Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017
65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq4631 116 3e-21
seq6 100 2e-16
>seq4631
Length=7852
Score = 116 bits (128), Expect = 3e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027
|||||||| | |||||| || || || ||||| ||||| || ||| | |||||
Sbjct 697 ACTAAATGCAAGGTAGACTCCTTCTGAATGTTATAATCAGACAGTGTTCGGCCATCTTCC 638
Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087
||||| ||||||||| | |||||||||||||| || ||||||||||| |||||
Sbjct 637 AATTGCTTGCCAGCGAAGATCAAACGCTGTTGATCTGGAGGAATTCCTTCTTTGTCCTGG 578
Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147
|| ||| ||| ||| |||| || ||||| ||| || || | || ||||| ||
Sbjct 577 ATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTTATGGTCTTG 518
Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| || || || |||||||| || |||||
Sbjct 517 CCCGTTAGGGTCTTTACAAAGATCTGCAT 489
>seq6
Length=9197557
Score = 100 bits (110), Expect = 2e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027
|| ||||| || || || || || || |||||||| || ||| | | | |||||
Sbjct 542329 ACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCTTCC 542388
Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087
| || ||||||||| | || | |||||| ||||| || ||||| |||||||| |
Sbjct 542389 AGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGA 542448
Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147
|| ||| ||| || | || || || || | ||| || || | |||||| |||||
Sbjct 542449 ATCTTGGCTTTCACGTTCTCAATGGTGTCAGAAGGTTCGACCTCCAGGGTAATAGTTTTT 542508
Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
|| |||||||| || || ||||||||||||
Sbjct 542509 CCAGTCAGAGTCTTCACGAAAATTTGCATA 542538
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357371136125150
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |