Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017
65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq10 239 8e-58
>seq10
Length=19787792
Score = 239 bits (264), Expect = 8e-58
Identities = 561/830 (68%), Gaps = 25/830 (3%)
Strand=Plus/Plus
Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898
|||||| || |||| | |||||||||||||||||||| || |||| |||||| ||||
Sbjct 12207745 CTGGTACTCGGCCACCTTCTTCTCAAAGAAGTTTGTCTTTCCGTCCAGCGAGATCATCTC 12207804
Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958
|||||| ||| || || ||||| || | | || || | || | |||||
Sbjct 12207805 CATGAAATTGAAAGGATTCTTAGTGTTGTAGATCTTACCCACACCGAGCTCCCCTAGCAG 12207864
Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018
|||| || ||| |||||||||| | |||||||| ||||||||| || |
Sbjct 12207865 CCGATCGGCCACGAACTCGATGTACTGGGACATGAGAACACAGTTCATGCCAATCAAATT 12207924
Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078
||||||| || | ||||| ||||||| ||| || | ||| || |||| | ||||
Sbjct 12207925 GACGGGCAGGGCTTCAGTGAGGAACTCCTGCTCGATTTCCACAGCATCCCTGATGATCTC 12207984
Query 48079 CTTAACGCGGGACTCTGAGGGTTTGTTGCGC-AGGTGCTTGG-CATAGAGCATGCAGGCA 48136
| | ||| | ||| | ||| | || || | ||| ||||| |||
Sbjct 12207985 GATGATGCGCTCCCGCTTGGGCC-GCTGCACTAGATGGTGATACAT-GAGCACC---GCA 12208039
Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196
||||| | ||| | |||||||| ||| ||| ||| ||||||||||| ||||| |||
Sbjct 12208040 AAGTCGCAGTGAAGACCTTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGC 12208099
Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256
|||| || | || || ||||| || || | || || |||| |||||||| ||
Sbjct 12208100 ATGAGACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAAAGAAGATTCCT 12208159
Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAG--CGTTCTTGTCTGAGATCC 48314
||||| ||||| || || | | | ||| | |||| | || | | | || ||||
Sbjct 12208160 TCCACGGCCGCAAAGGCAATAATACGCTCGGC-AAAGTTGGCCGATTTCGAG-GATATCC 12208217
Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA 48374
|||| | |||||||| ||||| ||| | ||||| ||||| || || ||| |
Sbjct 12208218 AGGACATGGCCCAGTCCGCCTTGCGCTTTACAGCCGGCATGGTCTCAATAGCATTGAACA 12208277
Query 48375 GCTTCTTGCACTCACCTGCG--TCCGCAACATAGGT---AGTGAGCA-GCTTTGCGTACA 48428
| | || ||| ||||| ||| | ||||| | |||||| ||| |||||
Sbjct 12208278 AGTAGTCGCGCTC--CTGCGGCTCCCGTATGTAGGTGTCAATGAGCACGCT----GTACA 12208331
Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488
|||| |||||||||||||| || || |||||||| ||||||||| | ||||| |
Sbjct 12208332 TCTCGGAGTGCACATTCTCCATGGCTATCTGGAAGCCGTAGAAGCAACGTGCCTCTGTGA 12208391
Query 48489 CCTGCACTTC-TGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCA 48547
|||||| || || | || | ||| | ||||||||| || || || || || || |||
Sbjct 12208392 TCTGCACCTCCTGACTA-AAGCGCTCGACCAGATTCTCGTTAACAATGCCGTCCGAGGCA 12208450
Query 48548 GCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAG 48607
|| |||||||| || ||||| | || | ||||||||||| |||||| ||||
Sbjct 12208451 GCGAAGAAGGCCAGCACATGGGAGATAAAGTAGCGCTCGTTGTCAGTGAGACGGGCCCAG 12208510
Query 48608 CCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657
|| |||| || || ||||| |||||||||||||||||||| ||
Sbjct 12208511 TCCGTCGCGTCCTTTGATAGATCCACCTCTTCCACAGTCCAGAAGGAGGC 12208560
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931477024473600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |