Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017
65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq4631 152 1e-31
seq6 87.8 4e-12
>seq4631
Length=7852
Score = 152 bits (168), Expect = 1e-31
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369
||||| | ||| || | ||||||||| || |||| ||| || || |||||||||||
Sbjct 715 CCACCACGAAGCCGAAGTACTAAATGCAAGGTAGACTCCTTCTGAATGTTATAATCAGAC 656
Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429
| |||||| |||| |||||||| || ||||| ||||| || | ||||||||| || ||
Sbjct 655 AGTGTTCGGCCATCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGATCTGGAGGA 596
Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489
||||||||||| || || || || ||| ||||| || | ||| |||| ||| ||
Sbjct 595 ATTCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACC 536
Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| ||||| ||||| || || |||| || || | ||| ||||||||
Sbjct 535 TCAAGAGTTATGGTCTTGCCCGTTAGGGTCTTTACAAAGATCTGCAT 489
>seq6
Length=9197557
Score = 87.8 bits (96), Expect = 4e-12
Identities = 159/233 (68%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|||||||| | ||||| | || ||||| | ||| | ||| || ||| || || ||
Sbjct 544132 ATACCACCGCGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCC 544191
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| | || || |||| |||| ||| || || || ||||| | | ||| || || ||
Sbjct 544192 GAAAGAGTGCGGCCATCCTCCAGTTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGG 544251
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| ||||| || || || || || || || || || || | || || | ||
Sbjct 544252 GGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCC 544311
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
|| || || || |||||||| ||||| || ||||| | ||| |||||||||||
Sbjct 544312 ACCTCCAGGGTGATGGTTTTTCCAGTCAAGGTTTTCACAAAGATCTGCATTTT 544364
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984419580616500
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |