Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017
65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq9 176 3e-38
seq1665 120 2e-21
>seq9
Length=30819483
Score = 176 bits (194), Expect = 3e-38
Identities = 563/869 (65%), Gaps = 12/869 (1%)
Strand=Plus/Minus
Query 282018 AATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 282077
|||| | || ||||||| ||| |||| ||||| | | || || || || || || |
Sbjct 28008057 AATCGGTACCCTCGAACAGAGAGTCAATCTCAATGCTGGCCTGGGTGGACGACGAGAGGG 28007998
Query 282078 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTA----AGGCTT-TTGCTGATTG 282132
||| || || || || || || || | || | || | | |||| |||||| |
Sbjct 28007997 TACGCTTTGCGCGCTCGCAGGCGGTGCGCAGACGACGCAGAGCACGCTTGTTGCTGGT-- 28007940
Query 282133 ATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATT 282192
|| || | || | || | |||||| || | ||| | || || ||||| ||
Sbjct 28007939 ---CAGGTCCTTCTTGTGCTTGCGCTTGAACTCCTGCACAAAGTGGGTCACTAGACGGTT 28007883
Query 282193 ATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCC 282252
|| ||||| ||||| || | | |||| || | ||||| | | || | ||| | ||
Sbjct 28007882 GTCGAAATCCTCACCACCAAGATGGGTATCACCGGCCGTAGATTTGACCTCGAAGATGCC 28007823
Query 282253 ATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTAC 282312
|| || | |||| || | ||||| ||| || ||||||| ||| |||||||| ||
Sbjct 28007822 GTCATCGATCGACAGAATGGACACATCGAAGGTACCGCCACCCAGATCGAAAATAAGCAC 28007763
Query 282313 ATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTC 282372
|| || | || || || || ||||| || | |||||| || || || ||
Sbjct 28007762 GTTGCGCTCACCAACAGCCTTCTTGTCCAGGCCATAGGCGATAGCAGCGGCTGTGGGCTC 28007703
Query 282373 ATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCT 282432
|| || || | || ||||| | || ||||| | || ||||| || || || || |
Sbjct 28007702 GTTGATGATACGCAGCACATTCAATCCGGCAATGGTACCGGCATCCTTGGTCGCCTGACG 28007643
Query 282433 TTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAAT 282492
|| || ||||| || || || || ||||| || ||||||| || ||| || || |
Sbjct 28007642 CTGCGAGTCGTTGAAGTAGGCTGGCACAGTGATGACGGCATTGGTCACTGTCTTGCCCAG 28007583
Query 282493 ATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGA 282552
|| || || || | |||||||| | || | ||| || || || | || || ||
Sbjct 28007582 GTACGCCTCGGCGGTCTCCTTCATTTTGGTCAACACCATGGAGGAGATCTCCTCGGG-GA 28007524
Query 282553 ATATTG-CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAA 282611
| | | ||| |||| | || | || |||| | || || | | || | |
Sbjct 28007523 AGAAGGTCTTCTTCTCATCCTTGTACGTAACCTCAATCTTGGGCTTGCCATCTACGCTGA 28007464
Query 282612 TAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTAC 282671
|| | || ||||| | ||||| || || || ||| || | ||| | | ||
Sbjct 28007463 CCACATCGAAGGGCCAGTGCTTCATGTCAGACTGCACAGCAGAATCCTCAAACTTGCGAC 28007404
Query 282672 CAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGG 282731
|||| | || || ||||| || || || | |||||| || | || | |||| ||||
Sbjct 28007403 CAATCAGACGCTTGGCATCGAAGATCGTTTGGGTTGGGTTCATCGCCACCTGATTCTTGG 28007344
Query 282732 CTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGAT 282791
| ||||| ||||||| | | || || || || || | |||||| ||||| || || ||||
Sbjct 28007343 CGGCATCACCAATCAAACGCTCCGTGTCCGTGAAGGCAACATAGGATGGTGTCGTACGAT 28007284
Query 282792 TACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAA 282851
|||| || || || ||||| || || || || |||| || | ||||| ||||||
Sbjct 28007283 TACCCTGGTCGTTGGCAATGATCTCGACCTTGCCATGCTGGAACACACCCACACAAGAGT 28007224
Query 282852 AAGTTGTTCCTAAATCAATACCAATAGCA 282880
| ||||| || ||||||||||||| ||||
Sbjct 28007223 AGGTTGTGCCCAAATCAATACCAACAGCA 28007195
Score = 107 bits (118), Expect = 1e-17
Identities = 447/703 (64%), Gaps = 2/703 (0%)
Strand=Plus/Plus
Query 282179 GTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTT 282238
|| || ||||| || || ||||| ||||| || | | |||| || | ||||| | |
Sbjct 27747872 GTCACTAGACGGTTGTCGAAATCCTCACCACCAAGATGGGTATCACCGGCCGTAGATTTG 27747931
Query 282239 ACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATA 282298
|| | ||| | ||||| | | || | || | ||||| ||| || ||||||| |
Sbjct 27747932 ACCTTGAAGATGCCATCATTGATCGAAAGAATGGACACATCGAAGGTACCGCCACCCAGA 27747991
Query 282299 TCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCA 282358
|| |||||||| || || || | || || || || ||||| || | |||
Sbjct 27747992 TCGAAAATAAGCACGTTGCGCTCACCAACAGCCTTCTTGTCCAGGCCATAGGCGATTGCA 27748051
Query 282359 GCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCT 282418
|| || || || || || || || | || || || | ||| || || | || |||||
Sbjct 27748052 GCGGCCGTGGGCTCGTTGATGATACGCAGGACTTTCAAACCGGCGATGGTACCGGCATCC 27748111
Query 282419 TTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTT 282478
|| || || || | || || ||||| || | || || |||| || || || | ||
Sbjct 27748112 TTGGTAGCCTGACGCTGCGAGTCGTTGAAGTGGGCTGGCACAGAGATGACAGCTTTGGTC 27748171
Query 282479 ACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAA 282538
|| || || | || | || || | |||||||| | || | ||| | ||
Sbjct 27748172 ACCGTCTTGCCCAGGTACTCCTCGGCGGTCTCCTTCATTTTGGTCAACACCATGGCAGAG 27748231
Query 282539 ATTTGTTCTGGAGAATATTG-CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTT 282597
|| | || || ||| | | ||| || | | || | || |||| | || ||
Sbjct 27748232 ATCTCCTC-GGCGAAGAAGGTCTTCTTCTCGTCCTTGTACGTAACCTCAATCTTGGGCTT 27748290
Query 282598 ATTACCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTC 282657
| ||| | | || | || ||||| || ||||| || | || ||| ||
Sbjct 27748291 GCCGTCTACACTGACCACATCGAAGGGCCAGTACTTCATGTCAGCCTGGACAGCAGAATC 27748350
Query 282658 ATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGC 282717
||||| | | |||||| | || || | || || || | | | |||| || || |
Sbjct 27748351 CTTAAACTTGCGACCAATCAGACGCTTCGATTCGAAGATCCTCTGGTTTGGGTTCACCGT 27748410
Query 282718 AGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGA 282777
| || | ||||| ||||| ||||||| | || || || || || | |||||| ||
Sbjct 27748411 CACCTGGTTCTTGGCGGCATCACCAATCAAGCGCTCCGTATCCGTGAAGGCAACATAGGA 27748470
Query 282778 TGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATAC 282837
|| || || |||||||| || || || ||||| || || || || ||||| || | ||
Sbjct 27748471 TGATGTGGTACGATTACCCTGGTCGTTGGCAATGATCTCGACCTTGCCATTCTGGAACAC 27748530
Query 282838 ACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 282880
||| ||||| | |||||| || ||||||||||||||||||
Sbjct 27748531 ACCCACACAGCAGTGAGTTGTGCCCAAATCAATACCAATAGCA 27748573
>seq1665
Length=7720
Score = 120 bits (132), Expect = 2e-21
Identities = 125/164 (76%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 637126 GTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGATCAACT 637185
|| |||| |||||| || ||||| || || | |||||| |||| || ||| | || ||
Sbjct 6624 GTGGATTTTTCTTCACCTAATATAGCCAAGCAGATGCATGTTGGTCACTTACGCTCTACA 6683
Query 637186 ATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACACGATGTTTATCGTATT 637245
|||||||| ||||| |||| | || | ||| | | |||||| || ||||||
Sbjct 6684 ATTATTGGCGAATCAGTTTGCCGCTTACTGGAATTTTTGCAACACGACGTAATTCGTATA 6743
Query 637246 AATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGC 637289
|||||| | |||||||||||||| ||||||||||||||||||||
Sbjct 6744 AATCATCTTGGTGATTGGGGAACACAATTCGGTATGTTAATTGC 6787
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740395231242540
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |