Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1665 118 9e-21 >seq1665 Length=7720 Score = 118 bits (130), Expect = 9e-21 Identities = 125/162 (77%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 930666 GATTTTTCTTCACCAAATATTGCCAAAGAAATGCATATTGGACATTTGCGTTCTACCATT 930725 |||||||||||||| ||||| ||||| | |||||| |||| || || || ||||| ||| Sbjct 6627 GATTTTTCTTCACCTAATATAGCCAAGCAGATGCATGTTGGTCACTTACGCTCTACAATT 6686 Query 930726 ATTGGAGAATCTTTATGTAGATTATATGAATATTGTGGAA-GTAAAGTTCATCGAGTCAA 930784 ||||| ||||| | || | ||| |||| || || || | || ||| | || Sbjct 6687 ATTGGCGAATCAGTTTGCCGCTTACTGGAAT-TTTTGCAACACGACGTAATTCGTATAAA 6745 Query 930785 TCATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGC 930826 |||| |||||||||||||||||||||| |||||||||||||| Sbjct 6746 TCATCTTGGTGATTGGGGAACACAATTCGGTATGTTAATTGC 6787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029042683197100