Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017
65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq10 109 7e-19
seq15 95.1 2e-14
>seq10
Length=19787792
Score = 109 bits (120), Expect = 7e-19
Identities = 122/163 (75%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232
|||||| ||||| | | || |||||| || || || |||||||| ||| |||
Sbjct 12208195 CTTTGCCGAGCGTATTATTGCCTTTGCGGCCGTGGAAGGAATCTTCTTTAGTGGCAGCTT 12208136
Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292
| | || | |||||| |||||||| ||||||||||| ||||| ||||||||||||
Sbjct 12208135 TGCCTCGATCTTTTGGCTGAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGA 12208076
Query 102293 GCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTG 102335
||| ||||| |||||||| || || ||| || |||||||||
Sbjct 12208075 GCTGATCTCCCGTGACGAAGGTCTTCACTGCGACTTTGCGGTG 12208033
>seq15
Length=6594820
Score = 95.1 bits (104), Expect = 2e-14
Identities = 178/262 (68%), Gaps = 0/262 (0%)
Strand=Plus/Minus
Query 176021 TCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATTG 176080
||||| || ||| | || || ||||| |||||||| | |||||| || | || || |||
Sbjct 6045835 TCCTTGCCGCCCGTCAGCCGAGTACCGAACTGACCGCGCGGCTCCAGCAAGTTTATGTTG 6045776
Query 176081 TTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCACCG 176140
|| ||||| | ||||| | |||| || || || || | ||| ||||| || |||
Sbjct 6045775 TTCGAACCAACGTAGTTCTGGGCCAGATTCACGATAGTCATCTGGAGGGAGACCTCGCCG 6045716
Query 176141 TGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCATCC 176200
|||||||| || | |||| || || | | | || ||| ||||| || | ||| |
Sbjct 6045715 TGGTGGTAGGCCGACATCTCCGCCACGGAGCCAGACAGCTGGGCCACCTTTACCTCGCGC 6045656
Query 176201 TTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCATCC 176260
||| || | ||| || | | |||| |||||||| || ||||| || ||||||
Sbjct 6045655 TTGTCGTTGCGCTTGAAGCAAGTGAACATGACCTTGCGCTGGCCCGGCTTCAGGCCATCC 6045596
Query 176261 GCCATGTGTGCGATAGAACGCT 176282
||| | | ||| || ||||
Sbjct 6045595 ACCAGGCTGGGGATGGAGCGCT 6045574
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620705233048800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |