Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017
65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq7 125 7e-24
seq3 91.5 1e-13
seq12 84.2 2e-11
seq6 82.4 7e-11
>seq7
Length=13333775
Score = 125 bits (138), Expect = 7e-24
Identities = 241/349 (69%), Gaps = 10/349 (3%)
Strand=Plus/Minus
Query 51541 CAATACCGATGATGCCGCAGCCGAGACGTCCGCCCGAGTTGCCCGTGGTCTTGCTCAGCG 51600
|||| || |||| |||||||| | ||| |||| | ||||| ||||||||||| |||
Sbjct 10666532 CAATGCCAATGACACCGCAGCCAATACGGGCGCCGGCATTGCCGGTGGTCTTGCTTAGCT 10666473
Query 51601 GATGGTCGGTGAGGCCGAGATCGTC-GCGCTTTGCGTGAACCACCAGACTGCGGCCAACG 51659
|| | ||| | || || ||| | |||||||| |||| |||| || | |
Sbjct 10666472 CGTGACCACCCTTGCCCAAGTCATCAGCG-TCGGCGTGAACGACCACGGTGCGTCCTATG 10666414
Query 51660 ACGCTATTTTCGCCGAAAAGCGTCATCACGTTGTCGATCTTGTCCACTTCGGTGAGGGCG 51719
| ||||| | ||||| ||||| ||| |||| | || || | ||| || |
Sbjct 10666413 ATGCTATCGGCACCGAACAGCGTGATCTTCGAGTCGGTGATGCTGACGGCCGTGGGGCTG 10666354
Query 51720 TTGGACACTTTAGCCTCGACATTGCCCAAGTCGCCGACGTGGCGCATCGCCGCGTTCGGA 51779
| || |||| || |||||||||||||| | |||||| || | || | ||
Sbjct 10666353 TCACCGGCT---GCCTGGATGTTGCCCAAGTCGCCCAAGTGGCGGTTCTCGTCGGTGGGG 10666297
Query 51780 GCGCCGTGGTCGCTG--CCGGTGGGGTTGAAGTGTTCGCCCGCCGACGTGCAGCCGTTGC 51837
|| ||||| || || |||| ||||| ||||| ||| | |||| |||||||||||
Sbjct 10666296 GCACCGTGCTCCTTGTTCCGG--GGGTTAAAGTGGGGGCCGGACGACATGCAGCCGTTGG 10666239
Query 51838 TGGTGTCGCCGAATTCGTGCACGTGGAATCCGTGCAGGCCCCTCGGCAA 51886
|| |||| ||||| |||||||| ||||||||||||| | |||| |||||
Sbjct 10666238 TGTTGTCCCCGAACTCGTGCACATGGAATCCGTGCA-GTCCCTTGGCAA 10666191
>seq3
Length=12541198
Score = 91.5 bits (100), Expect = 1e-13
Identities = 155/225 (69%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962
|||| ||| | |||||||| | | | ||||| || || |||||||| ||| || |||
Sbjct 3175473 CGCAGGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGACAAAGTA 3175414
Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022
|| || || ||||| || |||| |||| | |||||| |||||||| || |||||
Sbjct 3175413 CGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCC 3175354
Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082
|| || || || || || | | || | || || | ||||| || ||||
Sbjct 3175353 TCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGG 3175294
Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127
|| | || || ||||||||||| || | ||| ||||||||| ||
Sbjct 3175293 GTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCATGCCT 3175249
Score = 89.7 bits (98), Expect = 5e-13
Identities = 153/222 (69%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962
|||| ||| | |||||||| | | | ||||| || || |||||||||||| || |||
Sbjct 3174333 CGCAGGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTA 3174274
Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022
|| || || ||||| || |||| |||| | |||||| |||||||| || |||||
Sbjct 3174273 CGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCC 3174214
Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082
|| || || || || || | | || | || || | ||||| || ||||
Sbjct 3174213 TCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGG 3174154
Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124
|| | || || ||||||||||| || | || |||||||||
Sbjct 3174153 GTGATAGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCATG 3174112
Score = 89.7 bits (98), Expect = 5e-13
Identities = 153/222 (69%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962
|||| ||| | |||||||| | | | ||||| || || |||||||||||| || |||
Sbjct 3175017 CGCAGGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTA 3174958
Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022
|| || || ||||| || |||| |||| | |||||| |||||||| || |||||
Sbjct 3174957 CGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCC 3174898
Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082
|| || || || || || | | || | || || | ||||| || ||||
Sbjct 3174897 TCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGG 3174838
Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124
|| | || || ||||||||||| || | || |||||||||
Sbjct 3174837 GTGATGGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCATG 3174796
Score = 89.7 bits (98), Expect = 5e-13
Identities = 153/222 (69%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962
|||| ||| | |||||||| | | | ||||| || || |||||||||||| || |||
Sbjct 3175701 CGCAGGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTA 3175642
Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022
|| || || ||||| || |||| |||| | |||||| |||||||| || |||||
Sbjct 3175641 CGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCC 3175582
Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082
|| || || || || || | | || | || || | ||||| || ||||
Sbjct 3175581 TCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGG 3175522
Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124
|| | || || ||||||||||| || | || |||||||||
Sbjct 3175521 GTGATGGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCATG 3175480
Score = 86.0 bits (94), Expect = 6e-12
Identities = 152/222 (68%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962
|||| ||| | |||||||| | | | ||||| || || |||||||| ||| || |||
Sbjct 3174561 CGCAGGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGACAAAGTA 3174502
Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022
|| || || ||||| || |||| |||| | |||||| |||||||| || |||||
Sbjct 3174501 CGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCC 3174442
Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082
|| || || || || || | | || | || || | ||||| || ||||
Sbjct 3174441 TCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGG 3174382
Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124
|| | || || ||||||||||| || | || |||||||||
Sbjct 3174381 GTGATGGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCATG 3174340
Score = 86.0 bits (94), Expect = 6e-12
Identities = 152/222 (68%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962
|||| ||| | |||||||| | | | ||||| || || |||||||| ||| || |||
Sbjct 3174789 CGCAGGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGACAAAGTA 3174730
Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022
|| || || ||||| || |||| |||| | |||||| |||||||| || |||||
Sbjct 3174729 CGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCC 3174670
Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082
|| || || || || || | | || | || || | ||||| || ||||
Sbjct 3174669 TCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGG 3174610
Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124
|| | || || ||||||||||| || | || |||||||||
Sbjct 3174609 GTGATGGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCATG 3174568
Score = 86.0 bits (94), Expect = 6e-12
Identities = 152/222 (68%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962
|||| ||| | ||||| || | | | ||||| || || |||||||||||| || |||
Sbjct 3175245 CGCAGGCGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTA 3175186
Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022
|| || || ||||| || |||| |||| | |||||| |||||||| || |||||
Sbjct 3175185 CGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCC 3175126
Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082
|| || || || || || | | || | || || | ||||| || ||||
Sbjct 3175125 TCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGG 3175066
Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124
|| | || || ||||||||||| || | || |||||||||
Sbjct 3175065 GTGATGGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCATG 3175024
>seq12
Length=1235759
Score = 84.2 bits (92), Expect = 2e-11
Identities = 151/221 (68%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962
|||| ||| | ||||| || | | | ||||| || || |||||||||||| || ||
Sbjct 219388 CGCAGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTG 219329
Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022
|| ||| || ||||| || |||| |||| |||||||| |||||||| || |||||
Sbjct 219328 CGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCC 219269
Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082
|| || || || || || | | || | || || | ||||| || || |
Sbjct 219268 TCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAG 219209
Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| | || || ||||| |||||||| | ||| || |||||
Sbjct 219208 GTGATGGTCTTGCCAGTGAGAGTTTTCACGAAGATTTGCAT 219168
>seq6
Length=9197557
Score = 82.4 bits (90), Expect = 7e-11
Identities = 147/215 (68%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968
|||| |||||||| | | ||||| || || ||||||||||| | || || |
Sbjct 542323 CGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCA 542382
Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028
||||| ||||| || || | |||| |||||||| || ||||| || || || || ||
Sbjct 542383 TCTTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTG 542442
Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088
|| ||| || ||||| | || | || || | || || || || | || |
Sbjct 542443 TCCTGAATCTTGGCTTTCACGTTCTCAATGGTGTCAGAAGGTTCGACCTCCAGGGTAATA 542502
Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
||||| ||||||||||| || | |||||| |||||
Sbjct 542503 GTTTTTCCAGTCAGAGTCTTCACGAAAATTTGCAT 542537
Score = 82.4 bits (90), Expect = 7e-11
Identities = 147/215 (68%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968
|||| |||||||| | | ||||| || || ||||||||||| | || || |
Sbjct 543463 CGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCA 543522
Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028
|| || ||||| || |||| |||| |||||||| || || || || || || || ||
Sbjct 543523 TCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGATTCCCTCCTTG 543582
Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088
|| || || |||| | || | || |||| |||||||| || | || |
Sbjct 543583 TCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGTGATG 543642
Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
||||| ||||||||||| || | ||| ||||||||
Sbjct 543643 GTTTTTCCAGTCAGAGTCTTCACGAAGATCTGCAT 543677
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476582662904400
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