Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq4 136 1e-26 seq9 102 2e-16 >seq4 Length=9148293 Score = 136 bits (150), Expect = 1e-26 Identities = 192/266 (72%), Gaps = 3/266 (1%) Strand=Plus/Minus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| |||||| | ||| ||||| || || || ||| | |||||| || || ||| Sbjct 6348318 TCCATAGCCTTGATCAGACGTCGCTGGATGTAGCCGGTTTCGGCTGTTTTCACCGCCGTA 6348259 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCC 302693 || || ||||| ||||||| ||||||||||||||| | | |||| ||| ||| || || Sbjct 6348258 TCGATGAGACCCTCACGACCGCCCATAGCATGGAAGTAGAACTCTGACGG-CGTCAGACC 6348200 Query 302694 CCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAA 302753 | | | | ||| |||| || || || |||| |||||| || ||| |||| | || Sbjct 6348199 GGCTAGATACGAGTTCTCCACAAAGCCGCGCGACTCGGGACCATAATCGTCCTTGATGAA 6348140 Query 302754 GTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTG 302813 || ||||| || | || | ||||| ||||||||||| || || || ||||| || Sbjct 6348139 ATGCGGCAGTGTGCGCTTACGGAATCCGTACGGGATACGCTTGCCCTCCACATTCTGTTG 6348080 Query 302814 TCCCAGGCACGAAATCATCTGCGAAA 302839 ||||| ||| | ||| | ||| |||| Sbjct 6348079 TCCCACGCAAGCAATGACCTG-GAAA 6348055 >seq9 Length=30819483 Score = 102 bits (112), Expect = 2e-16 Identities = 148/204 (73%), Gaps = 4/204 (2%) Strand=Plus/Plus Query 251843 CGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCAT 251902 |||| ||||||||| ||| || |||||||||||||| ||||| ||||| |||||| | Sbjct 13441105 CGATTGTCATACGAGAGGGGATGGCATGGGGATTGATAATGATATCGGGGGCCAGTCCCT 13441164 Query 251903 CAGCA-GTGAAGGGCATATCCTTTTCCTCAATAATGTTTCCAATA-GTTCCCTTTTGTCC 251960 | ||| ||||||||||| |||| | | | ||| || ||| | | |||||||| ||||| Sbjct 13441165 C-GCAGGTGAAGGGCATGTCCTCCTGC-CGATACTGGATCCCACACGTTCCCTTCTGTCC 13441222 Query 251961 GTGACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAACCTT 252020 |||||| || ||||| || || || || ||| || || | |||| ||| Sbjct 13441223 GTGACGGGAGGCAAACTTGTCGCCGATCTGTGGGATGCGCACGGAGCGCACTCGAATCTT 13441282 Query 252021 ACAGAAGTTGTAACCATCACCGTT 252044 ||||| ||||| || || | ||| Sbjct 13441283 GCAGAACTTGTAGCCCTCGCTGTT 13441306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471727271794230