Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq12 98.7 2e-15 seq3 96.9 8e-15 seq6 91.5 3e-13 >seq12 Length=1235759 Score = 98.7 bits (108), Expect = 2e-15 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || || || ||||| ||||| || || |||||||| |||| Sbjct 219183 AAAACTCTCACTGGCAAGACCATCACCTTGGAGGTCGAGCCCTCTGACACCATCGAGAAT 219242 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || ||| || || || | || |||||| Sbjct 219243 GTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGCAGCGTCTGATCTTC 219302 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| ||||| | ||| || |||| |||||| ||||||| ||||| Sbjct 219303 GCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCG 219362 Query 206365 ACTCTTCAC 206373 || || ||| Sbjct 219363 ACCCTGCAC 219371 >seq3 Length=12541198 Score = 96.9 bits (106), Expect = 8e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || || || || || || ||||| | || || || || ||| Sbjct 3175712 CAGATCTTTGTCAAGACTCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCTCGGAC 3175771 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || || ||| || || || Sbjct 3175772 ACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGCAG 3175831 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||||||||| |||||| |||| || ||| | |||||| ||||||||||| || Sbjct 3175832 CGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGATTACAACATC 3175891 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| ||||| ||| | ||| | || ||| | ||||| Sbjct 3175892 CAGAAGGAGTCCACTTTGCACTTGGTATTGCGTCTTCG 3175929 Score = 84.2 bits (92), Expect = 5e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || || || || || || ||||| | || || || || ||| Sbjct 3174344 CAGATCTTTGTCAAGACTCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCTCGGAC 3174403 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || || ||| || || || Sbjct 3174404 ACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGCAG 3174463 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||||||||| |||||| |||| || ||| | |||||| ||||||||||| || Sbjct 3174464 CGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGATTACAACATC 3174523 Query 206353 CAGAAAGAGTCTAC 206366 ||||| ||||| || Sbjct 3174524 CAGAAGGAGTCCAC 3174537 Score = 84.2 bits (92), Expect = 5e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || || || || || || ||||| | || || || || ||| Sbjct 3174572 CAGATCTTTGTCAAGACTCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCTCGGAC 3174631 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || || ||| || || || Sbjct 3174632 ACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGCAG 3174691 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||||||||| |||||| |||| || ||| | |||||| ||||||||||| || Sbjct 3174692 CGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGATTACAACATC 3174751 Query 206353 CAGAAAGAGTCTAC 206366 ||||| ||||| || Sbjct 3174752 CAGAAGGAGTCCAC 3174765 Score = 84.2 bits (92), Expect = 5e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || || || || || || ||||| | || || || || ||| Sbjct 3175028 CAGATCTTTGTCAAGACTCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCTCGGAC 3175087 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || || ||| || || || Sbjct 3175088 ACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGCAG 3175147 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||||||||| |||||| |||| || ||| | |||||| |||| |||||| || Sbjct 3175148 CGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGACTACAACATC 3175207 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||| ||||| || || ||| Sbjct 3175208 CAGAAGGAGTCGACCCTCCAC 3175228 >seq6 Length=9197557 Score = 91.5 bits (100), Expect = 3e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || |||||||| ||||| |||| ||||| || ||||| | || Sbjct 543206 AAAACCTTGACCGGAAAAACCATCACCCTGGAGGTGGAGCCATCCGACACCATTGAGAAC 543147 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || ||||| || ||| || | || |||||| Sbjct 543146 GTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGACCAGCAGCGTCTCATCTTC 543087 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||||||| |||| ||||| | ||| | | || |||||| ||||||| ||||| Sbjct 543086 GCCGGAAAGCAGCTGGAGGATGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCG 543027 Query 206365 ACTCTTCA 206372 ||||| || Sbjct 543026 ACTCTGCA 543019 Score = 91.5 bits (100), Expect = 3e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || |||||||| ||||| |||| ||||| || ||||| | || Sbjct 544118 AAAACCTTGACCGGAAAAACCATCACCCTGGAGGTGGAGCCATCCGACACCATTGAGAAC 544059 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || || ||||| || ||| || | || |||||| Sbjct 544058 GTAAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCAGACCAGCAGCGTCTCATCTTC 543999 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| ||||| | ||| | | || |||||| ||||||| ||||| Sbjct 543998 GCCGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCTGACTACAACATCCAGAAGGAGTCG 543939 Query 206365 ACTCTTCA 206372 ||||| || Sbjct 543938 ACTCTCCA 543931 Score = 87.8 bits (96), Expect = 4e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || |||||||| ||||| |||| ||||| || ||||| | || Sbjct 542750 AAAACCTTGACCGGAAAAACCATCACCCTGGAGGTGGAGCCATCCGACACCATTGAGAAC 542691 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || ||||| || ||| || | || |||||| Sbjct 542690 GTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCTGACCAGCAGCGTCTCATCTTC 542631 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| ||||| | ||| | | || |||||| ||||||| ||||| Sbjct 542630 GCCGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCG 542571 Query 206365 ACTCTTCA 206372 ||||| || Sbjct 542570 ACTCTCCA 542563 Score = 87.8 bits (96), Expect = 4e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || |||||||| ||||| |||| ||||| || ||||| | || Sbjct 542978 AAAACCTTGACCGGAAAAACCATCACCCTGGAGGTGGAGCCATCCGACACCATTGAGAAC 542919 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || ||||| || ||| || | || |||||| Sbjct 542918 GTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGACCAGCAGCGTCTCATCTTC 542859 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| ||||| | ||| | | || |||||| ||||||| ||||| Sbjct 542858 GCCGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCG 542799 Query 206365 ACTCTTCA 206372 ||||| || Sbjct 542798 ACTCTGCA 542791 Score = 87.8 bits (96), Expect = 4e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || |||||||| ||||| |||| ||||| || ||||| | || Sbjct 543434 AAAACCTTGACCGGAAAAACCATCACCCTGGAGGTGGAGCCATCCGACACCATTGAGAAC 543375 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || ||||| || ||| || | || |||||| Sbjct 543374 GTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCTGACCAGCAGCGTCTCATCTTC 543315 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| ||||| | ||| | | || |||||| ||||||| ||||| Sbjct 543314 GCCGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCG 543255 Query 206365 ACTCTTCA 206372 ||||| || Sbjct 543254 ACTCTGCA 543247 Score = 87.8 bits (96), Expect = 4e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || |||||||| ||||| |||| ||||| || ||||| | || Sbjct 543662 AAGACTCTGACTGGAAAAACCATCACCCTGGAGGTGGAGCCATCCGACACCATTGAGAAC 543603 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || ||||| || ||| || | || |||||| Sbjct 543602 GTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCTGACCAGCAGCGTCTCATCTTC 543543 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| ||||| | ||| | | || |||||| ||||||| ||||| Sbjct 543542 GCCGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCG 543483 Query 206365 ACTCTTCA 206372 ||||| || Sbjct 543482 ACTCTCCA 543475 Score = 87.8 bits (96), Expect = 4e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || |||||||| ||||| |||| ||||| || ||||| | || Sbjct 543890 AAAACCTTGACCGGAAAAACCATCACCCTGGAGGTGGAGCCATCCGACACCATTGAGAAC 543831 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || ||||| || ||| || | || |||||| Sbjct 543830 GTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCTGACCAGCAGCGTCTCATCTTC 543771 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| ||||| | ||| | | || |||||| ||||||| ||||| Sbjct 543770 GCCGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCG 543711 Query 206365 ACTCTTCA 206372 ||||| || Sbjct 543710 ACTCTCCA 543703 Score = 87.8 bits (96), Expect = 4e-12 Identities = 145/209 (69%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| ||||| ||| ||||| | || |||||||| ||||| |||| ||||| Sbjct 544364 AAAATG---CAGATCTTTGTGAAAACCTTGACTGGAAAAACCATCACCCTGGAGGTGGAG 544308 Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 || ||||| | || || ||| ||||| || || || || ||||| || Sbjct 544307 CCATCCGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCA 544248 Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343 ||| || | || ||||||||||| ||||| |||| ||||| | ||| | | || Sbjct 544247 GACCAGCAGCGTCTCATCTTCGCCGGCAAGCAACTGGAGGATGGCCGCACTCTTTCGGAC 544188 Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCA 206372 |||||| ||||||| ||||| ||||| || Sbjct 544187 TACAACATCCAGAAGGAGTCGACTCTCCA 544159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181748269441590