Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq3 111 1e-19 seq6 109 4e-19 seq12 96.9 3e-15 seq4631 87.8 1e-12 >seq3 Length=12541198 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 ||||||| | || ||||| ||||| || | ||| ||| || || || |||||||| | Sbjct 3175937 CGCCGCCACGAAGACGCAATACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAATCGG 3175878 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 | | | | || |||| |||| |||||| ||||| || |||| ||||| ||||| | || Sbjct 3175877 ACAAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGG 3175818 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 ||| |||||||||||| ||||| || ||| | | | || || | ||| | Sbjct 3175817 GAATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGA 3175758 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| | || || || || || |||| ||| || ||||| |||||||| Sbjct 3175757 CCTCGAGGGTGATGGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 3175709 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| | ||| ||| || || || |||||||| || | | | || Sbjct 3174558 AGGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGACAAAGTACGT 3174499 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| |||||| ||||| || |||| ||||| ||||| | ||||| ||||||| Sbjct 3174498 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCC 3174439 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || | ||| ||||| | || Sbjct 3174438 TTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTG 3174379 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||| ||| || ||||| |||||||| Sbjct 3174378 ATGGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 3174341 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| | ||| ||| || || || |||||||| || | | | || Sbjct 3174786 AGGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGACAAAGTACGT 3174727 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| |||||| ||||| || |||| ||||| ||||| | ||||| ||||||| Sbjct 3174726 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCC 3174667 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || | ||| ||||| | || Sbjct 3174666 TTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTG 3174607 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||| ||| || ||||| |||||||| Sbjct 3174606 ATGGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 3174569 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| | ||| ||| || || || ||||| || || | | | || Sbjct 3174330 AGGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGT 3174271 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| |||||| ||||| || |||| ||||| ||||| | ||||| ||||||| Sbjct 3174270 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCC 3174211 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || | ||| ||||| | || Sbjct 3174210 TTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTG 3174151 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||| ||| || ||||| |||||||| Sbjct 3174150 ATAGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 3174113 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| | ||| ||| || || || ||||| || || | | | || Sbjct 3175014 AGGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGT 3174955 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| |||||| ||||| || |||| ||||| ||||| | ||||| ||||||| Sbjct 3174954 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCC 3174895 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || | ||| ||||| | || Sbjct 3174894 TTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTG 3174835 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||| ||| || ||||| |||||||| Sbjct 3174834 ATGGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 3174797 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| | ||| ||| || || || |||||||| || | | | || Sbjct 3175470 AGGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGACAAAGTACGT 3175411 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| |||||| ||||| || |||| ||||| ||||| | ||||| ||||||| Sbjct 3175410 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCC 3175351 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || | ||| ||||| | || Sbjct 3175350 TTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTG 3175291 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||| ||| || || || |||||||| Sbjct 3175290 ATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 3175253 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| | ||| ||| || || || ||||| || || | | | || Sbjct 3175698 AGGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGT 3175639 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| |||||| ||||| || |||| ||||| ||||| | ||||| ||||||| Sbjct 3175638 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCC 3175579 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || | ||| ||||| | || Sbjct 3175578 TTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTG 3175519 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||| ||| || ||||| |||||||| Sbjct 3175518 ATGGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 3175481 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || || ||| || || || ||||| || || | | | || Sbjct 3175242 AGGCGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGT 3175183 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| |||||| ||||| || |||| ||||| ||||| | ||||| ||||||| Sbjct 3175182 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCC 3175123 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || | ||| ||||| | || Sbjct 3175122 TTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTG 3175063 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||| ||| || ||||| |||||||| Sbjct 3175062 ATGGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 3175025 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| | ||| ||| || || || |||||||| || | | || Sbjct 3174102 AGGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGACAAGGTACGT 3174043 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| |||||| ||||| || |||| ||||| ||||| | ||||| ||||||| Sbjct 3174042 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCC 3173983 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || | ||| ||||| | || Sbjct 3173982 TTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCCGAGGGCTCAACCTCGAGGGTG 3173923 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||| || || || || |||||||| Sbjct 3173922 ATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 3173885 >seq6 Length=9197557 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||||||| || || ||| || || || ||||| ||||| ||| | || Sbjct 543916 AGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGG 543975 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| ||||| || || || ||||| || || | || | |||||| Sbjct 543976 CCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGAGGGATTCCCTCC 544035 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| ||||| | | | || || | ||||||||||| || Sbjct 544036 TTGTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGTG 544095 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| ||||| ||||| ||||| || ||||| Sbjct 544096 ATGGTTTTTCCGGTCAAGGTTTTCACAAAGATTTGCAT 544133 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||||||| || || ||| || || || ||||| || || ||| | || Sbjct 542548 AGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGG 542607 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| ||||| || || || ||||| || || | ||| | |||||| Sbjct 542608 CCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGATTCCCTCC 542667 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | || || | ||||||||||| || Sbjct 542668 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGTG 542727 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| ||||| ||||| ||||| || ||||| Sbjct 542728 ATGGTTTTTCCGGTCAAGGTTTTCACAAAGATTTGCAT 542765 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| || || ||| || || || ||||| || || ||| | || Sbjct 542776 AGACGAAGCACCAAATGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGG 542835 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| ||||| || || || ||||| || || | ||| | |||||| Sbjct 542836 CCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCC 542895 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | || || | ||||||||||| || Sbjct 542896 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGTG 542955 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| ||||| ||||| |||||||| ||||| Sbjct 542956 ATGGTTTTTCCGGTCAAGGTTTTCACAAAAATTTGCAT 542993 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| || || ||| || || || ||||| || || ||| | || Sbjct 543232 AGACGAAGCACCAAATGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGG 543291 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| ||||| || || || ||||| || || | ||| | |||||| Sbjct 543292 CCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGATTCCCTCC 543351 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | || || | ||||||||||| || Sbjct 543352 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGTG 543411 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| ||||| ||||| |||||||| ||||| Sbjct 543412 ATGGTTTTTCCGGTCAAGGTTTTCACAAAAATTTGCAT 543449 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||||||| || || ||| || || || ||||| || || ||| | || Sbjct 543688 AGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGG 543747 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| ||||| || || || ||||| || || | ||| | |||||| Sbjct 543748 CCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGATTCCCTCC 543807 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | || || | ||||||||||| || Sbjct 543808 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGTG 543867 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| ||||| ||||| ||||| || ||||| Sbjct 543868 ATGGTTTTTCCGGTCAAGGTTTTCACAAAGATTTGCAT 543905 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||||||| || || ||| || || || ||||| || || ||| | || Sbjct 544144 AGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGG 544203 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| ||||| ||||| || || || ||||| || || | ||| | |||||| Sbjct 544204 CCATCCTCCAGTTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCC 544263 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | || || | ||||||||||| || Sbjct 544264 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGTG 544323 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| ||||| ||||| ||||| |||||||| Sbjct 544324 ATGGTTTTTCCAGTCAAGGTTTTCACAAAGATCTGCAT 544361 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | || |||| ||||||||| || || ||| || || || ||||| || || Sbjct 542311 CCGCCACGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAA 542370 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | || | || |||| |||||| || || || || || ||||| || || | ||| Sbjct 542371 AGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGG 542430 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| |||||| ||| || | | | || || | || ||| Sbjct 542431 ATTCCCTCCTTGTCCTGAATCTTGGCTTTCACGTTCTCAATGGTGTCAGAAGGTTCGACC 542490 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||||| |||||||| |||| ||| || || ||||| ||||| Sbjct 542491 TCCAGGGTAATAGTTTTTCCAGTCAGAGTCTTCACGAAAATTTGCAT 542537 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| || || ||| || || || ||||| || || ||| | || Sbjct 543004 AGACGAAGCACCAAATGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGG 543063 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| ||||| || || || ||||| || || | ||| | |||||| Sbjct 543064 CCATCCTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCC 543123 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | || || | ||||||||||| || Sbjct 543124 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGTG 543183 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| ||||| ||||| ||||| || ||||| Sbjct 543184 ATGGTTTTTCCGGTCAAGGTTTTCACAAAGATTTGCAT 543221 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||||||| || || ||| || || || ||||| || || ||| | || Sbjct 543460 AGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGG 543519 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| ||||| || || || ||||| || || | ||| | |||||| Sbjct 543520 CCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGATTCCCTCC 543579 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | || || | ||||||||||| || Sbjct 543580 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGTG 543639 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| |||| ||| || || || |||||||| Sbjct 543640 ATGGTTTTTCCAGTCAGAGTCTTCACGAAGATCTGCAT 543677 >seq12 Length=1235759 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || || ||| || || || ||||| || || ||| | || Sbjct 219385 AGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGG 219326 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| ||||| || ||||| ||||| ||||| | ||||| ||||||| Sbjct 219325 CCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCC 219266 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || | ||| ||||||| || Sbjct 219265 TTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTG 219206 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | |||||| || || || ||||| Sbjct 219205 ATGGTCTTGCCAGTGAGAGTTTTCACGAAGATTTGCAT 219168 >seq4631 Length=7852 Score = 87.8 bits (96), Expect = 1e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 ||||| | || ||||| | || ||| || ||||| || |||||||| || |||| Sbjct 706 AGCCGAAGTACTAAATGCAAGGTAGACTCCTTCTGAATGTTATAATCAGACAGTGTTCGG 647 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||| ||||| || || || |||| ||||||||||| | |||| || || Sbjct 646 CCATCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGATCTGGAGGAATTCCTTCT 587 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| ||| ||| | | | || |||| || ||||| | || Sbjct 586 TTGTCCTGGATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTT 527 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGT 48769 || || || ||||| | || |||||||| |||||||| || Sbjct 526 ATGGTCTTGCCCGTTAGGGTCTTTACAAAGATCTGCATGGT 486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380915361577170