Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017
65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq9 190 2e-42
seq1665 120 2e-21
>seq9
Length=30819483
Score = 190 bits (210), Expect = 2e-42
Identities = 566/869 (65%), Gaps = 12/869 (1%)
Strand=Plus/Minus
Query 517851 AATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 517910
|||| | || ||||||| ||| |||| ||||| | | || || || || || || |
Sbjct 28008057 AATCGGTACCCTCGAACAGAGAGTCAATCTCAATGCTGGCCTGGGTGGACGACGAGAGGG 28007998
Query 517911 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTA----AGGCTT-TTGCTGATTG 517965
||| || || || || || || || | || | || | | |||| |||||| |
Sbjct 28007997 TACGCTTTGCGCGCTCGCAGGCGGTGCGCAGACGACGCAGAGCACGCTTGTTGCTGGT-- 28007940
Query 517966 ATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATT 518025
|| || | || | || | |||||| || | ||| | || || ||||| ||
Sbjct 28007939 ---CAGGTCCTTCTTGTGCTTGCGCTTGAACTCCTGCACAAAGTGGGTCACTAGACGGTT 28007883
Query 518026 ATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCC 518085
|| ||||| ||||| || | | |||| || | ||||| | | || | ||| | ||
Sbjct 28007882 GTCGAAATCCTCACCACCAAGATGGGTATCACCGGCCGTAGATTTGACCTCGAAGATGCC 28007823
Query 518086 ATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTAC 518145
|| || | |||| || | ||||| ||| || ||||||| ||| |||||||| ||
Sbjct 28007822 GTCATCGATCGACAGAATGGACACATCGAAGGTACCGCCACCCAGATCGAAAATAAGCAC 28007763
Query 518146 ATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTC 518205
|| || | || || || || ||||| || | |||||| || || || ||
Sbjct 28007762 GTTGCGCTCACCAACAGCCTTCTTGTCCAGGCCATAGGCGATAGCAGCGGCTGTGGGCTC 28007703
Query 518206 ATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCT 518265
|| || || | || ||||| | || ||||| | || ||||| || || || || |
Sbjct 28007702 GTTGATGATACGCAGCACATTCAATCCGGCAATGGTACCGGCATCCTTGGTCGCCTGACG 28007643
Query 518266 TTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAAT 518325
|| || ||||| || || || || ||||| || ||||||| || ||| || || |
Sbjct 28007642 CTGCGAGTCGTTGAAGTAGGCTGGCACAGTGATGACGGCATTGGTCACTGTCTTGCCCAG 28007583
Query 518326 ATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGA 518385
|| || || || | |||||||| | || | ||| || || || | || |||||
Sbjct 28007582 GTACGCCTCGGCGGTCTCCTTCATTTTGGTCAACACCATGGAGGAGATCTCCTC-GGGGA 28007524
Query 518386 ATATTG-CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAA 518444
| | | ||| |||| | || | || |||| | || || | | || | |
Sbjct 28007523 AGAAGGTCTTCTTCTCATCCTTGTACGTAACCTCAATCTTGGGCTTGCCATCTACGCTGA 28007464
Query 518445 TAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTAC 518504
|| | || ||||||| ||||| || || || ||| || | ||| | | ||
Sbjct 28007463 CCACATCGAAGGGCCAGTGCTTCATGTCAGACTGCACAGCAGAATCCTCAAACTTGCGAC 28007404
Query 518505 CAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGG 518564
|||| | || || ||||| || || || | |||||| || || || | |||| ||||
Sbjct 28007403 CAATCAGACGCTTGGCATCGAAGATCGTTTGGGTTGGGTTCATCGCCACCTGATTCTTGG 28007344
Query 518565 CTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGAT 518624
| ||||| ||||||| | | || || || || || | |||||| ||||| || || ||||
Sbjct 28007343 CGGCATCACCAATCAAACGCTCCGTGTCCGTGAAGGCAACATAGGATGGTGTCGTACGAT 28007284
Query 518625 TACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAA 518684
|||| || || || ||||| || || || || |||| || | ||||| ||||||
Sbjct 28007283 TACCCTGGTCGTTGGCAATGATCTCGACCTTGCCATGCTGGAACACACCCACACAAGAGT 28007224
Query 518685 AAGTTGTTCCTAAATCAATACCAATAGCA 518713
| ||||| || ||||||||||||| ||||
Sbjct 28007223 AGGTTGTGCCCAAATCAATACCAACAGCA 28007195
Score = 107 bits (118), Expect = 1e-17
Identities = 447/703 (64%), Gaps = 2/703 (0%)
Strand=Plus/Plus
Query 518012 GTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTT 518071
|| || ||||| || || ||||| ||||| || | | |||| || | ||||| | |
Sbjct 27747872 GTCACTAGACGGTTGTCGAAATCCTCACCACCAAGATGGGTATCACCGGCCGTAGATTTG 27747931
Query 518072 ACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATA 518131
|| | ||| | ||||| | | || | || | ||||| ||| || ||||||| |
Sbjct 27747932 ACCTTGAAGATGCCATCATTGATCGAAAGAATGGACACATCGAAGGTACCGCCACCCAGA 27747991
Query 518132 TCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCA 518191
|| |||||||| || || || | || || || || ||||| || | |||
Sbjct 27747992 TCGAAAATAAGCACGTTGCGCTCACCAACAGCCTTCTTGTCCAGGCCATAGGCGATTGCA 27748051
Query 518192 GCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCT 518251
|| || || || || || || || | || || || | ||| || || | || |||||
Sbjct 27748052 GCGGCCGTGGGCTCGTTGATGATACGCAGGACTTTCAAACCGGCGATGGTACCGGCATCC 27748111
Query 518252 TTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTT 518311
|| || || || | || || ||||| || | || || |||| || || || | ||
Sbjct 27748112 TTGGTAGCCTGACGCTGCGAGTCGTTGAAGTGGGCTGGCACAGAGATGACAGCTTTGGTC 27748171
Query 518312 ACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAA 518371
|| || || | || | || || | |||||||| | || | ||| | ||
Sbjct 27748172 ACCGTCTTGCCCAGGTACTCCTCGGCGGTCTCCTTCATTTTGGTCAACACCATGGCAGAG 27748231
Query 518372 ATTTGTTCTGGGGAATATTG-CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTT 518430
|| | || || ||| | | ||| || | | || | || |||| | || ||
Sbjct 27748232 ATCTCCTC-GGCGAAGAAGGTCTTCTTCTCGTCCTTGTACGTAACCTCAATCTTGGGCTT 27748290
Query 518431 ATTACCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTC 518490
| ||| | | || | || |||||||| ||||| || | || ||| ||
Sbjct 27748291 GCCGTCTACACTGACCACATCGAAGGGCCAGTACTTCATGTCAGCCTGGACAGCAGAATC 27748350
Query 518491 ATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGC 518550
||||| | | |||||| | || || | || || || | | | |||| || | |
Sbjct 27748351 CTTAAACTTGCGACCAATCAGACGCTTCGATTCGAAGATCCTCTGGTTTGGGTTCACCGT 27748410
Query 518551 AGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGA 518610
| || | ||||| ||||| ||||||| | || || || || || | |||||| ||
Sbjct 27748411 CACCTGGTTCTTGGCGGCATCACCAATCAAGCGCTCCGTATCCGTGAAGGCAACATAGGA 27748470
Query 518611 TGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATAC 518670
|| || || |||||||| || || || ||||| || || || || ||||| || | ||
Sbjct 27748471 TGATGTGGTACGATTACCCTGGTCGTTGGCAATGATCTCGACCTTGCCATTCTGGAACAC 27748530
Query 518671 ACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 518713
||| ||||| | |||||| || ||||||||||||||||||
Sbjct 27748531 ACCCACACAGCAGTGAGTTGTGCCCAAATCAATACCAATAGCA 27748573
>seq1665
Length=7720
Score = 120 bits (132), Expect = 2e-21
Identities = 125/164 (76%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 870803 GTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGATCAACT 870862
|| |||| |||||| || ||||| || || | |||||| |||| || ||| | || ||
Sbjct 6624 GTGGATTTTTCTTCACCTAATATAGCCAAGCAGATGCATGTTGGTCACTTACGCTCTACA 6683
Query 870863 ATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACACGATGTTTATCGTATT 870922
|||||||| ||||| |||| | || | ||| | | |||||| || ||||||
Sbjct 6684 ATTATTGGCGAATCAGTTTGCCGCTTACTGGAATTTTTGCAACACGACGTAATTCGTATA 6743
Query 870923 AATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGC 870966
|||||| | |||||||||||||| ||||||||||||||||||||
Sbjct 6744 AATCATCTTGGTGATTGGGGAACACAATTCGGTATGTTAATTGC 6787
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3780584704421740
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |