Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq9 190 2e-42 seq1665 120 2e-21 >seq9 Length=30819483 Score = 190 bits (210), Expect = 2e-42 Identities = 566/869 (65%), Gaps = 12/869 (1%) Strand=Plus/Minus Query 517851 AATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 517910 |||| | || ||||||| ||| |||| ||||| | | || || || || || || | Sbjct 28008057 AATCGGTACCCTCGAACAGAGAGTCAATCTCAATGCTGGCCTGGGTGGACGACGAGAGGG 28007998 Query 517911 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTA----AGGCTT-TTGCTGATTG 517965 ||| || || || || || || || | || | || | | |||| |||||| | Sbjct 28007997 TACGCTTTGCGCGCTCGCAGGCGGTGCGCAGACGACGCAGAGCACGCTTGTTGCTGGT-- 28007940 Query 517966 ATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATT 518025 || || | || | || | |||||| || | ||| | || || ||||| || Sbjct 28007939 ---CAGGTCCTTCTTGTGCTTGCGCTTGAACTCCTGCACAAAGTGGGTCACTAGACGGTT 28007883 Query 518026 ATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCC 518085 || ||||| ||||| || | | |||| || | ||||| | | || | ||| | || Sbjct 28007882 GTCGAAATCCTCACCACCAAGATGGGTATCACCGGCCGTAGATTTGACCTCGAAGATGCC 28007823 Query 518086 ATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTAC 518145 || || | |||| || | ||||| ||| || ||||||| ||| |||||||| || Sbjct 28007822 GTCATCGATCGACAGAATGGACACATCGAAGGTACCGCCACCCAGATCGAAAATAAGCAC 28007763 Query 518146 ATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTC 518205 || || | || || || || ||||| || | |||||| || || || || Sbjct 28007762 GTTGCGCTCACCAACAGCCTTCTTGTCCAGGCCATAGGCGATAGCAGCGGCTGTGGGCTC 28007703 Query 518206 ATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCT 518265 || || || | || ||||| | || ||||| | || ||||| || || || || | Sbjct 28007702 GTTGATGATACGCAGCACATTCAATCCGGCAATGGTACCGGCATCCTTGGTCGCCTGACG 28007643 Query 518266 TTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAAT 518325 || || ||||| || || || || ||||| || ||||||| || ||| || || | Sbjct 28007642 CTGCGAGTCGTTGAAGTAGGCTGGCACAGTGATGACGGCATTGGTCACTGTCTTGCCCAG 28007583 Query 518326 ATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGA 518385 || || || || | |||||||| | || | ||| || || || | || ||||| Sbjct 28007582 GTACGCCTCGGCGGTCTCCTTCATTTTGGTCAACACCATGGAGGAGATCTCCTC-GGGGA 28007524 Query 518386 ATATTG-CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAA 518444 | | | ||| |||| | || | || |||| | || || | | || | | Sbjct 28007523 AGAAGGTCTTCTTCTCATCCTTGTACGTAACCTCAATCTTGGGCTTGCCATCTACGCTGA 28007464 Query 518445 TAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTAC 518504 || | || ||||||| ||||| || || || ||| || | ||| | | || Sbjct 28007463 CCACATCGAAGGGCCAGTGCTTCATGTCAGACTGCACAGCAGAATCCTCAAACTTGCGAC 28007404 Query 518505 CAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGG 518564 |||| | || || ||||| || || || | |||||| || || || | |||| |||| Sbjct 28007403 CAATCAGACGCTTGGCATCGAAGATCGTTTGGGTTGGGTTCATCGCCACCTGATTCTTGG 28007344 Query 518565 CTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGAT 518624 | ||||| ||||||| | | || || || || || | |||||| ||||| || || |||| Sbjct 28007343 CGGCATCACCAATCAAACGCTCCGTGTCCGTGAAGGCAACATAGGATGGTGTCGTACGAT 28007284 Query 518625 TACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAA 518684 |||| || || || ||||| || || || || |||| || | ||||| |||||| Sbjct 28007283 TACCCTGGTCGTTGGCAATGATCTCGACCTTGCCATGCTGGAACACACCCACACAAGAGT 28007224 Query 518685 AAGTTGTTCCTAAATCAATACCAATAGCA 518713 | ||||| || ||||||||||||| |||| Sbjct 28007223 AGGTTGTGCCCAAATCAATACCAACAGCA 28007195 Score = 107 bits (118), Expect = 1e-17 Identities = 447/703 (64%), Gaps = 2/703 (0%) Strand=Plus/Plus Query 518012 GTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTT 518071 || || ||||| || || ||||| ||||| || | | |||| || | ||||| | | Sbjct 27747872 GTCACTAGACGGTTGTCGAAATCCTCACCACCAAGATGGGTATCACCGGCCGTAGATTTG 27747931 Query 518072 ACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATA 518131 || | ||| | ||||| | | || | || | ||||| ||| || ||||||| | Sbjct 27747932 ACCTTGAAGATGCCATCATTGATCGAAAGAATGGACACATCGAAGGTACCGCCACCCAGA 27747991 Query 518132 TCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCA 518191 || |||||||| || || || | || || || || ||||| || | ||| Sbjct 27747992 TCGAAAATAAGCACGTTGCGCTCACCAACAGCCTTCTTGTCCAGGCCATAGGCGATTGCA 27748051 Query 518192 GCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCT 518251 || || || || || || || || | || || || | ||| || || | || ||||| Sbjct 27748052 GCGGCCGTGGGCTCGTTGATGATACGCAGGACTTTCAAACCGGCGATGGTACCGGCATCC 27748111 Query 518252 TTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTT 518311 || || || || | || || ||||| || | || || |||| || || || | || Sbjct 27748112 TTGGTAGCCTGACGCTGCGAGTCGTTGAAGTGGGCTGGCACAGAGATGACAGCTTTGGTC 27748171 Query 518312 ACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAA 518371 || || || | || | || || | |||||||| | || | ||| | || Sbjct 27748172 ACCGTCTTGCCCAGGTACTCCTCGGCGGTCTCCTTCATTTTGGTCAACACCATGGCAGAG 27748231 Query 518372 ATTTGTTCTGGGGAATATTG-CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTT 518430 || | || || ||| | | ||| || | | || | || |||| | || || Sbjct 27748232 ATCTCCTC-GGCGAAGAAGGTCTTCTTCTCGTCCTTGTACGTAACCTCAATCTTGGGCTT 27748290 Query 518431 ATTACCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTC 518490 | ||| | | || | || |||||||| ||||| || | || ||| || Sbjct 27748291 GCCGTCTACACTGACCACATCGAAGGGCCAGTACTTCATGTCAGCCTGGACAGCAGAATC 27748350 Query 518491 ATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGC 518550 ||||| | | |||||| | || || | || || || | | | |||| || | | Sbjct 27748351 CTTAAACTTGCGACCAATCAGACGCTTCGATTCGAAGATCCTCTGGTTTGGGTTCACCGT 27748410 Query 518551 AGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGA 518610 | || | ||||| ||||| ||||||| | || || || || || | |||||| || Sbjct 27748411 CACCTGGTTCTTGGCGGCATCACCAATCAAGCGCTCCGTATCCGTGAAGGCAACATAGGA 27748470 Query 518611 TGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATAC 518670 || || || |||||||| || || || ||||| || || || || ||||| || | || Sbjct 27748471 TGATGTGGTACGATTACCCTGGTCGTTGGCAATGATCTCGACCTTGCCATTCTGGAACAC 27748530 Query 518671 ACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 518713 ||| ||||| | |||||| || |||||||||||||||||| Sbjct 27748531 ACCCACACAGCAGTGAGTTGTGCCCAAATCAATACCAATAGCA 27748573 >seq1665 Length=7720 Score = 120 bits (132), Expect = 2e-21 Identities = 125/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 870803 GTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGATCAACT 870862 || |||| |||||| || ||||| || || | |||||| |||| || ||| | || || Sbjct 6624 GTGGATTTTTCTTCACCTAATATAGCCAAGCAGATGCATGTTGGTCACTTACGCTCTACA 6683 Query 870863 ATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACACGATGTTTATCGTATT 870922 |||||||| ||||| |||| | || | ||| | | |||||| || |||||| Sbjct 6684 ATTATTGGCGAATCAGTTTGCCGCTTACTGGAATTTTTGCAACACGACGTAATTCGTATA 6743 Query 870923 AATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGC 870966 |||||| | |||||||||||||| |||||||||||||||||||| Sbjct 6744 AATCATCTTGGTGATTGGGGAACACAATTCGGTATGTTAATTGC 6787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780584704421740