Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq9 334 1e-86 seq3 145 1e-29 >seq9 Length=30819483 Score = 334 bits (370), Expect = 1e-86 Identities = 756/1127 (67%), Gaps = 12/1127 (1%) Strand=Plus/Minus Query 7019 AAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTA 7078 ||||||||||| ||||| | || || || || || ||||||||||| || |||| || Sbjct 28008319 AAGATGGCGGCCTGGACGGCGGCACCATAGGCAACAGCCTCATCGGGATTGATCGACTTG 28008260 Query 7079 TTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTC 7138 ||||| || || ||||| || |||| | || | || | || ||||| || || Sbjct 28008259 TTCAGCTCCTTGCCGTTGAACAGATCCTGGAGCAGGCGCTGCACCTTGGGGATACGGGTG 28008200 Query 7139 GATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGT 7198 || |||||||||| || || || | | ||| || || | ||| | ||| || || Sbjct 28008199 GAGCCACCGACCAGCACAATGTCGTGGATGGCCGACTTGTCCAGCTTGGCGTCACGCAGA 28008140 Query 7199 GTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGT 7258 | || || || || ||||| | ||||||| || ||| ||||| ||||| Sbjct 28008139 GCCTTCTCCACGGGGTCCATGGTGCTGCGGAACAGATCGGCGTTCAGCTCCTCGAAACGG 28008080 Query 7259 GCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTT 7318 ||||| || || || || |||||||| || ||| | | || ||||| |||||| | Sbjct 28008079 GCACGAGTGATCGAGGTGTAGAAATCGGTACCCTCGAACAGAGAGTCAATCTCAATGCTG 28008020 Query 7319 GTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGA 7378 | || | | ||| || | || |||||||||||||| || || || || | |||||| Sbjct 28008019 GCCTGGGTGGACGACGAGAGGGTACGCTTTGCGCGCTCGCAGGCGGTGCGCAGACGACGC 28007960 Query 7379 AGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACT-CTTCAGAGAA 7437 || |||||| ||| | || | || ||||| || || || || |||| || || | || Sbjct 28007959 AGAGCACGCTTGTTGCTGGTCAGGTCCTTCTTGTGCTTGCGCTTGAACTCCTGCACA-AA 28007901 Query 7438 GTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGC 7497 ||| | || | |||||||| |||||||| | || ||||| || || || | Sbjct 28007900 GTGGGTCACTAGACGGTTGTCGAAATCCTCACCACCAAGATGGGTATCACCGGCCGTAGA 28007841 Query 7498 TTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACC 7557 |||||| || ||||| || | || || | | || ||||| || ||||| ||||| Sbjct 28007840 TTTGACCTCGAAGATGCCGTCATCGATCGACAGAATGGACACATCGAAGGTACCGCCACC 28007781 Query 7558 CAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGAT 7617 ||| || ||||| || ||||| || | | ||||| || || || || ||||| Sbjct 28007780 CAGATCGAAAATAAGCACGTTGCGCTCACCAACAGCCTTCTTGTCCAGGCCATAGGCGAT 28007721 Query 7618 AGCCGCCGCCGTTGGTTCATTAATAATACGAAG-ACAGTTCAGGCCAGCAATAGTTGCCG 7676 ||| || || || || || || || ||||| || ||| |||| || ||||| || | | Sbjct 28007720 AGCAGCGGCTGTGGGCTCGTTGATGATACGCAGCACA-TTCAATCCGGCAATGGTACCGG 28007662 Query 7677 CATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGT 7736 |||| || ||||| || || ||||| ||||| |||||||| || || || | ||| || | Sbjct 28007661 CATCCTTGGTCGCCTGACGCTGCGAGTCGTTGAAGTAGGCTGGCACAGTGATGACGGCAT 28007602 Query 7737 CCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCG 7796 || ||| |||| || || |||| || ||| | || ||||||||||| | ||||| | Sbjct 28007601 TGGTCACTGTCTTGCCCAGGTACGCCTCGGCGGTCTCCTTCATTTTGGTCAACACCATGG 28007542 Query 7797 ATGAAATCTCTTCAGCCGCAAACTGT-TTCGTTTCACCGTTAAAATCAACTTCAATCATG 7855 | || ||||| || | | | | || ||| | ||| | || | ||| |||||| || Sbjct 28007541 AGGAGATCTCCTC-GGGGAAGAAGGTCTTCTTCTCATCCTTGTACGTAACCTCAATCTTG 28007483 Query 7856 GGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACC 7915 || || || | || || || | | | ||| | ||||| || || || Sbjct 28007482 GGCTT---GCCATCTACGCTGACCACATCGAAGGGCCAGTGCTTCATGTCAGACTGCACA 28007426 Query 7916 TGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGG 7975 ||| |||||| | || || |||||||| ||||| || | || | | ||| Sbjct 28007425 GCAGAATCCTCAAACTTGCGACCAATCAGACGCTTGGCATCGAAGATCGTTTGGGTTGGG 28007366 Query 7976 TTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAAC 8035 ||||| || || ||||| || || || || || | ||| || | ||||| || Sbjct 28007365 TTCATCGCCACCTGATTCTTGGCGGCATCACCAATCAAACGCTC---CGTGTCCGTGAAG 28007309 Query 8036 GCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCG 8095 || || || ||||| ||||| ||||| || |||||||| ||||| || || || | | Sbjct 28007308 GCAACATAGGATGGTGTCGTACGATTACCCTGGTCGTTGGCAATGATCTCGACCTTGCCA 28007249 Query 8096 TTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACC 8142 | || | || || || || || || ||||| || ||||||||||| Sbjct 28007248 TGCTGGAACACACCCACACAAGAGTAGGTTGTGCCCAAATCAATACC 28007202 Score = 271 bits (300), Expect = 1e-67 Identities = 761/1156 (66%), Gaps = 24/1156 (2%) Strand=Plus/Plus Query 7019 AAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTA 7078 ||||||||||| ||||| | || || || || || ||||||||||| | ||||| || Sbjct 27747449 AAGATGGCGGCCTGGACGGCGGCGCCATAGGCAACAGCCTCATCGGGATCAATCGACTTG 27747508 Query 7079 TTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTC 7138 ||||| || || ||||| || |||| | || | || | || ||||| || || Sbjct 27747509 TTCAGCTCCTTGCCGTTGAACAGATCCTGGAGCAAGCGCTGCACCTTGGGGATACGGGTG 27747568 Query 7139 GATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGT 7198 || ||||||||||| || || || | | ||| || || | ||| | ||| || || Sbjct 27747569 GAGCCACCGACCAACACAATGTCGTGGATGGCCGACTTGTCCAGCTTGGCGTCACGCAGA 27747628 Query 7199 GTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGT 7258 | || || || || ||||| | ||||||| || ||| ||||| |||| Sbjct 27747629 GCCTTCTCCACGGGATCCATGGTGCTGCGGAACAGATCGGCGTTCAGCTCCTCGAAACTG 27747688 Query 7259 GCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTT 7318 ||||| || || || || |||||||| || ||| | | || ||||| ||||| | Sbjct 27747689 GCACGAGTGATCGAGGTGTAGAAATCGGTACCCTCGAACAGAGAGTCAATCTCAATTCTG 27747748 Query 7319 GTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGA 7378 | | | | ||| || | || |||||||||||||| || || || || | |||||| Sbjct 27747749 GCCAGAGTGGACGATGAGAGGGTGCGCTTTGCGCGCTCGCAGGCGGTGCGCAGACGACGC 27747808 Query 7379 AGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACT-CTTCAGAGAA 7437 || |||||| ||| | || | || ||||| || || || || |||| || || | || Sbjct 27747809 AGAGCACGCTTGTTGCTGGTCAGGTCCTTCTTGTGATTGCGATTGAACTCCTGCACA-AA 27747867 Query 7438 GTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGC 7497 ||| | || | |||||||| |||||||| | || ||||| || || || | Sbjct 27747868 GTGGGTCACTAGACGGTTGTCGAAATCCTCACCACCAAGATGGGTATCACCGGCCGTAGA 27747927 Query 7498 TTTGACTTCAAAGATACC-TCCTTCAATGTTTAACAA-CGAAACATCAAACGTACCACCA 7555 |||||| | ||||| || || || | | || || || ||||| || ||||| ||| Sbjct 27747928 TTTGACCTTGAAGATGCCATCATTGATCG--AAAGAATGGACACATCGAAGGTACCGCCA 27747985 Query 7556 CCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCG 7615 ||||| || ||||| || ||||| || | | ||||| || || || || ||| Sbjct 27747986 CCCAGATCGAAAATAAGCACGTTGCGCTCACCAACAGCCTTCTTGTCCAGGCCATAGGCG 27748045 Query 7616 ATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCC 7675 || || || ||||| || || || || ||||| || |||| || || || || | Sbjct 27748046 ATTGCAGCGGCCGTGGGCTCGTTGATGATACGCAGGACTTTCAAACCGGCGATGGTACCG 27748105 Query 7676 GCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCG 7735 ||||| || || || || || ||||| ||||| |||| ||| || || | | ||| || Sbjct 27748106 GCATCCTTGGTAGCCTGACGCTGCGAGTCGTTGAAGTGGGCTGGCACAGAGATGACAGCT 27748165 Query 7736 TCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATC 7795 | || || |||| || || ||| || ||| | || ||||||||||| | ||||| Sbjct 27748166 TTGGTCACCGTCTTGCCCAGGTACTCCTCGGCGGTCTCCTTCATTTTGGTCAACACCATG 27748225 Query 7796 GATGAAATCTCTTCAGCCGCAAACTGT-TTCGTTTCACCGTTAAAATCAACTTCAATCAT 7854 | || ||||| || | || | | || ||| | || | || | ||| |||||| | Sbjct 27748226 GCAGAGATCTCCTC-GGCGAAGAAGGTCTTCTTCTCGTCCTTGTACGTAACCTCAATCTT 27748284 Query 7855 GGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGAC 7914 ||| || | | ||| || || | | | ||| | ||||| || | ||||| Sbjct 27748285 GGGCTTGCCGTCTACAC---TGACCACATCGAAGGGCCAGTACTTCATGTCAGCCTGGAC 27748341 Query 7915 CTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAA--CTGTGTTTTTG 7972 ||| |||||| | || || |||||||| | || || | || || ||| Sbjct 27748342 AGCAGAATCCTTAAACTTGCGACCAATCAGACGCTTCGATTCGAAGATCCTCTGGTTT-- 27748399 Query 7973 GGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTA 8032 ||||||| | |||||||| || || || || || | || || || ||||| Sbjct 27748400 GGGTTCACCGTCACCTGGTTCTTGGCGGCATCACCAATCAAGCGCTCCGTA---TCCGTG 27748456 Query 8033 AACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGG 8092 || || || || |||| || || ||||| || |||||||| ||||| || || || | Sbjct 27748457 AAGGCAACATAGGATGATGTGGTACGATTACCCTGGTCGTTGGCAATGATCTCGACCTTG 27748516 Query 8093 TCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGAT------T 8146 | || || | || || || || | | ||||| || ||||||||||| || | Sbjct 27748517 CCATTCTGGAACACACCCACACAGCAGTGAGTTGTGCCCAAATCAATACCAATAGCAGGT 27748576 Query 8147 GCTTGAGTCATTTTAT 8162 |||| || ||| |||| Sbjct 27748577 GCTTCAGACATCTTAT 27748592 Score = 206 bits (228), Expect = 3e-48 Identities = 679/1039 (65%), Gaps = 31/1039 (3%) Strand=Plus/Plus Query 7124 TTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGAT-TTATCGAT 7182 || || || ||||| ||||| || |||| ||||| || | || | | | | || || || Sbjct 14411451 TTGGGAATGCGTGTTGATCCGCCCACCAGGACGATGTCGT-CAATCTTGCTCTTGTCCAT 14411509 Query 7183 CTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACA 7242 ||| | ||| || | || || || |||| || || ||||| | ||| || Sbjct 14411510 CTTGGCGTCGTTCAGGGCCTTCTCCACGGGTTGCAGGGTGTTCCGGAAGAGGTCTCCGCA 14411569 Query 7243 CAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGA 7302 || ||||| || || |||||| | | ||| ||||| || || ||| | | | Sbjct 14411570 TAGCTCCTCGAAGCGGGCACGGCTGACCTTTGTGTAGAAGTCGTGTCCCTCGAACAGGGC 14411629 Query 7303 ATCAATTTCAATGGTTGTTT--GTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACAC 7360 ||| | ||| ||||||| | |||| | ||||| | ||||||||| || |||||| Sbjct 14411630 ATCCACTTCGATGGTTGCCTCAGTGCTG--GAAGACAGCGTTCGCTTGGCCCGCTCAGCT 14411687 Query 7361 GCCGTTCGTAAACGACGAAGGGCACGCGGGTT--ACCGGAAATATCTTTCTTATGTTTAC 7418 || || || | ||| || |||||||| || || | || || | | ||||| || | Sbjct 14411688 GCGGTGCGGAGACGGCGCAGGGCACGAGGATTGGAGCGCAAGT--CCTTCTTGAACTTTC 14411745 Query 7419 GTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGT 7478 | || ||||| || | | ||| | ||||| || || || || |||||||||| Sbjct 14411746 GCTTGAACTCCTCCGCCAGGTGGTTCACCAGTCTGTTGTCAAAGTCCTCGCCACCCAAGT 14411805 Query 7479 GTGTATCCCCCGCGGTCGCTTTGACTTCAAA----GATACCTCCTTCAATGTTTAACAAC 7534 | || || || || || || || || || ||| ||| | || ||| | | | Sbjct 14411806 GAGTGTCTCCGGCAGTGGCGCGCACCTCGAACAGCGAT-CCTTCGTCGATGGTCAGAATA 14411864 Query 7535 GAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCG-TCGTCTTT 7593 || |||||||| || || |||||||| || || || || || || || || | || Sbjct 14411865 GAGACATCAAAGGTGCCGCCACCCAGATCGAAGATCAGCACATTG----CGCTCCCCCTT 14411920 Query 7594 G---TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAG 7650 | ||||| || || || || || | ||| || ||||| || || || || || || | Sbjct 14411921 GAGATTCTTGTCCAGGCCATATGCCAGAGCTGCTGCCGTCGGCTCGTTGATGATGCGCA- 14411979 Query 7651 ACA-GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAA 7709 ||| ||| ||||| || || | | | |||||||| || || || || || || ||||||| Sbjct 14411980 ACACGTTGAGGCCGGCGATGGCTCCGGCATCTTTGGTGGCCTGGCGCTGGGAGTCGTTAA 14412039 Query 7710 AGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGA 7769 |||| || || || || | || ||||| ||| | || || |||| || || Sbjct 14412040 AGTACGCTGGCACTGTGATAACTGCGTCGCGCACTGAGGTGCCCAGGTACGCCTCGGCCG 14412099 Query 7770 TATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTT 7829 | || ||||| ||| || |||||||| || || || | ||||| | ||| | Sbjct 14412100 TCTCCTTCATCTTGACGAGCACCATCGAGCTGATTTCCTCCGGGGCAAAGCGCTTCACCT 14412159 Query 7830 CACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACG 7889 | || || || ||||| ||| | || || |||||| || || ||||| | | Sbjct 14412160 CGCCCTTGAACTCAACACTCATCTTTGGCTT-GCCGCAG--TCGTTGACCACCTTGAAGG 14412216 Query 7890 ACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCT 7949 ||| | ||||| || || |||| || ||| ||||| | || || || |||| Sbjct 14412217 GCCAGTGCTTCATGTCATCCTGGATCTTCGAGTCGTCGAACTTGCGCCCAATCAGGCGCT 14412276 Query 7950 TTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGA 8009 | || || || || |||| || || ||||| || |||||||| || ||||| |||| Sbjct 14412277 TGGCGTCGAACACACTGTTCTTCGGATTCATCGCCACCTGGTTCTTGGCGGCGTCTCCGA 14412336 Query 8010 TAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGT 8069 | || || || | || || || || || || || || || || || || || | Sbjct 14412337 TGAGGCGCTCCGAA---TCGGTGAATGCCACATAACTGGGCGTTGTGCGGTTTCCCTGAT 14412393 Query 8070 CGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTC 8129 |||| || || ||||| || ||| || |||| ||||||||||| ||||| || | Sbjct 14412394 CGTTGGCGATTATTTCCACCTTTCCGTGCTGGAAGACACCGACGCACGAGTACGTGGTGC 14412453 Query 8130 CTAAATCAATACCGATTGC 8148 | || ||||| || || || Sbjct 14412454 CCAAGTCAATGCCAATGGC 14412472 Score = 190 bits (210), Expect = 3e-43 Identities = 601/917 (66%), Gaps = 21/917 (2%) Strand=Plus/Minus Query 7241 CACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAAC 7300 ||||||||||| |||||||| ||| | || || ||| | || ||| ||| | | Sbjct 5524903 CACAGTTCCTCGAAACGTGCGCGGCTCATCTTGGTGTAGTAGTCGTGGCCCTCGAACAGA 5524844 Query 7301 GAATCAATTTCAATGGTTG--TTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCAC 7358 | || || |||||||| | | |||| | || || | || ||||| || ||||| Sbjct 5524843 GCGTCTATCTCAATGGTCGCCTCCGTGC--TGGAGGAGAGGGTGCGCTTGGCCCGCTCGG 5524786 Query 7359 ACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTAC 7418 ||||||||| | || || || ||||| ||||| | | ||| ||||| ||||| Sbjct 5524785 CCGCCGTTCGGAGGCGTCGCAGAGCACGAGGGTTGGAGCGCAGATCCTTCTTGAATTTAC 5524726 Query 7419 GTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGT 7478 | || ||||| || | | |||| | |||| || || || || || |||| || Sbjct 5524725 GCTTGAACTCGTCTGCCAGGTGTGTGACCAGTCGGTTGTCAAAGTCCTCGCCGCCCAGGT 5524666 Query 7479 GTGTATCCCCCGCGGTCGCTTTGACTTCAAA----GATACCTCCTTCAATGTTTAACAAC 7534 | || || || || || || || ||||| ||| ||| | || ||| | | | Sbjct 5524665 GGGTGTCTCCGGCAGTGGCCCGCACCTCAAACAGGGATCCCT-CGTCGATGGTGAGGATG 5524607 Query 7535 GAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTG 7594 || || || || || || || |||||||| || ||||| ||||| || | | Sbjct 5524606 GACACGTCGAAGGTTCCGCCGCCCAGGTCGAAGATGAGCACGTTGCGCTCACCCTTCAGA 5524547 Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATAC-GAAGACA 7653 ||||| || || || || || | || |||||||| || ||||| | || | || ||| Sbjct 5524546 TTCTTGTCCAGCCCATAGGCCAGCGCGGCCGCCGTCGGCTCATTGACGATTCTGAGCACA 5524487 Query 7654 GTTCAGGCCAGCAATAGTTGCC-GCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGT 7712 || ||||| || || | ||| ||||| ||||| || || || || || ||||| |||| Sbjct 5524486 -TTGAGGCCTGCGAT-GCGGCCAGCATCCTTCGTGGCCTGGCGCTGTGAGTCGTTGAAGT 5524429 Query 7713 AGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATAT 7772 |||| || || || | ||| ||||| |||| ||| || ||||| | || || | | Sbjct 5524428 AGGCAGGCACTGTGATGACTGCGTCTGTGATGGTCTGGCCCAGATAAGCCTCGGCCGTCT 5524369 Query 7773 CTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCAC 7832 | ||||||||| || |||||||| ||||| || | | ||| | |||| ||| | Sbjct 5524368 CCTTCATTTTGACCAGCACCATCGAGCTGATCTCCTCCGGGGAAAAGCGCTTCGCTTCGC 5524309 Query 7833 CGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACC 7892 | || || ||||| ||||| | || || || | || || | ||||| ||| || Sbjct 5524308 CCTTGAACTCAACACCAATCTTTGGCTT-GCCTC--CATCGCTTACCACCTTGAACGGCC 5524252 Query 7893 AATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTG 7952 | | || || || || | || | || || | | || || || ||||| | Sbjct 5524251 AGTGCTTGATGTCCTCCGCAATCTTGGGATCGTCGTACCTGCGCCCAATCAGGCGCTTCG 5524192 Query 7953 CATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAA 8012 |||| || ||||| || || |||||||| || |||||||| || || || || || | Sbjct 5524191 CATCGAACACTGTATTCTTCGGGTTCATCGCCACCTGGTTCTTGGCGGCATCGCCAATCA 5524132 Query 8013 GACGTTCATTATTTTCCGTAAACGCGACGTACGATGGG-GTCGTTCGATTCCCTTGGTCG 8071 | || || || || || | || || | |||| ||||| || || || |||||| Sbjct 5524131 GGCGCTC---CGACTCTGTGAATCCCACATA-GCTGGGCGTCGTCCGGTTTCCCTGGTCG 5524076 Query 8072 TTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCT 8131 || || || || || || ||| || |||| || ||||| || ||||| || || Sbjct 5524075 TTGGCGATGATCTCCACCTTTCCGTGCTGGTAGACACCCACGCAGGAGTACGTGGTGCCC 5524016 Query 8132 AAATCAATACCGATTGC 8148 || || || || || || Sbjct 5524015 AAGTCGATGCCAATAGC 5523999 Score = 165 bits (182), Expect = 1e-35 Identities = 502/767 (65%), Gaps = 18/767 (2%) Strand=Plus/Plus Query 7226 CGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCA 7285 ||||||| |||||| ||| ||||| || || ||||| | ||| | |||||| ||| Sbjct 11251575 CGGAACAGGTCCATGTTCAGCTCCTCGAAGCGGGCACGCGAAATCTTCGAATAGAAGTCA 11251634 Query 7286 ACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTT--GTGCCGTCGAAGATAACGTTC 7343 | ||| |||| || | |||||| || | || | | |||| | || || | ||| | Sbjct 11251635 ATGCCCTCGTGCAAGGCATCAATCTCCAAGGAGGCCTCCGTGCTG--GAGGACAGCGTGC 11251692 Query 7344 GCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATAT 7403 |||| || ||||| || || || || | || |||||||| ||| || || || | Sbjct 11251693 GCTTGGCCCGCTCGCAGGCAGTGCGCAGGCGGCGAAGGGCCCGCACATTGCCCTTGATGT 11251752 Query 7404 CTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAAT 7463 | ||| | || || || ||||| || |||||| | || | ||||| | Sbjct 11251753 CGGCCTTGTACTTGCGCTTGAACTCCTCCATGAAGTGGTTGACCAGACGGTTGTCGAAGT 11251812 Query 7464 CTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGAT--ACCTC-CTT 7520 | || || |||| || || || || || || || ||||| ||||| | ||| | | | Sbjct 11251813 CCTCGCCGCCCAGATGGGTGTCGCCGGCCGTGGCCTTGACCTCAAACAGCGACCCCTCGT 11251872 Query 7521 CAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT-C 7579 | ||| | | | || || || || || || || |||| || || || || ||||| | Sbjct 11251873 CGATGGTCAGAATGGACACGTCGAAGGTGCCGCCGCCCAAATCGAATATCAGAACGTTGC 11251932 Query 7580 GTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTA 7639 || ||| | | ||||| || ||||||||||| | || || ||||| || || || Sbjct 11251933 GT-TCGCCCTTCAGATTCTTGTCCAGACCGTACGCCAAGGCAGCGGCCGTGGGCTCGTTG 11251991 Query 7640 ATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGC 7699 || || | || ||| || || ||||| | | ||||| || ||||| || || || Sbjct 11251992 ATTATTCTGAGCACGTTGAGACCGGCAATGGAGCCGGCATCCTTGGTCGCCTGCCGCTGG 11252051 Query 7700 GAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATAC 7759 ||||| ||||||||||| || || | ||| || ||| | || || ||| |||||| Sbjct 11252052 CTGTCGTTGAAGTAGGCCGGCACTGTGATGACGGCATCCTTCACCTTGCCACCCAGATAC 11252111 Query 7760 GATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAAC 7819 ||| ||||| || ||| ||||| || |||||||| ||||| || | ||||| Sbjct 11252112 AGTTCGGCGATCTCGCGCATCTTGGTCAGGACCATCGAGCTGATCTCCTCGGGGGCAAAG 11252171 Query 7820 TGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATA 7879 | || || || || || || | ||||| |||| || || | ||| | || Sbjct 11252172 CGCTTGCGCTCGCCCTTGAACTCGATCTCAATTTTGGGCTT----GC--CCCCGTCGTTA 11252225 Query 7880 ---ACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTT 7936 || || | | ||| | || | || || |||| || | ||| ||||| | Sbjct 11252226 ACGACTTTGAAGGGCCAGTGCTTGAGGTCCTCCTGGATCTTCTTGTCGTCGAACTTGCGG 11252285 Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGC 7983 || || || || || ||||| || || || || |||| ||||||||| Sbjct 11252286 CCAATCAGGCGTTTCGCATCGAAGACCGTATTCTTGGCGTTCATGGC 11252332 Score = 143 bits (158), Expect = 3e-29 Identities = 375/563 (67%), Gaps = 13/563 (2%) Strand=Plus/Plus Query 7241 CACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAAC 7300 ||||||||||| |||||||| ||| | || || ||| | || ||| ||| | | Sbjct 5520700 CACAGTTCCTCGAAACGTGCGCGGCTCATCTTGGTGTAGTAGTCGTGGCCCTCGAACAGA 5520759 Query 7301 GAATCAATTTCAATGGTTG--TTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCAC 7358 | || || |||||||| | | |||| | || || | || ||||| || ||||| Sbjct 5520760 GCGTCTATCTCAATGGTCGCCTCCGTGC--TGGAGGAGAGGGTGCGCTTGGCCCGCTCGG 5520817 Query 7359 ACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTAC 7418 ||||||||| | || || || ||||| ||||| | | ||| ||||| ||||| Sbjct 5520818 CCGCCGTTCGGAGGCGTCGCAGAGCACGAGGGTTGGAGCGCAGATCCTTCTTGAATTTAC 5520877 Query 7419 GTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGT 7478 | || ||||| || | | |||| | |||| || || || || || |||| || Sbjct 5520878 GCTTGAACTCGTCTGCCAGGTGTGTGACCAGTCGGTTGTCAAAGTCCTCGCCGCCCAGGT 5520937 Query 7479 GTGTATCCCCCGCGGTCGCTTTGACTTCAAA----GATACCTCCTTCAATGTTTAACAAC 7534 | || || || || || || || ||||| ||| ||| | || ||| | | | Sbjct 5520938 GGGTGTCTCCGGCAGTGGCCCGCACCTCAAACAGGGATCCCT-CGTCGATGGTGAGGATG 5520996 Query 7535 GAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTG 7594 || || || || || || || |||||||| || ||||| ||||| || | | Sbjct 5520997 GACACGTCGAAGGTTCCGCCGCCCAGGTCGAAGATGAGCACGTTGCGCTCACCCTTCAGA 5521056 Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATAC-GAAGACA 7653 ||||| || || || || || | || |||||||| || ||||| | || | || ||| Sbjct 5521057 TTCTTGTCCAGCCCATAGGCCAGCGCGGCCGCCGTCGGCTCATTGACGATTCTGAGCACA 5521116 Query 7654 GTTCAGGCCAGCAATAGTTGCC-GCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGT 7712 || ||||| || || | ||| ||||| ||||| || || || || || ||||| |||| Sbjct 5521117 -TTGAGGCCTGCGAT-GCGGCCAGCATCCTTCGTGGCCTGGCGCTGTGAGTCGTTGAAGT 5521174 Query 7713 AGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATAT 7772 |||| || || || | ||| ||||| |||| ||| || ||||| | || || | | Sbjct 5521175 AGGCAGGCACTGTGATGACTGCGTCTGTGATGGTCTGGCCCAGATAAGCCTCGGCCGTCT 5521234 Query 7773 CTTTCATTTTGGTAAGAACCATC 7795 | ||||||||| || |||||| Sbjct 5521235 CCTTCATTTTGACCAGCACCATC 5521257 Score = 134 bits (148), Expect = 2e-26 Identities = 359/543 (66%), Gaps = 8/543 (1%) Strand=Plus/Minus Query 7607 CCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACA-GTTCAGGCCAGC 7665 || || || | ||| || ||||| || || || || || || | ||| ||| ||||| || Sbjct 14415199 CCATATGCCAGAGCTGCTGCCGTCGGCTCGTTGATGATGCGCA-ACACGTTGAGGCCGGC 14415141 Query 7666 AATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGT 7725 || | | | |||||||| || || || || || || ||||||||||| || || || || Sbjct 14415140 GATGGCTCCGGCATCTTTGGTGGCCTGGCGCTGGGAGTCGTTAAAGTACGCTGGCACTGT 14415081 Query 7726 TACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGT 7785 | || ||||| ||| | || || |||| || || | || ||||| ||| Sbjct 14415080 GATAACTGCGTCGCGCACTGAGGTGCCCAGGTACGCCTCGGCCGTCTCCTTCATCTTGAC 14415021 Query 7786 AAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAAC 7845 || |||||||| || || || | ||||| | ||| || || || || ||||| Sbjct 14415020 GAGCACCATCGAGCTGATTTCCTCCGGGGCAAAGCGCTTCACCTCGCCCTTGAACTCAAC 14414961 Query 7846 TTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATC 7905 ||| | || || |||||| || || ||||| | | ||| | ||||| || Sbjct 14414960 ACTCATCTTTGGCTT-GCCGCAG--TCGTTGACCACCTTGAAGGGCCAGTGCTTCATGTC 14414904 Query 7906 GTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGT 7965 || |||| || ||| ||||| | || || || ||||| || || || || | Sbjct 14414903 ATCCTGGATCTTCGAGTCGTCGAACTTGCGCCCAATCAGGCGCTTGGCGTCGAACACACT 14414844 Query 7966 GTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATT 8025 ||| || || ||||| || |||||||| || ||||| ||||| || || || | Sbjct 14414843 GTTCTTCGGATTCATCGCCACCTGGTTCTTGGCGGCGTCTCCGATGAGGCGCTCCGAA-- 14414786 Query 8026 TTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTC 8085 || || || || || || || || || || || || || ||||| || || ||||| Sbjct 14414785 -TCGGTGAATGCCACATAACTGGGTGTTGTGCGGTTGCCCTGATCGTTGGCGATTATTTC 14414727 Query 8086 TACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGAT 8145 || ||| || |||| ||||||||||| ||||| || || || ||||| || || Sbjct 14414726 CACCTTTCCGTGCTGGAAGACACCGACGCACGAGTACGTGGTGCCCAAGTCAATGCCAAT 14414667 Query 8146 TGC 8148 || Sbjct 14414666 GGC 14414664 >seq3 Length=12541198 Score = 145 bits (160), Expect = 1e-29 Identities = 247/355 (70%), Gaps = 5/355 (1%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||| || || || ||||| || || || || ||| || || || || | || Sbjct 3932888 ATCGAAGTCCTCGCCTCCCAAATGAGTGTCACCGTTGGTGGCCACCACCTCGAACACGCC 3932829 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 || ||| | | || || ||||| || ||||| || || || || || | || || Sbjct 3932828 GTTATCGATGGTCAGCAGGGAGACATCGAAGGTACCGCCGCCAAGATCGAACACCAGCAC 3932769 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 |||| | ||| | || | |||||| |||||||| || || ||||| || || ||||| Sbjct 3932768 GTTCTTCTCGCCCTCCCT---CTTATCCAGACCGTAGGCAATGGCCGCAGCAGTCGGTTC 3932712 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCC-GCATCTTTCGTCGCTTGTC 7694 || ||||| || | | || || || ||||| | ||| ||||| || || ||||| | Sbjct 3932711 GTTGATAATGCGCATAACATTGAGACCGGCAAT-GACGCCAGCATCCTTGGTGGCTTGAC 3932653 Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754 | || | |||||| ||||||||||| || || || || |||| ||||| ||||| || | Sbjct 3932652 GCTGGGCATCGTTGAAGTAGGCCGGCACTGTGACCACGGCGTGGGTGACCTTCTTGCCCA 3932593 Query 7755 GATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 |||| | ||| ||| | || ||||| ||| || ||||| | || ||||| || Sbjct 3932592 GATAAGCTTCGGCGGTTTCCTTCATCTTGCCGAGGACCATGGCAGAGATCTCCTC 3932538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635094771423600