Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq6 143 3e-28 seq4335 134 2e-25 seq9 109 7e-18 seq10 102 1e-15 >seq6 Length=9197557 Score = 143 bits (158), Expect = 3e-28 Identities = 242/347 (70%), Gaps = 4/347 (1%) Strand=Plus/Minus Query 1573895 GGGTCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGTCCTCTTGGG 1573954 |||||| || ||| ||||||||||||| ||| ||| || || || |||| | || Sbjct 8290671 GGGTCCTCCGGGCGTTGGCAAGACCACGACCATTCAGTGCCTCGCCCGCATCCTGCTCGG 8290612 Query 1573955 CGCGGCCGCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACGT 1574014 | | | | ||||| ||||| || || || || ||| ||||||||||| |||| || Sbjct 8290611 AGACAGCTACAAGGAGGCAGTGCTGGAGCTGAATGCCTCGAACGAGCGCGGCATCGATGT 8290552 Query 1574015 CGTGCGCAAGATCATCAAGCACCACGCCTC-CAAGAGGATCGAC-CTGCCGCCCGGACGC 1574072 |||||||| | |||||| ||| ||| ||| ||| || || || || Sbjct 8290551 GGTGCGCAACAAGATCAAGATGTTTGCCCAGCAAAAGGT--GACGCTACCCAAGGGCCGT 8290494 Query 1574073 CACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCCCTG 1574132 |||||| | | ||||| |||||||| ||| || | ||| || ||||||||||| ||| Sbjct 8290493 CACAAGATCGTTATCCTGGACGAGGCGGACAGCATGACGGAGGGCGCCCAGCAGGCGCTG 8290434 Query 1574133 CGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACACGTCG 1574192 || ||||||||| | | | ||||||||| ||||| ||||| || |||||||| Sbjct 8290433 CGTCGCACCATGGAGATCTATAGCAACACGACTCGCTTCGCCCTAGCCTGCAACACCAGC 8290374 Query 1574193 TCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCGCTT 1574239 || | | |||||| | | || ||||||||||| |||||||| Sbjct 8290373 GAGAAGATTATCGAGCCGATACAGTCGCGCTGCGCCATGCTGCGCTT 8290327 Score = 131 bits (144), Expect = 2e-24 Identities = 332/493 (67%), Gaps = 14/493 (3%) Strand=Plus/Plus Query 1852163 AAGGCAAATATCTTGCGCTGGTCG-CGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTG 1852221 |||| || ||||||||||| ||| ||||| ||||||||||| || || | |||| | Sbjct 2100039 AAGGTGAAGATCTTGCGCTGATCGACGCCC-CCAAACTGGGCATCCACCTTTAGGTATTC 2100097 Query 1852222 CTCGTCGAGGGCCTGCATGAGCGGGTAGAGCACGTTGCTCAGGAGCGGGTTGCGGTCCAT 1852281 |||||| |||||||||| || ||||||| | || ||||| | || Sbjct 2100098 CTCGTCCAGGGCCTGCAGTCCAGGATAGAGCAGGCCTGAGAGCAGCGGATACTCTACCTG 2100157 Query 1852282 CTTGACCACCTGAGCGGCGGCCTTTTGCGC--CGTGCCG-GTGCGCACGTGCGCCGCGAG 1852338 || || |||| ||| | ||||| | || ||||| | ||| ||| || | || Sbjct 2100158 TTTAACGACCTCGGCGCCCGCCTTCTTGGCATCGTGCTGCGTGACCAC---CGAGGATAG 2100214 Query 1852339 TCGGTAGAGGTCGAGCGCGTAGGCGCCGCCG-CA-CTGGTACTCGGTGCCGCGCACAAAC 1852396 ||| | ||| || | ||| | || | || |||||| ||| |||| |||||| Sbjct 2100215 CTTGTACACGTCCAGAGTGTA--CTCCTTGGACAGCTGGTAGTCGCTGCCCTTGACAAAC 2100272 Query 1852397 TCGAGTCCGCCCAGCGGCACGCCGATGT-GCTGGAGCATGGCCTTGATGGCAAACTCGTA 1852455 | || ||||||| ||||||||| ||| |||||||||||||| | |||||| Sbjct 2100273 TTCAGCTTCTCCAGCGGAACGCCGATGGAGCTC-AGCATGGCCTTGATCACCTGCTCGTA 2100331 Query 1852456 CCAGCGGCACCGGTGTTCGACCAGGTCCCACGGCGTCTTGCCGTTGTCGAGGTGGGCGTG 1852515 | || || | || | ||| ||| |||| || |||||| || | |||||| Sbjct 2100332 GTACTGGGTGCGCAGCTCCAGCAGCGACCAGGGCGCTTTCATGTTGTCCAGATAGGCGTG 2100391 Query 1852516 CACGTCGGCAAAGAGGATCTTGACCCGACAGCCGGCCTGGAGAAAGTCGGCCAGTTTGAA 1852575 | |||||||| || || | ||| |||||||||| || |||||||| | || | Sbjct 2100392 GAGATCGGCAAACAGAATGGTTACCTCGCAGCCGGCCTTTAGGAAGTCGGCAATCTTCGA 2100451 Query 1852576 GATGGGCACAAAGTAGCCTAGGTGCGGGTTGCCCGTCGGCGCCGTGCCCCAATATATGAT 1852635 || |||||||||||| | | || || || ||||||| |||||| ||||| || || | Sbjct 2100452 CATCGGCACAAAGTAGGCGACATGTGGCTTTCCCGTCGTCGCCGTTCCCCAGTAGATCTT 2100511 Query 1852636 CAGGGGGCGCTCG 1852648 ||| ||||||| Sbjct 2100512 TAGGTCGCGCTCG 2100524 Score = 102 bits (112), Expect = 1e-15 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 1592113 CACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCACCCTCTT 1592172 ||||||||||||| || ||||||| |||||| | | || |||||| || || | Sbjct 327338 CACCGACGACATCATTCCCTGGGACATCGAGTTTCTCAAGGTGGAGCAGGGCATTGTCAT 327397 Query 1592173 TGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAA 1592232 ||| | || || |||||||| ||| | ||||||||| | || | | || | ||| Sbjct 327398 CGAGCTAATGCTGGCCGCCAATTACATGGACATCAAGGGTTTGATGCAACTGACGGCCAA 327457 Query 1592233 GTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292 | |||||||||||||||||||||| | |||||| |||| || ||||||| |||| Sbjct 327458 GCACCTGGCCAACATGATCAAGGGCAAAACTCCCGAGCAGATACGTCAGACCTTCCACAT 327517 Query 1592293 C 1592293 | Sbjct 327518 C 327518 Score = 102 bits (112), Expect = 1e-15 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 1592113 CACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCACCCTCTT 1592172 ||||||||||||| || ||||||| |||||| | | || |||||| || || | Sbjct 330183 CACCGACGACATCATTCCCTGGGACATCGAGTTTCTCAAGGTGGAGCAGGGCATTGTCAT 330242 Query 1592173 TGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAA 1592232 ||| | || || |||||||| ||| | ||||||||| | || | | || | ||| Sbjct 330243 CGAGCTAATGCTGGCCGCCAATTACATGGACATCAAGGGTTTGATGCAACTGACGGCCAA 330302 Query 1592233 GTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292 | |||||||||||||||||||||| | |||||| |||| || ||||||| |||| Sbjct 330303 GCACCTGGCCAACATGATCAAGGGCAAAACTCCCGAGCAGATACGTCAGACCTTCCACAT 330362 Query 1592293 C 1592293 | Sbjct 330363 C 330363 Score = 102 bits (112), Expect = 1e-15 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 1592113 CACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCACCCTCTT 1592172 ||||||||||||| || ||||||| |||||| | | || |||||| || || | Sbjct 333027 CACCGACGACATCATTCCCTGGGACATCGAGTTTCTCAAGGTGGAGCAGGGCATTGTCAT 333086 Query 1592173 TGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAA 1592232 ||| | || || |||||||| ||| | ||||||||| | || | | || | ||| Sbjct 333087 CGAGCTAATGCTGGCCGCCAATTACATGGACATCAAGGGTTTGATGCAACTGACGGCCAA 333146 Query 1592233 GTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292 | |||||||||||||||||||||| | |||||| |||| || ||||||| |||| Sbjct 333147 GCACCTGGCCAACATGATCAAGGGCAAAACTCCCGAGCAGATACGTCAGACCTTCCACAT 333206 Query 1592293 C 1592293 | Sbjct 333207 C 333207 >seq4335 Length=17130 Score = 134 bits (148), Expect = 2e-25 Identities = 143/189 (76%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 1592108 AAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCACC 1592167 |||||||||||||||||| |||||||| || || | | || || ||| ||| Sbjct 2999 AAGCGCACCGACGACATCATCTCGTGGGACGCCGATTTCCTCAAAGTAGACCAGGGCACA 2940 Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227 ||||| ||| | ||||| |||||||| || || || |||||| | ||||||| || Sbjct 2939 CTCTTCGAGCTAATCCTGGCCGCCAATTATCTAGATATCAAGGGTTTGCTCGAGCTGACT 2880 Query 1592228 TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTT 1592287 |||||| | ||||| |||||||| ||||| ||| | || |||||||| || ||||| ||| Sbjct 2879 TGCAAGACCGTGGCAAACATGATTAAGGGAAAGACTCCAGAGGAGATACGTAAGACTTTT 2820 Query 1592288 AACATCAAG 1592296 ||||| ||| Sbjct 2819 AACATTAAG 2811 Score = 129 bits (142), Expect = 7e-24 Identities = 142/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 1592108 AAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCACC 1592167 |||||||||||||||||| |||||||| || || | | || || ||| ||| Sbjct 9996 AAGCGCACCGACGACATCATCTCGTGGGACGCCGATTTCCTCAAAGTAGACCAGGGCACA 9937 Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227 ||||| ||| | ||||| |||||||| || || || |||||| | ||||||| || Sbjct 9936 CTCTTCGAGCTAATCCTGGCCGCCAATTATCTAGATATCAAGGGTTTGCTCGAGCTGACT 9877 Query 1592228 TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTT 1592287 |||| | | ||||| |||||||| ||||| ||| | || |||||||| || ||||| ||| Sbjct 9876 TGCAGGACCGTGGCAAACATGATTAAGGGAAAGACTCCAGAGGAGATACGTAAGACTTTT 9817 Query 1592288 AACATCAAG 1592296 ||||| ||| Sbjct 9816 AACATTAAG 9808 >seq9 Length=30819483 Score = 109 bits (120), Expect = 7e-18 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 1592107 GAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCAC 1592166 |||||||||||||||||| |||||||| || || | | || || ||| ||| Sbjct 5509800 GAAGCGCACCGACGACATTATCCCGTGGGATGCCGAATTCCTCAAGGTAGACCAGGGCAC 5509741 Query 1592167 CCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGG 1592226 ||||| ||| | || || |||||||| || || || |||||| | |||||| | Sbjct 5509740 ACTCTTCGAGCTAATGCTGGCCGCCAATTATCTGGATATCAAGGGTTTGCTCGTGGTGTC 5509681 Query 1592227 GTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTT 1592286 |||||| | |||||||| ||||| | ||| || | || ||||| || |||||||| || Sbjct 5509680 TTGCAAGACCGTGGCCAATATGATGAGGGGTAAAACTCCAGAGGAAATGCGCAAGACTTT 5509621 Query 1592287 TAACATCAAG 1592296 ||||||||| Sbjct 5509620 CAACATCAAG 5509611 Score = 104 bits (114), Expect = 3e-16 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 1592107 GAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCAC 1592166 |||||||||||||||||| |||||||| || || | | || || ||| ||| Sbjct 5507499 GAAGCGCACCGACGACATTATCCCGTGGGATGCCGAATTCCTCAAGGTAGACCAGGGCAC 5507440 Query 1592167 CCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGG 1592226 ||||| | | | || | |||||||| || || || |||||| | ||||||| | Sbjct 5507439 ACTCTTCGGGCTAATGCAGGCCGCCAATTATCTGGATATCAAGGGTTTGCTCGAGGTGTC 5507380 Query 1592227 GTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTT 1592286 ||||| | |||||||| ||||| | | ||||| | || ||||| || |||||||| || Sbjct 5507379 TTGCAATACCGTGGCCAATATGATGATGTGCAAGACTCCAGAGGAAATACGCAAGACTTT 5507320 Query 1592287 TAACATCAAG 1592296 ||||||||| Sbjct 5507319 CAACATCAAG 5507310 >seq10 Length=19787792 Score = 102 bits (112), Expect = 1e-15 Identities = 164/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 868699 GTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCAT 868758 ||||||| |||| | ||| || ||||| ||||| || || |||||||||| |||||| Sbjct 12207748 GTACTCGGCCACCTTCTTCTCAAAGAAGTTTGTCTTTCCGTCCAGCGAGATCATCTCCAT 12207807 Query 868759 CCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCG 868818 | ||| || || || |||||| ||| | |||||| | | ||||| || Sbjct 12207808 GAAATTGAAAGGATTCTTAGTGTTGTAGATCTTACCCACACCGAGCTCCCCTAGCAGCCG 12207867 Query 868819 GTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCAC 868878 ||||| || ||||||||||||||| ||||||| | ||||||||| || | || Sbjct 12207868 ATCGGCCACGAACTCGATGTACTGGGACATGAGAACACAGTTCATGCCAATCAAATTGAC 12207927 Query 868879 CGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGATCT 868934 ||||| | || | | ||||| | |||||| || || || || |||||||| Sbjct 12207928 GGGCAGGGCTTCAGTGAGGAACTCCTGCTCGATTTCCACAGCATCCCTGATGATCT 12207983 Score = 102 bits (112), Expect = 1e-15 Identities = 164/234 (70%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||| | ||||| ||||| |||||||||||||| ||| | |||||| | || Sbjct 12208337 GAGTGCACATTCTCCATGGCTATCTGGAAGCCGTAGAAGCAACGTGCCTCTGTGATCTGC 12208396 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||||| | || || || |||| |||||| || |||||||| ||| ||||| Sbjct 12208397 ACCTCCTGACTAAAGCGCTCGACCAGATTCTCGTTAACAATGCCGTCCGAGGCAGCGAAG 12208456 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || ||||| || || |||||||| |||||||| ||| |||| |||||| Sbjct 12208457 AAGGCCAGCACATGGGAGATAAAGTAGCGCTCGTTGTCAGTGAGACGGGCCCAGTCCGTC 12208516 Query 869813 GTGTCGGCGCTG--AGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCT 869864 | ||| | || || |||||||| || | ||||||| |||||||| |||| Sbjct 12208517 GCGTC--CTTTGATAGATCCACCTCTTCCACAGTCCAGAAGGAGGCCTCCGCCT 12208568 Score = 100 bits (110), Expect = 3e-15 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||||||||| || ||||| |||||| |||| || ||||||||||| || ||||| Sbjct 12208054 ACCTTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTT 12208113 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||| ||||||||||| | | || ||||| || ||||| || || ||||| ||||| Sbjct 12208114 CTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAAAGAAGATTCCTTCCACGGCCGCAAA 12208173 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTG 869323 | | || | |||||||||||| || Sbjct 12208174 GGCAATAATACGCTCGGCAAAGTTG 12208198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106746110168430