Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq6 159 8e-34 seq12 152 1e-31 seq3 134 3e-26 >seq6 Length=9197557 Score = 159 bits (176), Expect = 8e-34 Identities = 166/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || | ||||||||||||||||| |||| ||||||||||| | ||| Sbjct 543913 CGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTG 543972 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| ||||||||||| |||||||||||||||||||||||||| ||| ||||| Sbjct 543973 CGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGAGGGATTCCC 544032 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| ||| || | |||||| | || || || |||| Sbjct 544033 TCCTTGTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGG 544092 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || | ||||||||||| ||||| Sbjct 544093 GTGATGGTTTTTCCGGTCAAGGTTTTCACAAAGATTTG 544130 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || | ||||||||||||||||| |||| ||||||||| | | ||| Sbjct 542317 CGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTG 542376 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||||||||||||||| || ||||||||||||||||||||||| || ||||| Sbjct 542377 CGGCCATCTTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCC 542436 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| |||||| || | |||||| | | ||| || |||| Sbjct 542437 TCCTTGTCCTGAATCTTGGCTTTCACGTTCTCAATGGTGTCAGAAGGTTCGACCTCCAGG 542496 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || ||||| ||||| |||||||| Sbjct 542497 GTAATAGTTTTTCCAGTCAGAGTCTTCACGAAAATTTG 542534 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || | ||||||||||||||||| |||| ||||||||| | | ||| Sbjct 542545 CGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTG 542604 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| ||||||||||| |||||||||||||||||||||||||| || ||||| Sbjct 542605 CGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGATTCCC 542664 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||||||| || | |||||| | || || || |||| Sbjct 542665 TCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGG 542724 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || | ||||||||||| ||||| Sbjct 542725 GTGATGGTTTTTCCGGTCAAGGTTTTCACAAAGATTTG 542762 Score = 154 bits (170), Expect = 3e-32 Identities = 154/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || |||||||||||||| |||| ||||||||| | | ||| | ||||| ||||||||| Sbjct 542791 TGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTCCAGCTGC 542850 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || |||||||||||||||||||||||||| || ||||| || ||||| ||||| Sbjct 542851 TTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGGATCTTG 542910 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||||||| || | |||||| | || || || |||| ||||| || || || || Sbjct 542911 GCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGTGATGGTTTTTCCGGTC 542970 Query 199607 AGAGTTTTCACAAAAATTTG 199626 | ||||||||||||||||| Sbjct 542971 AAGGTTTTCACAAAAATTTG 542990 Score = 154 bits (170), Expect = 3e-32 Identities = 154/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || |||||||||||||| |||| ||||||||| | | ||| | ||||| ||||||||| Sbjct 543019 TGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTCCAGCTGC 543078 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 ||||||||||||||||||||||||||||| || ||||| || ||||| ||||| Sbjct 543079 TTTCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGGATCTTG 543138 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||||||| || | |||||| | || || || |||| ||||| || || || || Sbjct 543139 GCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGTGATGGTTTTTCCGGTC 543198 Query 199607 AGAGTTTTCACAAAAATTTG 199626 | ||||||||||| ||||| Sbjct 543199 AAGGTTTTCACAAAGATTTG 543218 Score = 154 bits (170), Expect = 3e-32 Identities = 154/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || |||||||||||||| |||| ||||||||| | | ||| | ||||| ||||||||| Sbjct 543247 TGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTCCAGCTGC 543306 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || |||||||||||||||||||||||||| || ||||| || ||||| ||||| Sbjct 543307 TTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATCTTG 543366 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||||||| || | |||||| | || || || |||| ||||| || || || || Sbjct 543367 GCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGTGATGGTTTTTCCGGTC 543426 Query 199607 AGAGTTTTCACAAAAATTTG 199626 | ||||||||||||||||| Sbjct 543427 AAGGTTTTCACAAAAATTTG 543446 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || | ||||||||||||||||| |||| ||||||||| | | ||| Sbjct 543685 CGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTG 543744 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| ||||||||||| |||||||||||||||||||||||||| || ||||| Sbjct 543745 CGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGATTCCC 543804 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||||||| || | |||||| | || || || |||| Sbjct 543805 TCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGG 543864 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || | ||||||||||| ||||| Sbjct 543865 GTGATGGTTTTTCCGGTCAAGGTTTTCACAAAGATTTG 543902 Score = 150 bits (166), Expect = 4e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || | ||||||||||||||||| |||| ||||||||| | | ||| Sbjct 543457 CGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTG 543516 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| ||||||||||| |||||||||||||||||||||||||| || ||||| Sbjct 543517 CGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGATTCCC 543576 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||||||| || | |||||| | || || || |||| Sbjct 543577 TCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGG 543636 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || ||||| ||||| || || || Sbjct 543637 GTGATGGTTTTTCCAGTCAGAGTCTTCACGAAGATCTG 543674 Score = 147 bits (162), Expect = 5e-30 Identities = 169/227 (74%), Gaps = 3/227 (1%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || | ||||||||||||||||| |||| ||||||||| | | ||| Sbjct 544141 CGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTG 544200 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| ||||| ||||| |||||||||||||||||||||||||| || ||||| Sbjct 544201 CGGCCATCCTCCAGTTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCC 544260 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||||||| || | |||||| | || || || |||| Sbjct 544261 TCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGG 544320 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 ||||| || || || || | ||||||||||| || || |||||| Sbjct 544321 GTGATGGTTTTTCCAGTCAAGGTTTTCACAAAGATCTG---CATTTT 544364 >seq12 Length=1235759 Score = 152 bits (168), Expect = 1e-31 Identities = 165/218 (76%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || ||||||||||| |||| ||||||||| | || ||| | ||||| Sbjct 219379 AGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCC 219320 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| ||||||||||| ||||||||||| || || ||| || || ||| Sbjct 219319 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 219260 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| |||||| | | || || ||||| ||||| ||| Sbjct 219259 TGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTC 219200 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 || || |||||||||||||| || ||||| |||||| Sbjct 219199 TTGCCAGTGAGAGTTTTCACGAAGATTTG---CATTTT 219165 >seq3 Length=12541198 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | |||||| ||||||||||| |||| ||||||||| | |||||| | ||| || Sbjct 3175236 AGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCC 3175177 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| ||||||||||| | ||||||||| || || ||| || || ||| Sbjct 3175176 TCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 3175117 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| |||||| | | || || || | ||||| ||| Sbjct 3175116 TGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGTC 3175057 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| || ||||| || || Sbjct 3175056 TTGCCAGTCAGAGTCTTGACAAAGATCTG 3175028 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| | ||| |||||||| |||| |||||| || | |||||| Sbjct 3175929 CGAAGACGCAATACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAATCGGACAAAGTA 3175870 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||| || ||||||||||| ||||||||||| | ||||||||| || || ||| || Sbjct 3175869 CGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCC 3175810 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || |||| |||||| | | || || || | Sbjct 3175809 TCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGG 3175750 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || ||||| || ||||| || || Sbjct 3175749 GTGATGGTCTTGCCAGTCAGAGTCTTGACAAAGATCTG 3175712 Score = 120 bits (132), Expect = 7e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || |||||||| |||| ||||||||| | |||||| | ||| || ||||||||||| ||| Sbjct 3174309 GTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCCTCCAGCTGCTTGCCG 3174250 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 |||||||| | ||||||||| || || ||| || || ||||| ||||| ||| Sbjct 3174249 GCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTG 3174190 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 || |||| |||||| | | || || || | ||||| ||||| || || ||||| Sbjct 3174189 ACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATAGTCTTGCCAGTCAGAGTC 3174130 Query 199613 TTCACAAAAATTTG 199626 || ||||| || || Sbjct 3174129 TTGACAAAGATCTG 3174116 Score = 120 bits (132), Expect = 7e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || |||||||| |||| ||||||||| | |||||| | ||| || ||||||||||| ||| Sbjct 3174993 GTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCCTCCAGCTGCTTGCCG 3174934 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 |||||||| | ||||||||| || || ||| || || ||||| ||||| ||| Sbjct 3174933 GCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTG 3174874 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 || |||| |||||| | | || || || | ||||| ||||| || || ||||| Sbjct 3174873 ACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGAGTC 3174814 Query 199613 TTCACAAAAATTTG 199626 || ||||| || || Sbjct 3174813 TTGACAAAGATCTG 3174800 Score = 120 bits (132), Expect = 7e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || |||||||| |||| ||||||||| | |||||| | ||| || ||||||||||| ||| Sbjct 3175677 GTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCCTCCAGCTGCTTGCCG 3175618 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 |||||||| | ||||||||| || || ||| || || ||||| ||||| ||| Sbjct 3175617 GCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTG 3175558 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 || |||| |||||| | | || || || | ||||| ||||| || || ||||| Sbjct 3175557 ACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGAGTC 3175498 Query 199613 TTCACAAAAATTTG 199626 || ||||| || || Sbjct 3175497 TTGACAAAGATCTG 3175484 Score = 116 bits (128), Expect = 9e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || |||||||| |||| |||||| || | |||||| | ||| || ||||||||||| ||| Sbjct 3174537 GTGGACTCCTTCTGGATGTTGTAATCGGACAAAGTACGTCCGTCCTCCAGCTGCTTGCCG 3174478 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 |||||||| | ||||||||| || || ||| || || ||||| ||||| ||| Sbjct 3174477 GCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTG 3174418 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 || |||| |||||| | | || || || | ||||| ||||| || || ||||| Sbjct 3174417 ACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGAGTC 3174358 Query 199613 TTCACAAAAATTTG 199626 || ||||| || || Sbjct 3174357 TTGACAAAGATCTG 3174344 Score = 116 bits (128), Expect = 9e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || |||||||| |||| |||||| || | |||||| | ||| || ||||||||||| ||| Sbjct 3174765 GTGGACTCCTTCTGGATGTTGTAATCGGACAAAGTACGTCCGTCCTCCAGCTGCTTGCCG 3174706 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 |||||||| | ||||||||| || || ||| || || ||||| ||||| ||| Sbjct 3174705 GCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTG 3174646 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 || |||| |||||| | | || || || | ||||| ||||| || || ||||| Sbjct 3174645 ACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGAGTC 3174586 Query 199613 TTCACAAAAATTTG 199626 || ||||| || || Sbjct 3174585 TTGACAAAGATCTG 3174572 Score = 116 bits (128), Expect = 9e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || |||||||| |||| |||||| || | |||||| | ||| || ||||||||||| ||| Sbjct 3175449 GTGGACTCCTTCTGGATGTTGTAATCGGACAAAGTACGTCCGTCCTCCAGCTGCTTGCCG 3175390 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 |||||||| | ||||||||| || || ||| || || ||||| ||||| ||| Sbjct 3175389 GCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTG 3175330 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 || |||| |||||| | | || || || | ||||| ||||| || || ||||| Sbjct 3175329 ACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGAGTC 3175270 Query 199613 TTCACAAAAATTTG 199626 ||||| || || || Sbjct 3175269 TTCACGAAGATCTG 3175256 Score = 109 bits (120), Expect = 1e-18 Identities = 148/206 (72%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || |||||||| |||| |||||| || | ||| || | ||| || ||||||||||| ||| Sbjct 3174081 GTGGACTCCTTCTGGATGTTGTAATCGGACAAGGTACGTCCGTCCTCCAGCTGCTTGCCG 3174022 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 |||||||| | ||||||||| || || ||| || || ||||| ||||| ||| Sbjct 3174021 GCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTG 3173962 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 || |||| |||||| | | || || || | ||||| ||||| || || || || Sbjct 3173961 ACATTCTCGATGGTGTCCGAGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTC 3173902 Query 199613 TTCACAAAAATTTGGTACATTTTAGC 199638 ||||| || || || |||||| || Sbjct 3173901 TTCACGAAGATCTG---CATTTTGGC 3173879 Score = 89.7 bits (98), Expect = 1e-12 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 ||||||||||| |||||| |||| || ||| | |||||| ||||||||||| ||||||| Sbjct 3175838 ATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGATTACAACATCCAGAAG 3175897 Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 ||||| ||| | ||| | || ||| | ||||| Sbjct 3175898 GAGTCCACTTTGCACTTGGTATTGCGTCTTCG 3175929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178849247370930