Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq10 188 1e-42 >seq10 Length=19787792 Score = 188 bits (208), Expect = 1e-42 Identities = 535/810 (66%), Gaps = 24/810 (3%) Strand=Plus/Plus Query 159643 CACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAA 159702 ||| |||||||| || ||||| ||||| || |||| || || |||||||| ||| Sbjct 12207757 CACCTTCTTCTCAAAGAAGTTTGTCTTTCCGTCCAGCGAGATCATCTCCATGAAATTGAA 12207816 Query 159703 TGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCAC 159762 || ||||| || ||| ||| | ||||| || | |||| || || ||||| Sbjct 12207817 AGGATTCTTAGTGTTGTAGATCTTACCCACACCGAGCTCCCCTAGCAGCCGATCGGCCAC 12207876 Query 159763 AAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGC 159822 || |||||||| |||| | ||||||| || || | || | ||||| || || Sbjct 12207877 GAACTCGATGTACTGGGACATGAGAACACAGTTCATGCCAATCAAATTGACGGGCAGGGC 12207936 Query 159823 TTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGA-GACACGTT 159881 ||| | || ||||||| ||| || || || || || | | |||| ||| || || | Sbjct 12207937 TTCAGTGAGGAACTCCTGCTCGATTTCCACAGCATCCCTGATGATCT-CGATGATGCGCT 12207995 Query 159882 CGTACCCCGGCT--TGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTG 159939 | | ||| ||| | | ||| | | ||| ||| ||||||||||||||| Sbjct 12207996 CCCGCTTGGGCCGCTGCACTAGATGGTG-----ATACATGAGCACCGCAAAGTCGCAGTG 12208050 Query 159940 CAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACG 159999 || || ||||| || ||||| | ||||||||| | | | || || ||||||| ||||| Sbjct 12208051 AAGACCTTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACG 12208110 Query 160000 CGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGC 160059 | || |||||||| || | ||||| || ||||| ||||| || ||||||||||| Sbjct 12208111 CTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAAAGAAGATTCCTTCCACGGCCGC 12208170 Query 160060 AAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGG--GTCCACCTTTTGGCC 160117 ||| || | | | ||| |||| ||| | | || || |||| ||||| Sbjct 12208171 AAAGGCAATAATACGCTCGGCAAAGTTGGC--CGATTTCGAGGATATCCAGGACATGGCC 12208228 Query 160118 CATTCAGCCTT---CTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCC 160174 || || ||||| |||| | || ||||||| ||| | || || ||||| ||| Sbjct 12208229 CAGTCCGCCTTGCGCTTTAC--AGC-CGGCATGGTCTCAATAGCATTGAACAAGTAGTCG 12208285 Query 160175 TGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACA 160234 |||||| | ||| || || |||| ||| |||||| || | ||||||| Sbjct 12208286 CGCTCCTGCGGCTCCCGTATGTAGGTGTCAATGAGCACGCTGTACATCTCGGAGTGCACA 12208345 Query 160235 TTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTC-CAGATACTGCACCTCCTG 160293 || || ||||| ||||| ||| |||||| | ||||| ||| |||||||||||| Sbjct 12208346 TTCTCCATGGCTATCTGGAAGCCGTAGAAGCAACGTGCCTCTGTGAT-CTGCACCTCCTG 12208404 Query 160294 TGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAA 160353 | || | | ||||||| | ||||| | ||||| | ||| || ||||| |||| Sbjct 12208405 ACTAAAGCGCTCGACCAGATTCTCGTTAACAATGCCGTCCGAGGCAGCGAAGAAGGCCAG 12208464 Query 160354 CACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTC 160413 ||| || ||||| || | | ||||| | |||| | |||||| ||| |||| Sbjct 12208465 CACATGGGAGATAAAGTAGCGCTCGTTGTCAGTGAGAC---GGGCCCAGTCCGTCGCGTC 12208521 Query 160414 TTGGGCCAAATCAACCTCTTCCGCGCTCCA 160443 | | | ||| ||||||||| | |||| Sbjct 12208522 CTTTGATAGATCCACCTCTTCCACAGTCCA 12208551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795107590082400