Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq9 100 3e-16 >seq9 Length=30819483 Score = 100 bits (110), Expect = 3e-16 Identities = 81/98 (83%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 153894 GCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAACCAGT 153953 || ||| | || ||||| ||||| ||||| ||||| ||| || | ||||| || ||||| Sbjct 7419481 GCCTACCGCTTGGCACTGCAGACGAGAGAACAGCACATCCGGCGGGACAAGGCCACCAGC 7419422 Query 153954 AACATCTGCACAGCTCAGGCACTGCTGGCTAATATGTC 153991 ||||| |||||||||||||| |||||||| |||||||| Sbjct 7419421 AACATTTGCACAGCTCAGGCGCTGCTGGCCAATATGTC 7419384 Score = 96.9 bits (106), Expect = 4e-15 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 153894 GCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAACCAGT 153953 || ||| | || ||||| ||||| || || ||||| ||| || | ||||| || ||||| Sbjct 7408638 GCCTACCGCTTGGCACTGCAGACGAGGGAACAGCACATCCGGCGGGACAAGGCCACCAGC 7408579 Query 153954 AACATCTGCACAGCTCAGGCACTGCTGGCTAATATGTC 153991 ||||| |||||||||||||| |||||||| |||||||| Sbjct 7408578 AACATTTGCACAGCTCAGGCGCTGCTGGCCAATATGTC 7408541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579178119633600