Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017
65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq6 113 3e-20
seq4631 100 2e-16
seq3 98.7 7e-16
seq12 82.4 5e-11
>seq6
Length=9197557
Score = 113 bits (124), Expect = 3e-20
Identities = 164/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | | ||| | ||||||||| ||||| ||| || || |||||||| || ||
Sbjct 544134 ACCACCGCGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGA 544193
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| ||||| | || |||| ||| || ||||| || || | ||||||||| ||| | ||
Sbjct 544194 AAGAGTGCGGCCATCCTCCAGTTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGG 544253
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700
| || || ||||| || || |||| | | ||| ||||||| || ||||
Sbjct 544254 GATTCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGTTCTCAATGGTGTCGGATGGCTCCA 544312
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| || | ||||| ||||| || || || ||||| ||||||||||||||
Sbjct 544313 CCTCCAGGGTGATGGTTTTTCCAGTCAAGGTTTTCACAAAGATCTGCAT 544361
Score = 93.3 bits (102), Expect = 3e-14
Identities = 160/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | | ||| | ||||||||| ||||| ||| || || |||||||| || ||
Sbjct 543450 ACCACCGCGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGA 543509
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| ||||| | || |||| || || ||||| || || | ||||||||| || | ||
Sbjct 543510 AAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGG 543569
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700
| || || ||||| || || |||| | | ||| ||||||| || ||||
Sbjct 543570 GATTCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGTTCTCAATGGTGTCGGATGGCTCCA 543628
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| || | ||||| ||||| || || | || || || ||||||||||||
Sbjct 543629 CCTCCAGGGTGATGGTTTTTCCAGTCAGAGTCTTCACGAAGATCTGCATA 543678
>seq4631
Length=7852
Score = 100 bits (110), Expect = 2e-16
Identities = 142/197 (72%), Gaps = 2/197 (1%)
Strand=Plus/Minus
Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617
||| || || ||||| ||||| || ||||| || | || |||||||| || || || ||
Sbjct 680 CTCCTTCTGAATGTTATAATCAGACAGTGTTCGGCCATCTTCCAATTGCTTGCCAGCGAA 621
Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677
||||||||||| |||||| | || | ||||||||||| || || | || ||||
Sbjct 620 GATCAAACGCTGTTGATCTGGAGGAATTCCTTCTTTGTCCTGGATCTT-GGCTTTGACAT 562
Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736
|| | ||| || | ||| || |||| || || || || || |||| || ||||
Sbjct 561 TTTCGATGGTATCCGACGGTTCGACCTCAAGAGTTATGGTCTTGCCCGTTAGGGTCTTTA 502
Query 33737 CAAAGATCTGCATAGTT 33753
||||||||||||| |||
Sbjct 501 CAAAGATCTGCATGGTT 485
>seq3
Length=12541198
Score = 98.7 bits (108), Expect = 7e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||| | || || | ||||||||| | ||| ||| || || ||||||||||||||
Sbjct 3174567 CCACCGCGCAGGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGAC 3174508
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
| || ||| |||| |||| || || ||||| || |||||||||||||||||| | ||
Sbjct 3174507 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 3174448
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| || || ||||| || || | | |||| || | |||||| | || ||
Sbjct 3174447 ATGCCCTCCTTGTCCTGGATCTT-AGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGAC 3174389
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | ||||| || || || || | || || ||||||||||||||
Sbjct 3174388 CTCGAGGGTGATGGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 3174341
Score = 98.7 bits (108), Expect = 7e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||| | || || | ||||||||| | ||| ||| || || ||||||||||||||
Sbjct 3174795 CCACCGCGCAGGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGAC 3174736
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
| || ||| |||| |||| || || ||||| || |||||||||||||||||| | ||
Sbjct 3174735 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 3174676
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| || || ||||| || || | | |||| || | |||||| | || ||
Sbjct 3174675 ATGCCCTCCTTGTCCTGGATCTT-AGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGAC 3174617
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | ||||| || || || || | || || ||||||||||||||
Sbjct 3174616 CTCGAGGGTGATGGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 3174569
Score = 96.9 bits (106), Expect = 2e-15
Identities = 153/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593
||| || ||||| || | |||| ||| || || |||||||||||||| | || ||| |
Sbjct 3175924 ACGCAATACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAATCGGACAAAGTACGTCC 3175865
Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653
||| |||| || || ||||| || |||||||||||||||||| | || | || || ||
Sbjct 3175864 GTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTT 3175805
Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712
||| || || | | |||| || | |||||| | || || || | ||||
Sbjct 3175804 GTCCTGGATCTT-AGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGA 3175746
Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| || || || || | || || ||||||||||||||
Sbjct 3175745 TGGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 3175709
Score = 93.3 bits (102), Expect = 3e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||| | || || | ||||||||| | ||| ||| || || ||||||||||||||
Sbjct 3174111 CCACCGCGCAGGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGAC 3174052
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
| || ||| |||| |||| || || ||||| || |||||||||||||||||| | ||
Sbjct 3174051 AAGGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 3173992
Query 33643 ACACCTTCTTTGTC 33656
| || || |||||
Sbjct 3173991 ATGCCCTCCTTGTC 3173978
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||| | || || | ||||||||| | ||| ||| || || |||||||| |||||
Sbjct 3174339 CCACCGCGCAGGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3174280
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
| || ||| |||| |||| || || ||||| || |||||||||||||||||| | ||
Sbjct 3174279 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 3174220
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| || || ||||| || || | | |||| || | |||||| | || ||
Sbjct 3174219 ATGCCCTCCTTGTCCTGGATCTT-AGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGAC 3174161
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | ||||| || || || || | || || ||||||||||||||
Sbjct 3174160 CTCGAGGGTGATAGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 3174113
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||| | || || | ||||||||| | ||| ||| || || |||||||| |||||
Sbjct 3175023 CCACCGCGCAGGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3174964
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
| || ||| |||| |||| || || ||||| || |||||||||||||||||| | ||
Sbjct 3174963 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 3174904
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| || || ||||| || || | | |||| || | |||||| | || ||
Sbjct 3174903 ATGCCCTCCTTGTCCTGGATCTT-AGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGAC 3174845
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | ||||| || || || || | || || ||||||||||||||
Sbjct 3174844 CTCGAGGGTGATGGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 3174797
Score = 93.3 bits (102), Expect = 3e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||| | || || | ||||||||| | ||| ||| || || ||||||||||||||
Sbjct 3175479 CCACCGCGCAGGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGAC 3175420
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
| || ||| |||| |||| || || ||||| || |||||||||||||||||| | ||
Sbjct 3175419 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 3175360
Query 33643 ACACCTTCTTTGTC 33656
| || || |||||
Sbjct 3175359 ATGCCCTCCTTGTC 3175346
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||| | || || | ||||||||| | ||| ||| || || |||||||| |||||
Sbjct 3175707 CCACCGCGCAGGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3175648
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
| || ||| |||| |||| || || ||||| || |||||||||||||||||| | ||
Sbjct 3175647 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 3175588
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| || || ||||| || || | | |||| || | |||||| | || ||
Sbjct 3175587 ATGCCCTCCTTGTCCTGGATCTT-AGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGAC 3175529
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | ||||| || || || || | || || ||||||||||||||
Sbjct 3175528 CTCGAGGGTGATGGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 3175481
Score = 86.0 bits (94), Expect = 4e-12
Identities = 147/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599
|||||| || || || ||| || || |||||||| ||||| | || ||| |||| ||
Sbjct 3175234 CACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCCTC 3175175
Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659
|| || || ||||| || |||||||||||||||||| | || | || || |||||
Sbjct 3175174 CAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTG 3175115
Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718
|| || | | |||| || | |||||| | || || || | ||||| || |
Sbjct 3175114 GATCTT-AGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGTCT 3175056
Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| || || | || || ||||||||||||||
Sbjct 3175055 TGCCAGTCAGAGTCTTGACAAAGATCTGCAT 3175025
>seq12
Length=1235759
Score = 82.4 bits (90), Expect = 5e-11
Identities = 99/135 (73%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | || || | |||||| || || || ||| || || |||||||| |||||
Sbjct 219395 ACCACCGCGCAGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 219336
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| ||||| | || |||| || || ||||| || |||| ||||||||||||| | ||
Sbjct 219335 CAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 219276
Query 33642 CACACCTTCTTTGTC 33656
| || || |||||
Sbjct 219275 AATGCCCTCCTTGTC 219261
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328684810876800
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