Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq9 194 1e-43 seq1665 122 6e-22 seq4631 111 1e-18 seq6 107 1e-17 seq10 91.5 1e-12 >seq9 Length=30819483 Score = 194 bits (214), Expect = 1e-43 Identities = 377/548 (69%), Gaps = 8/548 (1%) Strand=Plus/Plus Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392 ||||||||||||| || || || ||| |||||| | ||| | || |||| || || | Sbjct 28007200 TTGGTATTGATTTGGGCACAACCTACTCTTGTGTGGGTGTGTTCCAGCATGGCAAGGTCG 28007259 Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452 | || |||||||| ||||| |||||| | || |||||||| |||||| | || || || | Sbjct 28007260 AGATCATTGCCAACGACCAGGGTAATCGTACGACACCATCCTATGTTGCCTTCACGGACA 28007319 Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTA 474512 | || | | | ||||| ||||| || || |||| | || || || | || | Sbjct 28007320 CGGAGCGTTTGATTGGTGATGCCGCCAAGAATCAGGTGGCGATGAACCCAACCCAAACGA 28007379 Query 474513 TTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATA 474572 | || ||||| || | |||||||||| || ||||| ||| | |||| || ||||| | Sbjct 28007380 TCTTCGATGCCAAGCGTCTGATTGGTCGCAAGTTTGAGGATTCTGCTGTGCAGTCTGACA 28007439 Query 474573 TGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGCAA--T 474630 || || ||||| || | ||| | | || | ||| || || | || || | | | Sbjct 28007440 TGAAGCACTGGCCCTTCGATGTGGTCAGCGTAGATGGCAAGCCCAAGATTGAGGTTACGT 28007499 Query 474631 ACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAA 474690 ||| | | | | || | || | ||| || || | || || || ||||| || |||| Sbjct 28007500 ACAAGGATGAG-AAGAAGACCTTCTTC-CCCGAGGAGATCTCCTCCATGGTGTTGACCAA 28007557 Query 474691 AATGAAACAAACCG-CGAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGTAATTACT 474748 |||||| | |||| |||| | || | ||| ||||| ||| || |||| || || ||| Sbjct 28007558 AATGAAGGAGACCGCCGAG-GCGTA-CCTGGGCAAGACAGTGACCAATGCCGTCATCACT 28007615 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 || ||||| || || || || || || ||||| || || || ||||| || | ||||| Sbjct 28007616 GTGCCAGCCTACTTCAACGACTCGCAGCGTCAGGCGACCAAGGATGCCGGTACCATTGCC 28007675 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868 || | ||||| | ||||| || || || || ||||| || || | || ||||| || Sbjct 28007676 GGATTGAATGTGCTGCGTATCATCAACGAGCCCACAGCCGCTGCTATCGCCTATGGCCTG 28007735 Query 474869 GATAAGAA 474876 || ||||| Sbjct 28007736 GACAAGAA 28007743 Score = 134 bits (148), Expect = 9e-26 Identities = 366/553 (66%), Gaps = 8/553 (1%) Strand=Plus/Minus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 ||| |||||||||||||| || || ||| || | ||||| | ||| | || ||||| || Sbjct 27748573 TGCTATTGGTATTGATTTGGGCACAACTCACTGCTGTGTGGGTGTGTTCCAGAATGGCAA 27748514 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 || || || |||||||| ||||| |||||| | || ||| |||| |||||| | || || Sbjct 27748513 GGTCGAGATCATTGCCAACGACCAGGGTAATCGTACCACATCATCCTATGTTGCCTTCAC 27748454 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507 || || || | | ||||| ||||| || || | || | | || || | Sbjct 27748453 GGATACGGAGCGCTTGATTGGTGATGCCGCCAAGAACCAGGTGACGGTGAACCCAAACCA 27748394 Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATC 474567 | || || || | || | |||||||||| || ||| | ||| | ||||||| | Sbjct 27748393 GAGGATCTTCGAATCGAAGCGTCTGATTGGTCGCAAGTTTAAGGATTCTGCTGTCCAGGC 27748334 Query 474568 TGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC 474627 ||| ||| | ||||| || | ||| | | ||| | || || || | || || | Sbjct 27748333 TGACATGAAGTACTGGCCCTTCGATGTGGTCAGTGTAGACGGCAAGCCCAAGATTGAGGT 27748274 Query 474628 AA--TACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTA 474685 | |||| | | | | || | || | ||| || || | || ||| | ||||| || Sbjct 27748273 TACGTACAAGGACGAG-AAGAAGACCTTCTTCGCC-GAGGAGATCTCTGCCATGGTGTTG 27748216 Query 474686 GCCAAAATGAAACAAACCG-CGAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGTAA 474743 |||||||||| | |||| |||| | | ||| ||||| || || | || || | Sbjct 27748215 ACCAAAATGAAGGAGACCGCCGAG--GAGTACCTGGGCAAGACGGTGACCAAAGCTGTCA 27748158 Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803 | |||| ||||| | || || || || || ||||| || || || ||||| || | | Sbjct 27748157 TCTCTGTGCCAGCCCACTTCAACGACTCGCAGCGTCAGGCTACCAAGGATGCCGGTACCA 27748098 Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863 | || ||| | || || | ||||| || || || || || || || ||| | || |||| Sbjct 27748097 TCGCCGGTTTGAAAGTCCTGCGTATCATCAACGAGCCCACGGCCGCTGCAATCGCCTATG 27748038 Query 474864 GTCTTGATAAGAA 474876 | || || ||||| Sbjct 27748037 GCCTGGACAAGAA 27748025 >seq1665 Length=7720 Score = 122 bits (134), Expect = 6e-22 Identities = 129/170 (76%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 817092 TTTTAATAGATTTTTCATCTCCAAATATTGCAAAGGAAATGCATATTGGACACTTGAGAT 817151 |||| | |||||||| || || ||||| || ||| | |||||| |||| ||||| | | Sbjct 6619 TTTTGGTGGATTTTTCTTCACCTAATATAGCCAAGCAGATGCATGTTGGTCACTTACGCT 6678 Query 817152 CTACAATAATTGGTGAATCTCTTTGTAGAATATATGAATTTTGTGGATGTGAAGTACAAA 817211 ||||||| ||||| ||||| |||| | || ||||||| | || ||| Sbjct 6679 CTACAATTATTGGCGAATCAGTTTGCCGCTTACTGGAATTTTTGCAACACGACGTAATTC 6738 Query 817212 GAATAAATCATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGCA 817261 | ||||||||| |||||||||||||||||||||| ||||||||||||||| Sbjct 6739 GTATAAATCATCTTGGTGATTGGGGAACACAATTCGGTATGTTAATTGCA 6788 >seq4631 Length=7852 Score = 111 bits (122), Expect = 1e-18 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||| || ||||| | ||| | ||| || || || |||||||||| || || Sbjct 710 ACGAAGCCGAAGTACTAAATGCAAGGTAGACTCCTTCTGAATGTTATAATCAGACAGTGT 651 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || | |||||| | |||||| ||||| || || | ||| |||||||| ||||||||||| Sbjct 650 TCGGCCATCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGATCTGGAGGAATTCC 591 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||| ||||| || ||||| ||||||| ||| || ||||| | || ||||| Sbjct 590 TTCTTTGTCCTGGATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAG 531 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || || || ||||| || || || || Sbjct 530 AGTTATGGTCTTGCCCGTTAGGGTCTTTACAAAGATCTG 492 >seq6 Length=9197557 Score = 107 bits (118), Expect = 1e-17 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 480606 AGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 480665 ||||| | | |||||| || ||||| ||||| || || ||||| || || || || || Sbjct 542371 AGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGG 542430 Query 480666 ATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTT 480725 ||||| |||||||| |||||||| ||| || ||||| || |||| || Sbjct 542431 ATTCCCTCCTTGTCCTGAATCTTGGCTTTCACGTTCTCAATGGTGTCAGAAGGTTCGACC 542490 Query 480726 TCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || |||||||||||||| || || |||||||| ||||||||||| Sbjct 542491 TCCAGGGTAATAGTTTTTCCAGTCAGAGTCTTCACGAAAATTTG 542534 >seq10 Length=19787792 Score = 91.5 bits (100), Expect = 1e-12 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805 ||||| || || || || ||||| || || ||||| || || || ||||| ||| ||| Sbjct 17397069 ACTGTGCCCGCCTACTTCAATGACTCGCAGCGTCAGGCCACCAAGGATGCCGGACAGATT 17397010 Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865 || |||||||||||||| ||| | || || || || |||||||| || || || || || Sbjct 17397009 GCCGGTCTTAATGTTTTGCGTGTAATCAACGAGCCCACAGCAGCGGCCCTGGCCTACGGC 17396950 Query 474866 CTTGATAAGA 474875 | ||||||| Sbjct 17396949 ATGGATAAGA 17396940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267973733658920