Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017
65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq12 98.7 2e-15
seq3 96.9 8e-15
seq6 91.5 3e-13
>seq12
Length=1235759
Score = 98.7 bits (108), Expect = 2e-15
Identities = 135/189 (71%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
||||| ||||| || || || ||||| ||||| || || |||||||| ||||
Sbjct 219183 AAAACTCTCACTGGCAAGACCATCACCTTGGAGGTCGAGCCCTCTGACACCATCGAGAAT 219242
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||| ||||| || || || || || ||| || || || | || ||||||
Sbjct 219243 GTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGCAGCGTCTGATCTTC 219302
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
||||| |||||| |||| ||||| | ||| || |||| |||||| ||||||| |||||
Sbjct 219303 GCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCG 219362
Query 206365 ACTCTTCAC 206373
|| || |||
Sbjct 219363 ACCCTGCAC 219371
>seq3
Length=12541198
Score = 96.9 bits (106), Expect = 8e-15
Identities = 152/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| ||| || || || || || || ||||| | || || || || |||
Sbjct 3175712 CAGATCTTTGTCAAGACTCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCTCGGAC 3175771
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| |||| || ||| ||||| || || || || || ||| || || ||
Sbjct 3175772 ACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGCAG 3175831
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
| | ||||||||||| |||||| |||| || ||| | |||||| ||||||||||| ||
Sbjct 3175832 CGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGATTACAACATC 3175891
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
||||| ||||| ||| | ||| | || ||| | |||||
Sbjct 3175892 CAGAAGGAGTCCACTTTGCACTTGGTATTGCGTCTTCG 3175929
Score = 84.2 bits (92), Expect = 5e-11
Identities = 135/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| ||| || || || || || || ||||| | || || || || |||
Sbjct 3174344 CAGATCTTTGTCAAGACTCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCTCGGAC 3174403
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| |||| || ||| ||||| || || || || || ||| || || ||
Sbjct 3174404 ACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGCAG 3174463
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
| | ||||||||||| |||||| |||| || ||| | |||||| ||||||||||| ||
Sbjct 3174464 CGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGATTACAACATC 3174523
Query 206353 CAGAAAGAGTCTAC 206366
||||| ||||| ||
Sbjct 3174524 CAGAAGGAGTCCAC 3174537
Score = 84.2 bits (92), Expect = 5e-11
Identities = 135/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| ||| || || || || || || ||||| | || || || || |||
Sbjct 3174572 CAGATCTTTGTCAAGACTCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCTCGGAC 3174631
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| |||| || ||| ||||| || || || || || ||| || || ||
Sbjct 3174632 ACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGCAG 3174691
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
| | ||||||||||| |||||| |||| || ||| | |||||| ||||||||||| ||
Sbjct 3174692 CGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGATTACAACATC 3174751
Query 206353 CAGAAAGAGTCTAC 206366
||||| ||||| ||
Sbjct 3174752 CAGAAGGAGTCCAC 3174765
Score = 84.2 bits (92), Expect = 5e-11
Identities = 139/201 (69%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| ||| || || || || || || ||||| | || || || || |||
Sbjct 3175028 CAGATCTTTGTCAAGACTCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCTCGGAC 3175087
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| |||| || ||| ||||| || || || || || ||| || || ||
Sbjct 3175088 ACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGCAG 3175147
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
| | ||||||||||| |||||| |||| || ||| | |||||| |||| |||||| ||
Sbjct 3175148 CGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGACTACAACATC 3175207
Query 206353 CAGAAAGAGTCTACTCTTCAC 206373
||||| ||||| || || |||
Sbjct 3175208 CAGAAGGAGTCGACCCTCCAC 3175228
>seq6
Length=9197557
Score = 91.5 bits (100), Expect = 3e-13
Identities = 133/188 (71%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
||||| | || |||||||| ||||| |||| ||||| || ||||| | ||
Sbjct 543206 AAAACCTTGACCGGAAAAACCATCACCCTGGAGGTGGAGCCATCCGACACCATTGAGAAC 543147
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||| ||||| || || || || ||||| || ||| || | || ||||||
Sbjct 543146 GTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGACCAGCAGCGTCTCATCTTC 543087
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
|||||||||||| |||| ||||| | ||| | | || |||||| ||||||| |||||
Sbjct 543086 GCCGGAAAGCAGCTGGAGGATGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCG 543027
Query 206365 ACTCTTCA 206372
||||| ||
Sbjct 543026 ACTCTGCA 543019
Score = 91.5 bits (100), Expect = 3e-13
Identities = 133/188 (71%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
||||| | || |||||||| ||||| |||| ||||| || ||||| | ||
Sbjct 544118 AAAACCTTGACCGGAAAAACCATCACCCTGGAGGTGGAGCCATCCGACACCATTGAGAAC 544059
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|||||| ||||| || || || || ||||| || ||| || | || ||||||
Sbjct 544058 GTAAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCAGACCAGCAGCGTCTCATCTTC 543999
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
||||| |||||| |||| ||||| | ||| | | || |||||| ||||||| |||||
Sbjct 543998 GCCGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCTGACTACAACATCCAGAAGGAGTCG 543939
Query 206365 ACTCTTCA 206372
||||| ||
Sbjct 543938 ACTCTCCA 543931
Score = 87.8 bits (96), Expect = 4e-12
Identities = 132/188 (70%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
||||| | || |||||||| ||||| |||| ||||| || ||||| | ||
Sbjct 542750 AAAACCTTGACCGGAAAAACCATCACCCTGGAGGTGGAGCCATCCGACACCATTGAGAAC 542691
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||| ||||| || || || || ||||| || ||| || | || ||||||
Sbjct 542690 GTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCTGACCAGCAGCGTCTCATCTTC 542631
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
||||| |||||| |||| ||||| | ||| | | || |||||| ||||||| |||||
Sbjct 542630 GCCGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCG 542571
Query 206365 ACTCTTCA 206372
||||| ||
Sbjct 542570 ACTCTCCA 542563
Score = 87.8 bits (96), Expect = 4e-12
Identities = 132/188 (70%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
||||| | || |||||||| ||||| |||| ||||| || ||||| | ||
Sbjct 542978 AAAACCTTGACCGGAAAAACCATCACCCTGGAGGTGGAGCCATCCGACACCATTGAGAAC 542919
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||| ||||| || || || || ||||| || ||| || | || ||||||
Sbjct 542918 GTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGACCAGCAGCGTCTCATCTTC 542859
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
||||| |||||| |||| ||||| | ||| | | || |||||| ||||||| |||||
Sbjct 542858 GCCGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCG 542799
Query 206365 ACTCTTCA 206372
||||| ||
Sbjct 542798 ACTCTGCA 542791
Score = 87.8 bits (96), Expect = 4e-12
Identities = 132/188 (70%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
||||| | || |||||||| ||||| |||| ||||| || ||||| | ||
Sbjct 543434 AAAACCTTGACCGGAAAAACCATCACCCTGGAGGTGGAGCCATCCGACACCATTGAGAAC 543375
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||| ||||| || || || || ||||| || ||| || | || ||||||
Sbjct 543374 GTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCTGACCAGCAGCGTCTCATCTTC 543315
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
||||| |||||| |||| ||||| | ||| | | || |||||| ||||||| |||||
Sbjct 543314 GCCGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCG 543255
Query 206365 ACTCTTCA 206372
||||| ||
Sbjct 543254 ACTCTGCA 543247
Score = 87.8 bits (96), Expect = 4e-12
Identities = 132/188 (70%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|| || || || |||||||| ||||| |||| ||||| || ||||| | ||
Sbjct 543662 AAGACTCTGACTGGAAAAACCATCACCCTGGAGGTGGAGCCATCCGACACCATTGAGAAC 543603
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||| ||||| || || || || ||||| || ||| || | || ||||||
Sbjct 543602 GTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCTGACCAGCAGCGTCTCATCTTC 543543
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
||||| |||||| |||| ||||| | ||| | | || |||||| ||||||| |||||
Sbjct 543542 GCCGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCG 543483
Query 206365 ACTCTTCA 206372
||||| ||
Sbjct 543482 ACTCTCCA 543475
Score = 87.8 bits (96), Expect = 4e-12
Identities = 132/188 (70%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
||||| | || |||||||| ||||| |||| ||||| || ||||| | ||
Sbjct 543890 AAAACCTTGACCGGAAAAACCATCACCCTGGAGGTGGAGCCATCCGACACCATTGAGAAC 543831
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||| ||||| || || || || ||||| || ||| || | || ||||||
Sbjct 543830 GTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCTGACCAGCAGCGTCTCATCTTC 543771
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
||||| |||||| |||| ||||| | ||| | | || |||||| ||||||| |||||
Sbjct 543770 GCCGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCG 543711
Query 206365 ACTCTTCA 206372
||||| ||
Sbjct 543710 ACTCTCCA 543703
Score = 87.8 bits (96), Expect = 4e-12
Identities = 145/209 (69%), Gaps = 3/209 (1%)
Strand=Plus/Minus
Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223
|||||| ||||| ||| ||||| | || |||||||| ||||| |||| |||||
Sbjct 544364 AAAATG---CAGATCTTTGTGAAAACCTTGACTGGAAAAACCATCACCCTGGAGGTGGAG 544308
Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283
|| ||||| | || || ||| ||||| || || || || ||||| ||
Sbjct 544307 CCATCCGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCA 544248
Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343
||| || | || ||||||||||| ||||| |||| ||||| | ||| | | ||
Sbjct 544247 GACCAGCAGCGTCTCATCTTCGCCGGCAAGCAACTGGAGGATGGCCGCACTCTTTCGGAC 544188
Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCA 206372
|||||| ||||||| ||||| ||||| ||
Sbjct 544187 TACAACATCCAGAAGGAGTCGACTCTCCA 544159
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181748269441590
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |