Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017
65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq10 154 3e-32
>seq10
Length=19787792
Score = 154 bits (170), Expect = 3e-32
Identities = 523/814 (64%), Gaps = 11/814 (1%)
Strand=Plus/Minus
Query 25512 CTGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGG-CTGGTACGCTCTATCCA 25570
|||||| | |||||| | ||||| | |||||| | |||| |||| | ||| |
Sbjct 12208552 CTGGACTGTGGAAGAGGTGGATCTATCAAAGGACGCG-ACGGACTGGGCCCGTCTCACTG 12208494
Query 25571 AAGACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAG 25630
| |||||| | ||| || | ||| |||| ||||| || ||||| || || || |
Sbjct 12208493 ACAACGAGCGCTACTTTATCTCCCATGTGCTGGCCTTCTTCGCTGCCTCGGACGGCATTG 12208434
Query 25631 TGAACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTT 25690
| |||||||||||| |||| | || | ||| |||||| | ||||| || |
Sbjct 12208433 TTAACGAGAATCTGGTCGAGCGCTTTAGTCAGGAGGTGCAGATCACAGAGGCACGTTGCT 12208374
Query 25691 TCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGA 25750
||||||| |||||||| ||||| || ||||||||||| ||| |||| | ||| |
Sbjct 12208373 TCTACGGCTTCCAGATAGCCATGGAGAATGTGCACTCCGAGATGTACAGCGTGCTCATTG 12208314
Query 25751 TGACGTACATTACAGACGTCGC-CGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATA 25809
|| |||| ||| | | ||| ||| | || |||| ||| || ||| |||
Sbjct 12208313 ACACCTACA-TACGGGAGCCGCAGGAGCGCGACTACTTGTTCAATGCTATTGAGACCATG 12208255
Query 25810 CCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGC-GCTAC 25868
|| | ||| | |||||| ||||||||| ||||| | | | | | | || |
Sbjct 12208254 CCGGCTGTAAAGCGCAAGGCGGACTGGGCCATGTCCTGGAT-ATCCTCGAAATCGGCCAA 12208196
Query 25869 GTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT 25928
|||| |||||| | | |||||||| || ||||| || ||||| || || || ||
Sbjct 12208195 CTTTGCCGAGCGTATTATTGCCTTTGCGGCCGTGGAAGGAATCTTCTTTAGTGGCAGCTT 12208136
Query 25929 TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGA 25988
||| | ||||| ||||| ||| || || ||||||||| ||| ||| ||||||||
Sbjct 12208135 TGCCTCGATCTTTTGGCTGAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGA 12208076
Query 25989 GCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTA-CACGGGCC 26047
||| ||| | | ||||| ||||| ||| | || ||||| || | || || ||
Sbjct 12208075 GCTGATCTCCCGTGACGAAGGTCTTCACTGCGACTTTGCGGTGCTCATGTATCA----CC 12208020
Query 26048 ACTTGCTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGA 26107
| | | || || | ||| | || | ||||||| || |||||||| |
Sbjct 12208019 ATCTAGTGCAGCGGCCCAAGCGGGAGCGCATCATCGAGATCATCAGGGATGCTGTGGAAA 12207960
Query 26108 TCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGAC 26167
||||| ||||||| | | ||||||||| |
Sbjct 12207959 TCGAGCAGGAGTTCCTCACTGAAGCCCTGCCCGTCAATTTGATTGGCATGAACTGTGTTC 12207900
Query 26168 TCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCA 26227
||||| ||| ||||| |||| |||||||| | ||||| | |||| || | | |
Sbjct 12207899 TCATGTCCCAGTACATCGAGTTCGTGGCCGATCGGCTGCTAGGGGAGCTCGGTGTGGGTA 12207840
Query 26228 GACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGA 26287
|||||| || || || ||| | || ||||| | || ||| |||| || ||||
Sbjct 12207839 AGATCTACAACACTAAGAATCCTTTCAATTTCATGGAGATGATCTCGCTGGACGGAAAGA 12207780
Query 26288 CCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321
| ||||||||||| |||| ||| | ||| || ||
Sbjct 12207779 CAAACTTCTTTGAGAAGAAGGTGGCCGAGTACCA 12207746
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928789185417600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |