Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq6 113 3e-20 seq4631 100 2e-16 seq3 98.7 7e-16 seq12 82.4 5e-11 >seq6 Length=9197557 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||||||| ||||| ||| || || |||||||| || || Sbjct 544134 ACCACCGCGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGA 544193 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || |||| ||| || ||||| || || | ||||||||| ||| | || Sbjct 544194 AAGAGTGCGGCCATCCTCCAGTTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGG 544253 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | || || ||||| || || |||| | | ||| ||||||| || |||| Sbjct 544254 GATTCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGTTCTCAATGGTGTCGGATGGCTCCA 544312 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| ||||| || || || ||||| |||||||||||||| Sbjct 544313 CCTCCAGGGTGATGGTTTTTCCAGTCAAGGTTTTCACAAAGATCTGCAT 544361 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||||||| ||||| ||| || || |||||||| || || Sbjct 543450 ACCACCGCGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGA 543509 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || |||| || || ||||| || || | ||||||||| || | || Sbjct 543510 AAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGG 543569 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | || || ||||| || || |||| | | ||| ||||||| || |||| Sbjct 543570 GATTCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGTTCTCAATGGTGTCGGATGGCTCCA 543628 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| ||||| || || | || || || |||||||||||| Sbjct 543629 CCTCCAGGGTGATGGTTTTTCCAGTCAGAGTCTTCACGAAGATCTGCATA 543678 >seq4631 Length=7852 Score = 100 bits (110), Expect = 2e-16 Identities = 142/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || ||||| ||||| || ||||| || | || |||||||| || || || || Sbjct 680 CTCCTTCTGAATGTTATAATCAGACAGTGTTCGGCCATCTTCCAATTGCTTGCCAGCGAA 621 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 ||||||||||| |||||| | || | ||||||||||| || || | || |||| Sbjct 620 GATCAAACGCTGTTGATCTGGAGGAATTCCTTCTTTGTCCTGGATCTT-GGCTTTGACAT 562 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 || | ||| || | ||| || |||| || || || || || |||| || |||| Sbjct 561 TTTCGATGGTATCCGACGGTTCGACCTCAAGAGTTATGGTCTTGCCCGTTAGGGTCTTTA 502 Query 33737 CAAAGATCTGCATAGTT 33753 ||||||||||||| ||| Sbjct 501 CAAAGATCTGCATGGTT 485 >seq3 Length=12541198 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || || | ||||||||| | ||| ||| || || |||||||||||||| Sbjct 3174567 CCACCGCGCAGGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGAC 3174508 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || ||| |||| |||| || || ||||| || |||||||||||||||||| | || Sbjct 3174507 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 3174448 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || | | |||| || | |||||| | || || Sbjct 3174447 ATGCCCTCCTTGTCCTGGATCTT-AGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGAC 3174389 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || |||||||||||||| Sbjct 3174388 CTCGAGGGTGATGGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 3174341 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || || | ||||||||| | ||| ||| || || |||||||||||||| Sbjct 3174795 CCACCGCGCAGGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGAC 3174736 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || ||| |||| |||| || || ||||| || |||||||||||||||||| | || Sbjct 3174735 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 3174676 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || | | |||| || | |||||| | || || Sbjct 3174675 ATGCCCTCCTTGTCCTGGATCTT-AGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGAC 3174617 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || |||||||||||||| Sbjct 3174616 CTCGAGGGTGATGGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 3174569 Score = 96.9 bits (106), Expect = 2e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| || ||||| || | |||| ||| || || |||||||||||||| | || ||| | Sbjct 3175924 ACGCAATACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAATCGGACAAAGTACGTCC 3175865 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 ||| |||| || || ||||| || |||||||||||||||||| | || | || || || Sbjct 3175864 GTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTT 3175805 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| || || | | |||| || | |||||| | || || || | |||| Sbjct 3175804 GTCCTGGATCTT-AGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGA 3175746 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || || || | || || |||||||||||||| Sbjct 3175745 TGGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 3175709 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || || | ||||||||| | ||| ||| || || |||||||||||||| Sbjct 3174111 CCACCGCGCAGGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGAC 3174052 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || ||| |||| |||| || || ||||| || |||||||||||||||||| | || Sbjct 3174051 AAGGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 3173992 Query 33643 ACACCTTCTTTGTC 33656 | || || ||||| Sbjct 3173991 ATGCCCTCCTTGTC 3173978 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || || | ||||||||| | ||| ||| || || |||||||| ||||| Sbjct 3174339 CCACCGCGCAGGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3174280 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || ||| |||| |||| || || ||||| || |||||||||||||||||| | || Sbjct 3174279 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 3174220 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || | | |||| || | |||||| | || || Sbjct 3174219 ATGCCCTCCTTGTCCTGGATCTT-AGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGAC 3174161 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || |||||||||||||| Sbjct 3174160 CTCGAGGGTGATAGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 3174113 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || || | ||||||||| | ||| ||| || || |||||||| ||||| Sbjct 3175023 CCACCGCGCAGGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3174964 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || ||| |||| |||| || || ||||| || |||||||||||||||||| | || Sbjct 3174963 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 3174904 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || | | |||| || | |||||| | || || Sbjct 3174903 ATGCCCTCCTTGTCCTGGATCTT-AGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGAC 3174845 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || |||||||||||||| Sbjct 3174844 CTCGAGGGTGATGGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 3174797 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || || | ||||||||| | ||| ||| || || |||||||||||||| Sbjct 3175479 CCACCGCGCAGGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGAC 3175420 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || ||| |||| |||| || || ||||| || |||||||||||||||||| | || Sbjct 3175419 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 3175360 Query 33643 ACACCTTCTTTGTC 33656 | || || ||||| Sbjct 3175359 ATGCCCTCCTTGTC 3175346 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || || | ||||||||| | ||| ||| || || |||||||| ||||| Sbjct 3175707 CCACCGCGCAGGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3175648 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || ||| |||| |||| || || ||||| || |||||||||||||||||| | || Sbjct 3175647 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 3175588 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || | | |||| || | |||||| | || || Sbjct 3175587 ATGCCCTCCTTGTCCTGGATCTT-AGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGAC 3175529 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || |||||||||||||| Sbjct 3175528 CTCGAGGGTGATGGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 3175481 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 |||||| || || || ||| || || |||||||| ||||| | || ||| |||| || Sbjct 3175234 CACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCCTC 3175175 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || || || ||||| || |||||||||||||||||| | || | || || ||||| Sbjct 3175174 CAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTG 3175115 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || || | | |||| || | |||||| | || || || | ||||| || | Sbjct 3175114 GATCTT-AGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGTCT 3175056 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | || || |||||||||||||| Sbjct 3175055 TGCCAGTCAGAGTCTTGACAAAGATCTGCAT 3175025 >seq12 Length=1235759 Score = 82.4 bits (90), Expect = 5e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || || | |||||| || || || ||| || || |||||||| ||||| Sbjct 219395 ACCACCGCGCAGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 219336 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || |||| || || ||||| || |||| ||||||||||||| | || Sbjct 219335 CAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 219276 Query 33642 CACACCTTCTTTGTC 33656 | || || ||||| Sbjct 219275 AATGCCCTCCTTGTC 219261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328684810876800