Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq10 239 8e-58 >seq10 Length=19787792 Score = 239 bits (264), Expect = 8e-58 Identities = 561/830 (68%), Gaps = 25/830 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || |||| | |||||||||||||||||||| || |||| |||||| |||| Sbjct 12207745 CTGGTACTCGGCCACCTTCTTCTCAAAGAAGTTTGTCTTTCCGTCCAGCGAGATCATCTC 12207804 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 |||||| ||| || || ||||| || | | || || | || | ||||| Sbjct 12207805 CATGAAATTGAAAGGATTCTTAGTGTTGTAGATCTTACCCACACCGAGCTCCCCTAGCAG 12207864 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 |||| || ||| |||||||||| | |||||||| ||||||||| || | Sbjct 12207865 CCGATCGGCCACGAACTCGATGTACTGGGACATGAGAACACAGTTCATGCCAATCAAATT 12207924 Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 ||||||| || | ||||| ||||||| ||| || | ||| || |||| | |||| Sbjct 12207925 GACGGGCAGGGCTTCAGTGAGGAACTCCTGCTCGATTTCCACAGCATCCCTGATGATCTC 12207984 Query 48079 CTTAACGCGGGACTCTGAGGGTTTGTTGCGC-AGGTGCTTGG-CATAGAGCATGCAGGCA 48136 | | ||| | ||| | ||| | || || | ||| ||||| ||| Sbjct 12207985 GATGATGCGCTCCCGCTTGGGCC-GCTGCACTAGATGGTGATACAT-GAGCACC---GCA 12208039 Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196 ||||| | ||| | |||||||| ||| ||| ||| ||||||||||| ||||| ||| Sbjct 12208040 AAGTCGCAGTGAAGACCTTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGC 12208099 Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256 |||| || | || || ||||| || || | || || |||| |||||||| || Sbjct 12208100 ATGAGACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAAAGAAGATTCCT 12208159 Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAG--CGTTCTTGTCTGAGATCC 48314 ||||| ||||| || || | | | ||| | |||| | || | | | || |||| Sbjct 12208160 TCCACGGCCGCAAAGGCAATAATACGCTCGGC-AAAGTTGGCCGATTTCGAG-GATATCC 12208217 Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA 48374 |||| | |||||||| ||||| ||| | ||||| ||||| || || ||| | Sbjct 12208218 AGGACATGGCCCAGTCCGCCTTGCGCTTTACAGCCGGCATGGTCTCAATAGCATTGAACA 12208277 Query 48375 GCTTCTTGCACTCACCTGCG--TCCGCAACATAGGT---AGTGAGCA-GCTTTGCGTACA 48428 | | || ||| ||||| ||| | ||||| | |||||| ||| ||||| Sbjct 12208278 AGTAGTCGCGCTC--CTGCGGCTCCCGTATGTAGGTGTCAATGAGCACGCT----GTACA 12208331 Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 |||| |||||||||||||| || || |||||||| ||||||||| | ||||| | Sbjct 12208332 TCTCGGAGTGCACATTCTCCATGGCTATCTGGAAGCCGTAGAAGCAACGTGCCTCTGTGA 12208391 Query 48489 CCTGCACTTC-TGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCA 48547 |||||| || || | || | ||| | ||||||||| || || || || || || ||| Sbjct 12208392 TCTGCACCTCCTGACTA-AAGCGCTCGACCAGATTCTCGTTAACAATGCCGTCCGAGGCA 12208450 Query 48548 GCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAG 48607 || |||||||| || ||||| | || | ||||||||||| |||||| |||| Sbjct 12208451 GCGAAGAAGGCCAGCACATGGGAGATAAAGTAGCGCTCGTTGTCAGTGAGACGGGCCCAG 12208510 Query 48608 CCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657 || |||| || || ||||| |||||||||||||||||||| || Sbjct 12208511 TCCGTCGCGTCCTTTGATAGATCCACCTCTTCCACAGTCCAGAAGGAGGC 12208560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931477024473600