Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017
65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq6 143 3e-28
seq4335 134 2e-25
seq9 109 7e-18
seq10 102 1e-15
>seq6
Length=9197557
Score = 143 bits (158), Expect = 3e-28
Identities = 242/347 (70%), Gaps = 4/347 (1%)
Strand=Plus/Minus
Query 1573895 GGGTCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGTCCTCTTGGG 1573954
|||||| || ||| ||||||||||||| ||| ||| || || || |||| | ||
Sbjct 8290671 GGGTCCTCCGGGCGTTGGCAAGACCACGACCATTCAGTGCCTCGCCCGCATCCTGCTCGG 8290612
Query 1573955 CGCGGCCGCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACGT 1574014
| | | | ||||| ||||| || || || || ||| ||||||||||| |||| ||
Sbjct 8290611 AGACAGCTACAAGGAGGCAGTGCTGGAGCTGAATGCCTCGAACGAGCGCGGCATCGATGT 8290552
Query 1574015 CGTGCGCAAGATCATCAAGCACCACGCCTC-CAAGAGGATCGAC-CTGCCGCCCGGACGC 1574072
|||||||| | |||||| ||| ||| ||| ||| || || || ||
Sbjct 8290551 GGTGCGCAACAAGATCAAGATGTTTGCCCAGCAAAAGGT--GACGCTACCCAAGGGCCGT 8290494
Query 1574073 CACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCCCTG 1574132
|||||| | | ||||| |||||||| ||| || | ||| || ||||||||||| |||
Sbjct 8290493 CACAAGATCGTTATCCTGGACGAGGCGGACAGCATGACGGAGGGCGCCCAGCAGGCGCTG 8290434
Query 1574133 CGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACACGTCG 1574192
|| ||||||||| | | | ||||||||| ||||| ||||| || ||||||||
Sbjct 8290433 CGTCGCACCATGGAGATCTATAGCAACACGACTCGCTTCGCCCTAGCCTGCAACACCAGC 8290374
Query 1574193 TCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCGCTT 1574239
|| | | |||||| | | || ||||||||||| ||||||||
Sbjct 8290373 GAGAAGATTATCGAGCCGATACAGTCGCGCTGCGCCATGCTGCGCTT 8290327
Score = 131 bits (144), Expect = 2e-24
Identities = 332/493 (67%), Gaps = 14/493 (3%)
Strand=Plus/Plus
Query 1852163 AAGGCAAATATCTTGCGCTGGTCG-CGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTG 1852221
|||| || ||||||||||| ||| ||||| ||||||||||| || || | |||| |
Sbjct 2100039 AAGGTGAAGATCTTGCGCTGATCGACGCCC-CCAAACTGGGCATCCACCTTTAGGTATTC 2100097
Query 1852222 CTCGTCGAGGGCCTGCATGAGCGGGTAGAGCACGTTGCTCAGGAGCGGGTTGCGGTCCAT 1852281
|||||| |||||||||| || ||||||| | || ||||| | ||
Sbjct 2100098 CTCGTCCAGGGCCTGCAGTCCAGGATAGAGCAGGCCTGAGAGCAGCGGATACTCTACCTG 2100157
Query 1852282 CTTGACCACCTGAGCGGCGGCCTTTTGCGC--CGTGCCG-GTGCGCACGTGCGCCGCGAG 1852338
|| || |||| ||| | ||||| | || ||||| | ||| ||| || | ||
Sbjct 2100158 TTTAACGACCTCGGCGCCCGCCTTCTTGGCATCGTGCTGCGTGACCAC---CGAGGATAG 2100214
Query 1852339 TCGGTAGAGGTCGAGCGCGTAGGCGCCGCCG-CA-CTGGTACTCGGTGCCGCGCACAAAC 1852396
||| | ||| || | ||| | || | || |||||| ||| |||| ||||||
Sbjct 2100215 CTTGTACACGTCCAGAGTGTA--CTCCTTGGACAGCTGGTAGTCGCTGCCCTTGACAAAC 2100272
Query 1852397 TCGAGTCCGCCCAGCGGCACGCCGATGT-GCTGGAGCATGGCCTTGATGGCAAACTCGTA 1852455
| || ||||||| ||||||||| ||| |||||||||||||| | ||||||
Sbjct 2100273 TTCAGCTTCTCCAGCGGAACGCCGATGGAGCTC-AGCATGGCCTTGATCACCTGCTCGTA 2100331
Query 1852456 CCAGCGGCACCGGTGTTCGACCAGGTCCCACGGCGTCTTGCCGTTGTCGAGGTGGGCGTG 1852515
| || || | || | ||| ||| |||| || |||||| || | ||||||
Sbjct 2100332 GTACTGGGTGCGCAGCTCCAGCAGCGACCAGGGCGCTTTCATGTTGTCCAGATAGGCGTG 2100391
Query 1852516 CACGTCGGCAAAGAGGATCTTGACCCGACAGCCGGCCTGGAGAAAGTCGGCCAGTTTGAA 1852575
| |||||||| || || | ||| |||||||||| || |||||||| | || |
Sbjct 2100392 GAGATCGGCAAACAGAATGGTTACCTCGCAGCCGGCCTTTAGGAAGTCGGCAATCTTCGA 2100451
Query 1852576 GATGGGCACAAAGTAGCCTAGGTGCGGGTTGCCCGTCGGCGCCGTGCCCCAATATATGAT 1852635
|| |||||||||||| | | || || || ||||||| |||||| ||||| || || |
Sbjct 2100452 CATCGGCACAAAGTAGGCGACATGTGGCTTTCCCGTCGTCGCCGTTCCCCAGTAGATCTT 2100511
Query 1852636 CAGGGGGCGCTCG 1852648
||| |||||||
Sbjct 2100512 TAGGTCGCGCTCG 2100524
Score = 102 bits (112), Expect = 1e-15
Identities = 131/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 1592113 CACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCACCCTCTT 1592172
||||||||||||| || ||||||| |||||| | | || |||||| || || |
Sbjct 327338 CACCGACGACATCATTCCCTGGGACATCGAGTTTCTCAAGGTGGAGCAGGGCATTGTCAT 327397
Query 1592173 TGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAA 1592232
||| | || || |||||||| ||| | ||||||||| | || | | || | |||
Sbjct 327398 CGAGCTAATGCTGGCCGCCAATTACATGGACATCAAGGGTTTGATGCAACTGACGGCCAA 327457
Query 1592233 GTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292
| |||||||||||||||||||||| | |||||| |||| || ||||||| ||||
Sbjct 327458 GCACCTGGCCAACATGATCAAGGGCAAAACTCCCGAGCAGATACGTCAGACCTTCCACAT 327517
Query 1592293 C 1592293
|
Sbjct 327518 C 327518
Score = 102 bits (112), Expect = 1e-15
Identities = 131/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 1592113 CACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCACCCTCTT 1592172
||||||||||||| || ||||||| |||||| | | || |||||| || || |
Sbjct 330183 CACCGACGACATCATTCCCTGGGACATCGAGTTTCTCAAGGTGGAGCAGGGCATTGTCAT 330242
Query 1592173 TGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAA 1592232
||| | || || |||||||| ||| | ||||||||| | || | | || | |||
Sbjct 330243 CGAGCTAATGCTGGCCGCCAATTACATGGACATCAAGGGTTTGATGCAACTGACGGCCAA 330302
Query 1592233 GTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292
| |||||||||||||||||||||| | |||||| |||| || ||||||| ||||
Sbjct 330303 GCACCTGGCCAACATGATCAAGGGCAAAACTCCCGAGCAGATACGTCAGACCTTCCACAT 330362
Query 1592293 C 1592293
|
Sbjct 330363 C 330363
Score = 102 bits (112), Expect = 1e-15
Identities = 131/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 1592113 CACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCACCCTCTT 1592172
||||||||||||| || ||||||| |||||| | | || |||||| || || |
Sbjct 333027 CACCGACGACATCATTCCCTGGGACATCGAGTTTCTCAAGGTGGAGCAGGGCATTGTCAT 333086
Query 1592173 TGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAA 1592232
||| | || || |||||||| ||| | ||||||||| | || | | || | |||
Sbjct 333087 CGAGCTAATGCTGGCCGCCAATTACATGGACATCAAGGGTTTGATGCAACTGACGGCCAA 333146
Query 1592233 GTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292
| |||||||||||||||||||||| | |||||| |||| || ||||||| ||||
Sbjct 333147 GCACCTGGCCAACATGATCAAGGGCAAAACTCCCGAGCAGATACGTCAGACCTTCCACAT 333206
Query 1592293 C 1592293
|
Sbjct 333207 C 333207
>seq4335
Length=17130
Score = 134 bits (148), Expect = 2e-25
Identities = 143/189 (76%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 1592108 AAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCACC 1592167
|||||||||||||||||| |||||||| || || | | || || ||| |||
Sbjct 2999 AAGCGCACCGACGACATCATCTCGTGGGACGCCGATTTCCTCAAAGTAGACCAGGGCACA 2940
Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227
||||| ||| | ||||| |||||||| || || || |||||| | ||||||| ||
Sbjct 2939 CTCTTCGAGCTAATCCTGGCCGCCAATTATCTAGATATCAAGGGTTTGCTCGAGCTGACT 2880
Query 1592228 TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTT 1592287
|||||| | ||||| |||||||| ||||| ||| | || |||||||| || ||||| |||
Sbjct 2879 TGCAAGACCGTGGCAAACATGATTAAGGGAAAGACTCCAGAGGAGATACGTAAGACTTTT 2820
Query 1592288 AACATCAAG 1592296
||||| |||
Sbjct 2819 AACATTAAG 2811
Score = 129 bits (142), Expect = 7e-24
Identities = 142/189 (75%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 1592108 AAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCACC 1592167
|||||||||||||||||| |||||||| || || | | || || ||| |||
Sbjct 9996 AAGCGCACCGACGACATCATCTCGTGGGACGCCGATTTCCTCAAAGTAGACCAGGGCACA 9937
Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227
||||| ||| | ||||| |||||||| || || || |||||| | ||||||| ||
Sbjct 9936 CTCTTCGAGCTAATCCTGGCCGCCAATTATCTAGATATCAAGGGTTTGCTCGAGCTGACT 9877
Query 1592228 TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTT 1592287
|||| | | ||||| |||||||| ||||| ||| | || |||||||| || ||||| |||
Sbjct 9876 TGCAGGACCGTGGCAAACATGATTAAGGGAAAGACTCCAGAGGAGATACGTAAGACTTTT 9817
Query 1592288 AACATCAAG 1592296
||||| |||
Sbjct 9816 AACATTAAG 9808
>seq9
Length=30819483
Score = 109 bits (120), Expect = 7e-18
Identities = 138/190 (73%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 1592107 GAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCAC 1592166
|||||||||||||||||| |||||||| || || | | || || ||| |||
Sbjct 5509800 GAAGCGCACCGACGACATTATCCCGTGGGATGCCGAATTCCTCAAGGTAGACCAGGGCAC 5509741
Query 1592167 CCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGG 1592226
||||| ||| | || || |||||||| || || || |||||| | |||||| |
Sbjct 5509740 ACTCTTCGAGCTAATGCTGGCCGCCAATTATCTGGATATCAAGGGTTTGCTCGTGGTGTC 5509681
Query 1592227 GTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTT 1592286
|||||| | |||||||| ||||| | ||| || | || ||||| || |||||||| ||
Sbjct 5509680 TTGCAAGACCGTGGCCAATATGATGAGGGGTAAAACTCCAGAGGAAATGCGCAAGACTTT 5509621
Query 1592287 TAACATCAAG 1592296
|||||||||
Sbjct 5509620 CAACATCAAG 5509611
Score = 104 bits (114), Expect = 3e-16
Identities = 137/190 (72%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 1592107 GAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCAC 1592166
|||||||||||||||||| |||||||| || || | | || || ||| |||
Sbjct 5507499 GAAGCGCACCGACGACATTATCCCGTGGGATGCCGAATTCCTCAAGGTAGACCAGGGCAC 5507440
Query 1592167 CCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGG 1592226
||||| | | | || | |||||||| || || || |||||| | ||||||| |
Sbjct 5507439 ACTCTTCGGGCTAATGCAGGCCGCCAATTATCTGGATATCAAGGGTTTGCTCGAGGTGTC 5507380
Query 1592227 GTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTT 1592286
||||| | |||||||| ||||| | | ||||| | || ||||| || |||||||| ||
Sbjct 5507379 TTGCAATACCGTGGCCAATATGATGATGTGCAAGACTCCAGAGGAAATACGCAAGACTTT 5507320
Query 1592287 TAACATCAAG 1592296
|||||||||
Sbjct 5507319 CAACATCAAG 5507310
>seq10
Length=19787792
Score = 102 bits (112), Expect = 1e-15
Identities = 164/236 (69%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 868699 GTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCAT 868758
||||||| |||| | ||| || ||||| ||||| || || |||||||||| ||||||
Sbjct 12207748 GTACTCGGCCACCTTCTTCTCAAAGAAGTTTGTCTTTCCGTCCAGCGAGATCATCTCCAT 12207807
Query 868759 CCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCG 868818
| ||| || || || |||||| ||| | |||||| | | ||||| ||
Sbjct 12207808 GAAATTGAAAGGATTCTTAGTGTTGTAGATCTTACCCACACCGAGCTCCCCTAGCAGCCG 12207867
Query 868819 GTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCAC 868878
||||| || ||||||||||||||| ||||||| | ||||||||| || | ||
Sbjct 12207868 ATCGGCCACGAACTCGATGTACTGGGACATGAGAACACAGTTCATGCCAATCAAATTGAC 12207927
Query 868879 CGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGATCT 868934
||||| | || | | ||||| | |||||| || || || || ||||||||
Sbjct 12207928 GGGCAGGGCTTCAGTGAGGAACTCCTGCTCGATTTCCACAGCATCCCTGATGATCT 12207983
Score = 102 bits (112), Expect = 1e-15
Identities = 164/234 (70%), Gaps = 4/234 (2%)
Strand=Plus/Plus
Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692
||||| | ||||| ||||| |||||||||||||| ||| | |||||| | ||
Sbjct 12208337 GAGTGCACATTCTCCATGGCTATCTGGAAGCCGTAGAAGCAACGTGCCTCTGTGATCTGC 12208396
Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752
||||||| | || || || |||| |||||| || |||||||| ||| |||||
Sbjct 12208397 ACCTCCTGACTAAAGCGCTCGACCAGATTCTCGTTAACAATGCCGTCCGAGGCAGCGAAG 12208456
Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812
|| ||||| || || |||||||| |||||||| ||| |||| ||||||
Sbjct 12208457 AAGGCCAGCACATGGGAGATAAAGTAGCGCTCGTTGTCAGTGAGACGGGCCCAGTCCGTC 12208516
Query 869813 GTGTCGGCGCTG--AGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCT 869864
| ||| | || || |||||||| || | ||||||| |||||||| ||||
Sbjct 12208517 GCGTC--CTTTGATAGATCCACCTCTTCCACAGTCCAGAAGGAGGCCTCCGCCT 12208568
Score = 100 bits (110), Expect = 3e-15
Identities = 109/145 (75%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238
||||||||| || ||||| |||||| |||| || ||||||||||| || |||||
Sbjct 12208054 ACCTTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTT 12208113
Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298
||| ||||||||||| | | || ||||| || ||||| || || ||||| |||||
Sbjct 12208114 CTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAAAGAAGATTCCTTCCACGGCCGCAAA 12208173
Query 869299 GCCGATGAGCCGCTCGGCAAAGGTG 869323
| | || | |||||||||||| ||
Sbjct 12208174 GGCAATAATACGCTCGGCAAAGTTG 12208198
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6106746110168430
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