Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq9 176 3e-38 seq1665 120 2e-21 >seq9 Length=30819483 Score = 176 bits (194), Expect = 3e-38 Identities = 563/869 (65%), Gaps = 12/869 (1%) Strand=Plus/Minus Query 282018 AATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 282077 |||| | || ||||||| ||| |||| ||||| | | || || || || || || | Sbjct 28008057 AATCGGTACCCTCGAACAGAGAGTCAATCTCAATGCTGGCCTGGGTGGACGACGAGAGGG 28007998 Query 282078 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTA----AGGCTT-TTGCTGATTG 282132 ||| || || || || || || || | || | || | | |||| |||||| | Sbjct 28007997 TACGCTTTGCGCGCTCGCAGGCGGTGCGCAGACGACGCAGAGCACGCTTGTTGCTGGT-- 28007940 Query 282133 ATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATT 282192 || || | || | || | |||||| || | ||| | || || ||||| || Sbjct 28007939 ---CAGGTCCTTCTTGTGCTTGCGCTTGAACTCCTGCACAAAGTGGGTCACTAGACGGTT 28007883 Query 282193 ATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCC 282252 || ||||| ||||| || | | |||| || | ||||| | | || | ||| | || Sbjct 28007882 GTCGAAATCCTCACCACCAAGATGGGTATCACCGGCCGTAGATTTGACCTCGAAGATGCC 28007823 Query 282253 ATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTAC 282312 || || | |||| || | ||||| ||| || ||||||| ||| |||||||| || Sbjct 28007822 GTCATCGATCGACAGAATGGACACATCGAAGGTACCGCCACCCAGATCGAAAATAAGCAC 28007763 Query 282313 ATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTC 282372 || || | || || || || ||||| || | |||||| || || || || Sbjct 28007762 GTTGCGCTCACCAACAGCCTTCTTGTCCAGGCCATAGGCGATAGCAGCGGCTGTGGGCTC 28007703 Query 282373 ATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCT 282432 || || || | || ||||| | || ||||| | || ||||| || || || || | Sbjct 28007702 GTTGATGATACGCAGCACATTCAATCCGGCAATGGTACCGGCATCCTTGGTCGCCTGACG 28007643 Query 282433 TTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAAT 282492 || || ||||| || || || || ||||| || ||||||| || ||| || || | Sbjct 28007642 CTGCGAGTCGTTGAAGTAGGCTGGCACAGTGATGACGGCATTGGTCACTGTCTTGCCCAG 28007583 Query 282493 ATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGA 282552 || || || || | |||||||| | || | ||| || || || | || || || Sbjct 28007582 GTACGCCTCGGCGGTCTCCTTCATTTTGGTCAACACCATGGAGGAGATCTCCTCGGG-GA 28007524 Query 282553 ATATTG-CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAA 282611 | | | ||| |||| | || | || |||| | || || | | || | | Sbjct 28007523 AGAAGGTCTTCTTCTCATCCTTGTACGTAACCTCAATCTTGGGCTTGCCATCTACGCTGA 28007464 Query 282612 TAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTAC 282671 || | || ||||| | ||||| || || || ||| || | ||| | | || Sbjct 28007463 CCACATCGAAGGGCCAGTGCTTCATGTCAGACTGCACAGCAGAATCCTCAAACTTGCGAC 28007404 Query 282672 CAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGG 282731 |||| | || || ||||| || || || | |||||| || | || | |||| |||| Sbjct 28007403 CAATCAGACGCTTGGCATCGAAGATCGTTTGGGTTGGGTTCATCGCCACCTGATTCTTGG 28007344 Query 282732 CTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGAT 282791 | ||||| ||||||| | | || || || || || | |||||| ||||| || || |||| Sbjct 28007343 CGGCATCACCAATCAAACGCTCCGTGTCCGTGAAGGCAACATAGGATGGTGTCGTACGAT 28007284 Query 282792 TACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAA 282851 |||| || || || ||||| || || || || |||| || | ||||| |||||| Sbjct 28007283 TACCCTGGTCGTTGGCAATGATCTCGACCTTGCCATGCTGGAACACACCCACACAAGAGT 28007224 Query 282852 AAGTTGTTCCTAAATCAATACCAATAGCA 282880 | ||||| || ||||||||||||| |||| Sbjct 28007223 AGGTTGTGCCCAAATCAATACCAACAGCA 28007195 Score = 107 bits (118), Expect = 1e-17 Identities = 447/703 (64%), Gaps = 2/703 (0%) Strand=Plus/Plus Query 282179 GTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTT 282238 || || ||||| || || ||||| ||||| || | | |||| || | ||||| | | Sbjct 27747872 GTCACTAGACGGTTGTCGAAATCCTCACCACCAAGATGGGTATCACCGGCCGTAGATTTG 27747931 Query 282239 ACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATA 282298 || | ||| | ||||| | | || | || | ||||| ||| || ||||||| | Sbjct 27747932 ACCTTGAAGATGCCATCATTGATCGAAAGAATGGACACATCGAAGGTACCGCCACCCAGA 27747991 Query 282299 TCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCA 282358 || |||||||| || || || | || || || || ||||| || | ||| Sbjct 27747992 TCGAAAATAAGCACGTTGCGCTCACCAACAGCCTTCTTGTCCAGGCCATAGGCGATTGCA 27748051 Query 282359 GCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCT 282418 || || || || || || || || | || || || | ||| || || | || ||||| Sbjct 27748052 GCGGCCGTGGGCTCGTTGATGATACGCAGGACTTTCAAACCGGCGATGGTACCGGCATCC 27748111 Query 282419 TTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTT 282478 || || || || | || || ||||| || | || || |||| || || || | || Sbjct 27748112 TTGGTAGCCTGACGCTGCGAGTCGTTGAAGTGGGCTGGCACAGAGATGACAGCTTTGGTC 27748171 Query 282479 ACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAA 282538 || || || | || | || || | |||||||| | || | ||| | || Sbjct 27748172 ACCGTCTTGCCCAGGTACTCCTCGGCGGTCTCCTTCATTTTGGTCAACACCATGGCAGAG 27748231 Query 282539 ATTTGTTCTGGAGAATATTG-CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTT 282597 || | || || ||| | | ||| || | | || | || |||| | || || Sbjct 27748232 ATCTCCTC-GGCGAAGAAGGTCTTCTTCTCGTCCTTGTACGTAACCTCAATCTTGGGCTT 27748290 Query 282598 ATTACCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTC 282657 | ||| | | || | || ||||| || ||||| || | || ||| || Sbjct 27748291 GCCGTCTACACTGACCACATCGAAGGGCCAGTACTTCATGTCAGCCTGGACAGCAGAATC 27748350 Query 282658 ATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGC 282717 ||||| | | |||||| | || || | || || || | | | |||| || || | Sbjct 27748351 CTTAAACTTGCGACCAATCAGACGCTTCGATTCGAAGATCCTCTGGTTTGGGTTCACCGT 27748410 Query 282718 AGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGA 282777 | || | ||||| ||||| ||||||| | || || || || || | |||||| || Sbjct 27748411 CACCTGGTTCTTGGCGGCATCACCAATCAAGCGCTCCGTATCCGTGAAGGCAACATAGGA 27748470 Query 282778 TGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATAC 282837 || || || |||||||| || || || ||||| || || || || ||||| || | || Sbjct 27748471 TGATGTGGTACGATTACCCTGGTCGTTGGCAATGATCTCGACCTTGCCATTCTGGAACAC 27748530 Query 282838 ACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 282880 ||| ||||| | |||||| || |||||||||||||||||| Sbjct 27748531 ACCCACACAGCAGTGAGTTGTGCCCAAATCAATACCAATAGCA 27748573 >seq1665 Length=7720 Score = 120 bits (132), Expect = 2e-21 Identities = 125/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 637126 GTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGATCAACT 637185 || |||| |||||| || ||||| || || | |||||| |||| || ||| | || || Sbjct 6624 GTGGATTTTTCTTCACCTAATATAGCCAAGCAGATGCATGTTGGTCACTTACGCTCTACA 6683 Query 637186 ATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACACGATGTTTATCGTATT 637245 |||||||| ||||| |||| | || | ||| | | |||||| || |||||| Sbjct 6684 ATTATTGGCGAATCAGTTTGCCGCTTACTGGAATTTTTGCAACACGACGTAATTCGTATA 6743 Query 637246 AATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGC 637289 |||||| | |||||||||||||| |||||||||||||||||||| Sbjct 6744 AATCATCTTGGTGATTGGGGAACACAATTCGGTATGTTAATTGC 6787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740395231242540