Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq10 95.1 2e-14 >seq10 Length=19787792 Score = 95.1 bits (104), Expect = 2e-14 Identities = 165/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 183043 CAGATGATGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTACTGGGCTAAAAAGATA 183102 ||| || || | || || || ||||| | ||| | || ||||||||||| || || ||| Sbjct 8707780 CAGCTGGTGCGGGAGGGCAAGATGCACGGATTTCTGCGCATGTACTGGGCCAAGAAAATA 8707721 Query 183103 CTTGAATGGACAAGAACTCCGGAAGATGCTTTGAGTTATAGTATCTATATGAACAATAAG 183162 || || ||||| || ||||| | || || || ||| ||||| | ||| Sbjct 8707720 CTCGAGTGGACGGCCACGCCGGAGCAGGCGCTGGAGTACGCGATCCTGCTGAACGACAAG 8707661 Query 183163 TACGAACTAGACGGTACGGATCCTAACGGATACGTAGGTTGTATGTGGTCTATTTGCGGA 183222 ||| |||||||| ||||| || || || || || || |||||||||||| | || Sbjct 8707660 TACAGCCTAGACGGGCGCGATCCCAATGGCTATGTGGGCTGCATGTGGTCTATTGGGGGC 8707601 Query 183223 TTACACGATAGAGCGTGGAAAGAAAGACCTATATTTGGAAAGATAAGATATATGAATTAT 183282 ||||||||| | ||||| || | | ||||| |||||||| | || ||||| ||| Sbjct 8707600 ATACACGATATGGGCTGGAAGGAGCGTGCGATATTCGGAAAGATTCGCTACATGAACTAT 8707541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903357108254400