Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq4631 136 7e-27 >seq4631 Length=7852 Score = 136 bits (150), Expect = 7e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 |||||||| | |||||| |||| ||| || ||| ||||| || || | |||| | Sbjct 703 CGAAGTACTAAATGCAAGGTAGACTCCTTCTGAATGTTATAATCAGACAGTGTTCGGCCA 644 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || ||||| || || || || || || | ||||||||| ||||| ||||||||||| Sbjct 643 TCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGATCTGGAGGAATTCCTTCTTTG 584 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || |||| ||| | |||| || ||||| || | || || || |||||||| Sbjct 583 TCCTGGATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTTATG 524 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || ||||| || |||||||| || ||||| Sbjct 523 GTCTTGCCCGTTAGGGTCTTTACAAAGATCTGCAT 489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899600533192800