Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017
65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters
Query= NC_021924.1
Length=129052
Score E
Sequences producing significant alignments: (Bits) Value
seq9 145 6e-30
seq12 82.4 6e-11
>seq9
Length=30819483
Score = 145 bits (160), Expect = 6e-30
Identities = 155/201 (77%), Gaps = 8/201 (4%)
Strand=Plus/Minus
Query 34447 GTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGACGTCCAA-- 34504
||||| ||||||||||| || || |||||||||||||| || |||||||||| ||||
Sbjct 25248627 GTTTGAGCGCCCAGCTCACAGCCAAAGTACTTTGTCGGATAGGTGGCCGGACGACCAATA 25248568
Query 34505 GCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTTCCTT 34564
|||| | || | ||| | ||| || || | |||||||||||||||||||| |||||||
Sbjct 25248567 GCGCGT--GCAACTTCAGCCATATTAACCAAAACAGTCTTGATGCCGTTGCCTTTTCCTT 25248510
Query 34565 CGACCTTGGC--GCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACATTGCG 34622
| ||||| || | ||| ||||||||||| || || || || || | |||| | ||
Sbjct 25248509 CTACCTTTGCTTGAAGA--CGCGGCATTTTATATCGATAAAAGATATCTGTCACACTACG 25248452
Query 34623 GTTAACGTTCACAGTCCCCAT 34643
||||||||| || || ||||
Sbjct 25248451 GTTAACGTTGACGGTGGCCAT 25248431
>seq12
Length=1235759
Score = 82.4 bits (90), Expect = 6e-11
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329
||||||||||| || || |||||| | || ||||| ||||| ||| | || |||||
Sbjct 219165 AAAATGCAAATCTTCGTGAAAACTCTCACTGGCAAGACCATCACCTTGGAGGTCGAGCCC 219224
Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389
|| || ||| | || || ||||| ||||| || ||| | ||| |||
Sbjct 219225 TCTGACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGAT 219284
Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449
|| || | || || | || || || ||||||||||||| | | || || | || |||
Sbjct 219285 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTAC 219344
Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499
||||| || || || || || ||||| ||||| | | ||||| || ||
Sbjct 219345 AACATCCAGAAGGAGTCGACCCTGCACTTGGTGCTCCGCCTGCGCGGTGG 219394
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 412817499081470
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |