Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq10 154 3e-32 >seq10 Length=19787792 Score = 154 bits (170), Expect = 3e-32 Identities = 523/814 (64%), Gaps = 11/814 (1%) Strand=Plus/Minus Query 25512 CTGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGG-CTGGTACGCTCTATCCA 25570 |||||| | |||||| | ||||| | |||||| | |||| |||| | ||| | Sbjct 12208552 CTGGACTGTGGAAGAGGTGGATCTATCAAAGGACGCG-ACGGACTGGGCCCGTCTCACTG 12208494 Query 25571 AAGACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAG 25630 | |||||| | ||| || | ||| |||| ||||| || ||||| || || || | Sbjct 12208493 ACAACGAGCGCTACTTTATCTCCCATGTGCTGGCCTTCTTCGCTGCCTCGGACGGCATTG 12208434 Query 25631 TGAACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTT 25690 | |||||||||||| |||| | || | ||| |||||| | ||||| || | Sbjct 12208433 TTAACGAGAATCTGGTCGAGCGCTTTAGTCAGGAGGTGCAGATCACAGAGGCACGTTGCT 12208374 Query 25691 TCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGA 25750 ||||||| |||||||| ||||| || ||||||||||| ||| |||| | ||| | Sbjct 12208373 TCTACGGCTTCCAGATAGCCATGGAGAATGTGCACTCCGAGATGTACAGCGTGCTCATTG 12208314 Query 25751 TGACGTACATTACAGACGTCGC-CGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATA 25809 || |||| ||| | | ||| ||| | || |||| ||| || ||| ||| Sbjct 12208313 ACACCTACA-TACGGGAGCCGCAGGAGCGCGACTACTTGTTCAATGCTATTGAGACCATG 12208255 Query 25810 CCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGC-GCTAC 25868 || | ||| | |||||| ||||||||| ||||| | | | | | | || | Sbjct 12208254 CCGGCTGTAAAGCGCAAGGCGGACTGGGCCATGTCCTGGAT-ATCCTCGAAATCGGCCAA 12208196 Query 25869 GTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT 25928 |||| |||||| | | |||||||| || ||||| || ||||| || || || || Sbjct 12208195 CTTTGCCGAGCGTATTATTGCCTTTGCGGCCGTGGAAGGAATCTTCTTTAGTGGCAGCTT 12208136 Query 25929 TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGA 25988 ||| | ||||| ||||| ||| || || ||||||||| ||| ||| |||||||| Sbjct 12208135 TGCCTCGATCTTTTGGCTGAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGA 12208076 Query 25989 GCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTA-CACGGGCC 26047 ||| ||| | | ||||| ||||| ||| | || ||||| || | || || || Sbjct 12208075 GCTGATCTCCCGTGACGAAGGTCTTCACTGCGACTTTGCGGTGCTCATGTATCA----CC 12208020 Query 26048 ACTTGCTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGA 26107 | | | || || | ||| | || | ||||||| || |||||||| | Sbjct 12208019 ATCTAGTGCAGCGGCCCAAGCGGGAGCGCATCATCGAGATCATCAGGGATGCTGTGGAAA 12207960 Query 26108 TCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGAC 26167 ||||| ||||||| | | ||||||||| | Sbjct 12207959 TCGAGCAGGAGTTCCTCACTGAAGCCCTGCCCGTCAATTTGATTGGCATGAACTGTGTTC 12207900 Query 26168 TCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCA 26227 ||||| ||| ||||| |||| |||||||| | ||||| | |||| || | | | Sbjct 12207899 TCATGTCCCAGTACATCGAGTTCGTGGCCGATCGGCTGCTAGGGGAGCTCGGTGTGGGTA 12207840 Query 26228 GACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGA 26287 |||||| || || || ||| | || ||||| | || ||| |||| || |||| Sbjct 12207839 AGATCTACAACACTAAGAATCCTTTCAATTTCATGGAGATGATCTCGCTGGACGGAAAGA 12207780 Query 26288 CCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 | ||||||||||| |||| ||| | ||| || || Sbjct 12207779 CAAACTTCTTTGAGAAGAAGGTGGCCGAGTACCA 12207746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928789185417600