Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq9 145 6e-30 seq12 82.4 6e-11 >seq9 Length=30819483 Score = 145 bits (160), Expect = 6e-30 Identities = 155/201 (77%), Gaps = 8/201 (4%) Strand=Plus/Minus Query 34447 GTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGACGTCCAA-- 34504 ||||| ||||||||||| || || |||||||||||||| || |||||||||| |||| Sbjct 25248627 GTTTGAGCGCCCAGCTCACAGCCAAAGTACTTTGTCGGATAGGTGGCCGGACGACCAATA 25248568 Query 34505 GCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTTCCTT 34564 |||| | || | ||| | ||| || || | |||||||||||||||||||| ||||||| Sbjct 25248567 GCGCGT--GCAACTTCAGCCATATTAACCAAAACAGTCTTGATGCCGTTGCCTTTTCCTT 25248510 Query 34565 CGACCTTGGC--GCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACATTGCG 34622 | ||||| || | ||| ||||||||||| || || || || || | |||| | || Sbjct 25248509 CTACCTTTGCTTGAAGA--CGCGGCATTTTATATCGATAAAAGATATCTGTCACACTACG 25248452 Query 34623 GTTAACGTTCACAGTCCCCAT 34643 ||||||||| || || |||| Sbjct 25248451 GTTAACGTTGACGGTGGCCAT 25248431 >seq12 Length=1235759 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 ||||||||||| || || |||||| | || ||||| ||||| ||| | || ||||| Sbjct 219165 AAAATGCAAATCTTCGTGAAAACTCTCACTGGCAAGACCATCACCTTGGAGGTCGAGCCC 219224 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 || || ||| | || || ||||| ||||| || ||| | ||| ||| Sbjct 219225 TCTGACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGAT 219284 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || | || || | || || || ||||||||||||| | | || || | || ||| Sbjct 219285 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTAC 219344 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| || || || || || ||||| ||||| | | ||||| || || Sbjct 219345 AACATCCAGAAGGAGTCGACCCTGCACTTGGTGCTCCGCCTGCGCGGTGG 219394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412817499081470