || |||| |||||||||||||| ||||| |||||| ||| |||| |||
Sbjct 1495833 GCAAACCGCGGATTCTTCTTCTCGCACGTGGGCTGGCTGATGATGCTGAAGCACCCGGAC 1495892
Query 108586 GTGAT--CTCGGCCGGTCGAAAAATGGACATGACGGACATATACTCCGATCCGGTGGTAG 108643
||| | |||| || || | || ||||||| ||| | | ||||||| |||||
Sbjct 1495893 GTGCTGCGTCGG--GGCCGCCAGATCGACATGAGTGACGTGCTCGCCGATCCCGTGGTGC 1495950
Query 108644 TGTGGCACACCAAGTACTTTATTCCTCTTAAAATTTTGCTCTGTTT 108689
| ||| |||||||| || || ||||| || || ||||| ||
Sbjct 1495951 GCTTCCACCAGAAGTACTTCATCCCCCTTAAGATCTTTCTCTGCTT 1495996
Score = 102 bits (112), Expect = 6e-17
Identities = 76/89 (85%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 108862 AACAAATTGGTGGCGGCGTTGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTC 108921
||||| |||||| || || | | ||||||||||||||||||||||||||||||| |||
Sbjct 9999000 AACAAGTTGGTGTCGACGCTCACCATCGGCGAGGGATGGCACAACTACCACCACGTCTTC 9998941
Query 108922 CCCTACGACTACAAGGCCGCCGAGTTGGG 108950
|||| ||||||||||| |||||| ||||
Sbjct 9998940 CCCTGGGACTACAAGGCAGCCGAGCTGGG 9998912
Score = 95.1 bits (104), Expect = 9e-15
Identities = 162/235 (69%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 108355 ACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGCCACCGCCCCGTTCAGG 108414
|||||||||||||| || ||||| | ||||| ||||||||||||| ||| | |
Sbjct 9999576 ACGGCCGGCGTCCACCGTCTGTGGTCGCACAAGGCCTACAAGGCCAAGCTGCCGCTGCGC 9999517
Query 108415 GTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACACCATCCCGCAGTGGGTGCTC 108474
| ||||| ||| ||| || |||| ||||||| |||| | ||||| |
Sbjct 9999516 ATCTTCCTCATGCTGTGCCAGTCCCTGGCCTTCCAGAACAGCATCTGGGAGTGGACCCGT 9999457
Query 108475 GATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAACGCCAACAGG 108534
|| ||| | || |||||||||| | | ||||| ||||| || |||||| || |
Sbjct 9999456 GACCACCGTGTGCACCACAAGTTCACCGACACACACGCCGATCCCCACAACTCCCGACGC 9999397
Query 108535 GGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGACGTGA 108589
|| |||| ||| | ||| |||| ||||| ||| | ||| |||| |||||||
Sbjct 9999396 GGCTTCTTCTTCGCCCACATGGGCTGGCTGATGTGCAAGAAGCACCCGGACGTGA 9999342
Score = 82.4 bits (90), Expect = 6e-11
Identities = 108/150 (72%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 118178 TCCGTCGCGACCGGCCCTTCCTATCTCTTGATAATAACCGTCCAGTGATTTGGGCATACT 118237
|||||| || || |||| ||| |||||| || || || || | ||||| ||||
Sbjct 25811057 TCCGTCTCGCCCCGCCCGTCCGGCCTCTTGGTAGTAGCCTTCAATGGATTTTGGCAGCGA 25810998
Query 118238 GTGATGTATCACCAACCGCACGTCGGGTTTATCGATGCCCATCCCGAACGCTATCGTCGA 118297
|| ||| | || || || || ||||| || ||||||||||| || || || || || |
Sbjct 25810997 GTAATGCAGGACAAATCGAACATCGGGCTTGTCGATGCCCATGCCAAATGCAATAGTGGC 25810938
Query 118298 ACATATCACTCGGGTCTCGTTCGCCATCCA 118327
||| ||||||||| ||| ||| | || |||
Sbjct 25810937 ACAAATCACTCGGATCTTGTTGGTCAACCA 25810908
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 381750512819760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |