Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017
65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq10 188 1e-42
>seq10
Length=19787792
Score = 188 bits (208), Expect = 1e-42
Identities = 535/810 (66%), Gaps = 24/810 (3%)
Strand=Plus/Plus
Query 159643 CACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAA 159702
||| |||||||| || ||||| ||||| || |||| || || |||||||| |||
Sbjct 12207757 CACCTTCTTCTCAAAGAAGTTTGTCTTTCCGTCCAGCGAGATCATCTCCATGAAATTGAA 12207816
Query 159703 TGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCAC 159762
|| ||||| || ||| ||| | ||||| || | |||| || || |||||
Sbjct 12207817 AGGATTCTTAGTGTTGTAGATCTTACCCACACCGAGCTCCCCTAGCAGCCGATCGGCCAC 12207876
Query 159763 AAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGC 159822
|| |||||||| |||| | ||||||| || || | || | ||||| || ||
Sbjct 12207877 GAACTCGATGTACTGGGACATGAGAACACAGTTCATGCCAATCAAATTGACGGGCAGGGC 12207936
Query 159823 TTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGA-GACACGTT 159881
||| | || ||||||| ||| || || || || || | | |||| ||| || || |
Sbjct 12207937 TTCAGTGAGGAACTCCTGCTCGATTTCCACAGCATCCCTGATGATCT-CGATGATGCGCT 12207995
Query 159882 CGTACCCCGGCT--TGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTG 159939
| | ||| ||| | | ||| | | ||| ||| |||||||||||||||
Sbjct 12207996 CCCGCTTGGGCCGCTGCACTAGATGGTG-----ATACATGAGCACCGCAAAGTCGCAGTG 12208050
Query 159940 CAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACG 159999
|| || ||||| || ||||| | ||||||||| | | | || || ||||||| |||||
Sbjct 12208051 AAGACCTTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACG 12208110
Query 160000 CGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGC 160059
| || |||||||| || | ||||| || ||||| ||||| || |||||||||||
Sbjct 12208111 CTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAAAGAAGATTCCTTCCACGGCCGC 12208170
Query 160060 AAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGG--GTCCACCTTTTGGCC 160117
||| || | | | ||| |||| ||| | | || || |||| |||||
Sbjct 12208171 AAAGGCAATAATACGCTCGGCAAAGTTGGC--CGATTTCGAGGATATCCAGGACATGGCC 12208228
Query 160118 CATTCAGCCTT---CTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCC 160174
|| || ||||| |||| | || ||||||| ||| | || || ||||| |||
Sbjct 12208229 CAGTCCGCCTTGCGCTTTAC--AGC-CGGCATGGTCTCAATAGCATTGAACAAGTAGTCG 12208285
Query 160175 TGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACA 160234
|||||| | ||| || || |||| ||| |||||| || | |||||||
Sbjct 12208286 CGCTCCTGCGGCTCCCGTATGTAGGTGTCAATGAGCACGCTGTACATCTCGGAGTGCACA 12208345
Query 160235 TTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTC-CAGATACTGCACCTCCTG 160293
|| || ||||| ||||| ||| |||||| | ||||| ||| ||||||||||||
Sbjct 12208346 TTCTCCATGGCTATCTGGAAGCCGTAGAAGCAACGTGCCTCTGTGAT-CTGCACCTCCTG 12208404
Query 160294 TGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAA 160353
| || | | ||||||| | ||||| | ||||| | ||| || ||||| ||||
Sbjct 12208405 ACTAAAGCGCTCGACCAGATTCTCGTTAACAATGCCGTCCGAGGCAGCGAAGAAGGCCAG 12208464
Query 160354 CACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTC 160413
||| || ||||| || | | ||||| | |||| | |||||| ||| ||||
Sbjct 12208465 CACATGGGAGATAAAGTAGCGCTCGTTGTCAGTGAGAC---GGGCCCAGTCCGTCGCGTC 12208521
Query 160414 TTGGGCCAAATCAACCTCTTCCGCGCTCCA 160443
| | | ||| ||||||||| | ||||
Sbjct 12208522 CTTTGATAGATCCACCTCTTCCACAGTCCA 12208551
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795107590082400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |