Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq10 87.8 2e-12 >seq10 Length=19787792 Score = 87.8 bits (96), Expect = 2e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129 ||| |||||||| || |||| |||||| ||||| || |||||||| || || Sbjct 12208195 CTTTGCCGAGCGTATTATTGCCTTTGCGGCCGTGGAAGGAATCTTCTTTAGTGGCAGCTT 12208136 Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 | | || | |||| |||||||||| ||||||||||| || || |||||| || || Sbjct 12208135 TGCCTCGATCTTTTGGCTGAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGA 12208076 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTG 65232 || || ||||| || || ||||| ||| || ||||| ||| Sbjct 12208075 GCTGATCTCCCGTGACGAAGGTCTTCACTGCGACTTTGCGGTG 12208033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596533880395200