Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017
65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq4 136 1e-26
seq9 102 2e-16
>seq4
Length=9148293
Score = 136 bits (150), Expect = 1e-26
Identities = 192/266 (72%), Gaps = 3/266 (1%)
Strand=Plus/Minus
Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634
|||||| |||||| | ||| ||||| || || || ||| | |||||| || || |||
Sbjct 6348318 TCCATAGCCTTGATCAGACGTCGCTGGATGTAGCCGGTTTCGGCTGTTTTCACCGCCGTA 6348259
Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCC 302693
|| || ||||| ||||||| ||||||||||||||| | | |||| ||| ||| || ||
Sbjct 6348258 TCGATGAGACCCTCACGACCGCCCATAGCATGGAAGTAGAACTCTGACGG-CGTCAGACC 6348200
Query 302694 CCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAA 302753
| | | | ||| |||| || || || |||| |||||| || ||| |||| | ||
Sbjct 6348199 GGCTAGATACGAGTTCTCCACAAAGCCGCGCGACTCGGGACCATAATCGTCCTTGATGAA 6348140
Query 302754 GTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTG 302813
|| ||||| || | || | ||||| ||||||||||| || || || ||||| ||
Sbjct 6348139 ATGCGGCAGTGTGCGCTTACGGAATCCGTACGGGATACGCTTGCCCTCCACATTCTGTTG 6348080
Query 302814 TCCCAGGCACGAAATCATCTGCGAAA 302839
||||| ||| | ||| | ||| ||||
Sbjct 6348079 TCCCACGCAAGCAATGACCTG-GAAA 6348055
>seq9
Length=30819483
Score = 102 bits (112), Expect = 2e-16
Identities = 148/204 (73%), Gaps = 4/204 (2%)
Strand=Plus/Plus
Query 251843 CGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCAT 251902
|||| ||||||||| ||| || |||||||||||||| ||||| ||||| |||||| |
Sbjct 13441105 CGATTGTCATACGAGAGGGGATGGCATGGGGATTGATAATGATATCGGGGGCCAGTCCCT 13441164
Query 251903 CAGCA-GTGAAGGGCATATCCTTTTCCTCAATAATGTTTCCAATA-GTTCCCTTTTGTCC 251960
| ||| ||||||||||| |||| | | | ||| || ||| | | |||||||| |||||
Sbjct 13441165 C-GCAGGTGAAGGGCATGTCCTCCTGC-CGATACTGGATCCCACACGTTCCCTTCTGTCC 13441222
Query 251961 GTGACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAACCTT 252020
|||||| || ||||| || || || || ||| || || | |||| |||
Sbjct 13441223 GTGACGGGAGGCAAACTTGTCGCCGATCTGTGGGATGCGCACGGAGCGCACTCGAATCTT 13441282
Query 252021 ACAGAAGTTGTAACCATCACCGTT 252044
||||| ||||| || || | |||
Sbjct 13441283 GCAGAACTTGTAGCCCTCGCTGTT 13441306
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471727271794230
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |