Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq4631 163 2e-35 seq3 109 4e-19 seq10 95.1 1e-14 >seq4631 Length=7852 Score = 163 bits (180), Expect = 2e-35 Identities = 164/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 |||||||| | |||||| || || || || || ||||| | | |||| | |||| ||| Sbjct 697 ACTAAATGCAAGGTAGACTCCTTCTGAATGTTATAATCAGACAGTGTTCGGCCATCTTCC 638 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 |||||||| || || || ||||||||||||||||| || ||||| |||||||| || || Sbjct 637 AATTGCTTGCCAGCGAAGATCAAACGCTGTTGATCTGGAGGAATTCCTTCTTTGTCCTGG 578 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || ||| ||| |||| | || || |||| ||| || |||||||| | || ||| Sbjct 577 ATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTTATGGTCTTG 518 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATGGTT 101473 || |||| || |||||||| |||||||||||| Sbjct 517 CCCGTTAGGGTCTTTACAAAGATCTGCATGGTT 485 >seq3 Length=12541198 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || ||||| | ||| || || || || || |||||||||| | ||| | | || ||| Sbjct 3174549 ACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGACAAAGTACGTCCGTCCTCC 3174490 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || ||||||||||| ||||| || |||||||| || || || || Sbjct 3174489 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 3174430 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || ||| | || | ||||| || | || || || || |||| || ||| Sbjct 3174429 ATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGTCTTG 3174370 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || | ||| || ||||| ||||||||| Sbjct 3174369 CCAGTCAGAGTCTTGACAAAGATCTGCATG 3174340 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || ||||| | ||| || || || || || |||||||||| | ||| | | || ||| Sbjct 3174777 ACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGACAAAGTACGTCCGTCCTCC 3174718 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || ||||||||||| ||||| || |||||||| || || || || Sbjct 3174717 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 3174658 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || ||| | || | ||||| || | || || || || |||| || ||| Sbjct 3174657 ATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGTCTTG 3174598 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || | ||| || ||||| ||||||||| Sbjct 3174597 CCAGTCAGAGTCTTGACAAAGATCTGCATG 3174568 Score = 105 bits (116), Expect = 5e-18 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || ||||| | ||| || || || || || |||||||||| | ||| | | || ||| Sbjct 3175461 ACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGACAAAGTACGTCCGTCCTCC 3175402 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || ||||||||||| ||||| || |||||||| || || || || Sbjct 3175401 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 3175342 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || ||| | || | ||||| || | || || || || |||| || ||| Sbjct 3175341 ATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGTCTTG 3175282 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAAG 101481 || || | ||| || || || ||||||||| | |||| || Sbjct 3175281 CCAGTCAGAGTCTTCACGAAGATCTGCATGCCTCCGCGCAG 3175241 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || ||||| | ||| || || || || || ||||| |||| | ||| | | || ||| Sbjct 3174321 ACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCCTCC 3174262 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || ||||||||||| ||||| || |||||||| || || || || Sbjct 3174261 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 3174202 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || ||| | || | ||||| || | || || || || |||| || ||| Sbjct 3174201 ATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATAGTCTTG 3174142 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || | ||| || ||||| ||||||||| Sbjct 3174141 CCAGTCAGAGTCTTGACAAAGATCTGCATG 3174112 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || ||||| | ||| || || || || || ||||| |||| | ||| | | || ||| Sbjct 3175005 ACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCCTCC 3174946 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || ||||||||||| ||||| || |||||||| || || || || Sbjct 3174945 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 3174886 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || ||| | || | ||||| || | || || || || |||| || ||| Sbjct 3174885 ATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGTCTTG 3174826 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || | ||| || ||||| ||||||||| Sbjct 3174825 CCAGTCAGAGTCTTGACAAAGATCTGCATG 3174796 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || ||||| || || || || || ||||| |||| | ||| | | || ||| Sbjct 3175233 ACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCCTCC 3175174 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || ||||||||||| ||||| || |||||||| || || || || Sbjct 3175173 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 3175114 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || ||| | || | ||||| || | || || || || |||| || ||| Sbjct 3175113 ATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGTCTTG 3175054 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || | ||| || ||||| ||||||||| Sbjct 3175053 CCAGTCAGAGTCTTGACAAAGATCTGCATG 3175024 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || ||||| | ||| || || || || || ||||| |||| | ||| | | || ||| Sbjct 3175689 ACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCCTCC 3175630 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || ||||||||||| ||||| || |||||||| || || || || Sbjct 3175629 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 3175570 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || ||| | || | ||||| || | || || || || |||| || ||| Sbjct 3175569 ATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGTCTTG 3175510 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || | ||| || ||||| ||||||||| Sbjct 3175509 CCAGTCAGAGTCTTGACAAAGATCTGCATG 3175480 Score = 104 bits (114), Expect = 2e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || || || | || || || || || || |||||||||| | ||| | | Sbjct 3175924 ACGCAATACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAATCGGACAAAGTACGTCC 3175865 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || |||| ||||| || || || ||||||||||| ||||| || |||||||| || || Sbjct 3175864 GTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTT 3175805 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 || || || || || ||| | || | ||||| || | || || || || |||| Sbjct 3175804 GTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGAT 3175745 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || ||||| || | ||| || ||||| ||||||||| Sbjct 3175744 GGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCATG 3175708 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || ||||| | ||| || || || || || |||||||||| | || | | || ||| Sbjct 3174093 ACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGACAAGGTACGTCCGTCCTCC 3174034 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || ||||||||||| ||||| || |||||||| || || || || Sbjct 3174033 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 3173974 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || ||| | || | ||||| || | || || || || |||| || ||| Sbjct 3173973 ATCTTGGCCTTGACATTCTCGATGGTGTCCGAGGGCTCAACCTCGAGGGTGATGGTCTTG 3173914 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | || || || || |||||||| Sbjct 3173913 CCAGTCAGGGTCTTCACGAAGATCTGCAT 3173885 >seq10 Length=19787792 Score = 95.1 bits (104), Expect = 1e-14 Identities = 192/283 (68%), Gaps = 4/283 (1%) Strand=Plus/Plus Query 13654 GAATTTTCGTTTACAACCTTCAAAATTCATGTGTCGTATTTTACCATAGATTGGTCGCTC 13713 ||| || || || || |||| | | ||||||| || || || || | || | ||||| Sbjct 8707520 GAACTTGCGCTTGCATCCTTGATAGTTCATGTAGCGAATCTTTCCGAATATCGCACGCTC 8707579 Query 13714 CATCCAGGCACGATCGTGAGTTCCGCATATTGACCACATGCAACCGGCATAACCGTTGGG 13773 | ||||| | |||||| | || | || ||||||||||| || |||| || ||||| Sbjct 8707580 CTTCCAGCCCATATCGTGTATGCCCCCAATAGACCACATGCAGCCCACATAGCCATTGGG 8707639 Query 13774 ATCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGGCGTTGATTAAAGCCACTG- 13832 |||||| || || | ||||| |||||||| | || |||| | | ||| ||| Sbjct 8707640 ATCGCGCCCGTCTAGGCTGTACTTGTCGTTCAGCAGGATCGCGT--ACTCCAGCGCCTGC 8707697 Query 13833 -TAGGCGAAATAGACCATTCTAATAtttttttAGCCCAATATATTCTCATATATCCGTGC 13891 |||| | ||| || | |||||| || ||||| || || | || | |||||||| Sbjct 8707698 TCCGGCGTGGCCGTCCACTCGAGTATTTTCTTGGCCCAGTACATGCGCAGAAATCCGTGC 8707757 Query 13892 ATTTTGCCTTGCGTTTTAAGCTGTGTCTGAGCAGCGTTCCACA 13934 || ||||| | | ||||| ||| |||| |||||||| Sbjct 8707758 ATCTTGCCCTCCCGCACCAGCTGCAGCTGGGCAGAGTTCCACA 8707800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396255266010030