Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq10 149 8e-31 seq15 107 2e-18 >seq10 Length=19787792 Score = 149 bits (164), Expect = 8e-31 Identities = 295/434 (68%), Gaps = 2/434 (0%) Strand=Plus/Plus Query 127246 CTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCATAAAATCAAATGGGTT 127305 |||||| |||||||||||||| || || || ||| ||||||| |||| || || || Sbjct 12207763 CTTCTCAAAGAAGTTTGTCTTTCCGTCCAGCGAGATCATCTCCATGAAATTGAAAGGATT 12207822 Query 127306 CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGACGATCCGAGACGTACTC 127365 ||| | ||| | || | ||| || | || || || ||||| | ||| |||| Sbjct 12207823 CTTAGTGTTGTAGATCTTACCCACACCGAGCTCCCCTAGCAGCCGATCGGCCACGAACTC 12207882 Query 127366 AATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACATGGGAGCGCGTCCAA 127425 ||||||| ||||| || ||||||| || || | || || || || || Sbjct 12207883 GATGTACTGGGACATGAGAACACAGTTCATGCCAATCAAATTGACGGGCAGGGCTTCAGT 12207942 Query 127426 GATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGTGAATAGTGTCCACCCC 127485 || |||| ||| ||| || |||||||| |||| | ||| || || ||| | | Sbjct 12207943 GAGGAACTCCTGCTCGATTTCCACAGCATCCCTGATGATCTCGATGATGCGCTCC-CGCT 12208001 Query 127486 AGGTCTATTGCGTAAAGTCTTGA-AGAGTTCCACAGCAAACTCTTGGTGGAGACCCTCGT 127544 || | ||| | | ||| | | ||| ||||| || ||| ||||| |||| Sbjct 12208002 TGGGCCGCTGCACTAGATGGTGATACATGAGCACCGCAAAGTCGCAGTGAAGACCTTCGT 12208061 Query 127545 CACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACC 127604 |||||||||| || || || |||||| |||||| ||||||||||| |||||||||| || Sbjct 12208062 CACGGGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTTCTTCAGCC 12208121 Query 127605 AGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAATA 127664 | || |||| ||| |||| |||||||| || ||||| ||| || |||| | Sbjct 12208122 AAAAGATCGAGGCAAAGCTGCCACTAAAGAAGATTCCTTCCACGGCCGCAAAGGCAATAA 12208181 Query 127665 GACGCTCGGCAAAG 127678 ||||||||||||| Sbjct 12208182 TACGCTCGGCAAAG 12208195 >seq15 Length=6594820 Score = 107 bits (118), Expect = 2e-18 Identities = 183/263 (70%), Gaps = 2/263 (1%) Strand=Plus/Minus Query 175928 TCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATATTG 175987 || ||||| ||| | || || || || || ||||| | ||||| || | || || ||| Sbjct 6045835 TCCTTGCCGCCCGTCAGCCGAGTACCGAACTGACCGCGCGGCTCCAGCAAGTTTATGTTG 6045776 Query 175988 TTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTTCACC 176046 || || || | |||| | |||| || || || || ||| | ||||||||| || || Sbjct 6045775 TTCGAACCAACGTAGTTCTGGGCCAGATTCACGATAGTCATCTG-GAGGGAGACCTCGCC 6045717 Query 176047 GTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCTTCATCTCATC 176106 ||| |||||||||||| | |||||||| | | | || ||| |||||||| | ||| Sbjct 6045716 GTGGTGGTAGGCCGACATCTCCGCCACGGAGCCAGACAGCTGGGCCACCTTTACCTCGCG 6045657 Query 176107 CTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCCGTC 176166 |||| ||| | |||||| | |||||||||| | ||| ||||| ||||| || Sbjct 6045656 CTTGTCGTTGCGCTTGAAGCAAGTGAACATGACCTTGCGCTGGCCCGGCTTCAGGCCATC 6045597 Query 176167 GGCCATGTGTGCGATGGAACGCT 176189 ||| | | |||||| |||| Sbjct 6045596 CACCAGGCTGGGGATGGAGCGCT 6045574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613470466256400