Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq6 86.0 6e-12 >seq6 Length=9197557 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172 ||| || ||||| | || ||| | ||| || || || ||||| ||||| || || || Sbjct 542310 TCCGCCACGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGA 542369 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 | || ||| |||| || || || ||| | || | || |||||||| || || Sbjct 542370 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGG 542429 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGA 45291 || || || || || ||||| || ||| | || | || | |||||| |||| |||| Sbjct 542430 GATTCCCTCCTTGTCCTGAATCTTGGCTTTCA-CGTTCTCAATGGTGTCAGAAGGTTCGA 542488 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || |||| ||||| || || ||||| || || ||||||||||| Sbjct 542489 CCTCCAGGGTAATAGTTTTTCCAGTCAGAGTCTTCACGAAAATTTGCAT 542537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451976136308400