Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017
65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters
Query= NC_026421.1
Length=182380
Score E
Sequences producing significant alignments: (Bits) Value
seq15 163 3e-35
>seq15
Length=6594820
Score = 163 bits (180), Expect = 3e-35
Identities = 339/497 (68%), Gaps = 12/497 (2%)
Strand=Plus/Minus
Query 146842 AAATCGTCTATGTCCTCCACCCGCCTCAAAATCTTGAGCTTGGGGAAGGGTCGGGGGTTC 146901
||||| || |||| ||| ||| | | | || || ||||| || || || || || ||
Sbjct 4186024 AAATCTTCAATGTTCTCAACCTGTCGCTTGATGTTCAGCTTTGGAAACGGCCGCGGCTTG 4185965
Query 146902 CTGGCCAGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGG 146961
| |||||| ||||| || || || ||||| || || || || ||||| |||| |
Sbjct 4185964 CGTTTCAGCTGCTCCTTCAGTGGATCAACATGGTTAAGATACACATGAGCGTCGCCCATG 4185905
Query 146962 GTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGC 147021
||||| | |||||| |||| ||| | ||| || || ||||| | ||||||||| |||||
Sbjct 4185904 GTGTGGATAAAGTCGCCCGTCTTCAAGCCAGTTACATGGGCTATCATGTAGGTCAGCAGG 4185845
Query 147022 GAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGC 147081
| |||| ||| |||||||| || || || ||||||||||| | | ||| |||| |
Sbjct 4185844 GCGTAGGAGGCGATGTTGAATGGCACGCCAAGGCCCATGTCGGCGCTGCGCTGATACAAC 4185785
Query 147082 TGGCACGAGAGCTCCCC----GTCGGC--CACGTAAAACTGGCACAGGATGTGGCACGGC 147135
||||| || ||||| || ||| || ||||| ||||| ||| ||||| |||
Sbjct 4185784 TGGCAGGACAGCTCTCCGCGGGTCTGCGAGACGTAGAACTGTGCCAGACAATGGCAGGGC 4185725
Query 147136 GGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTGCTC 147195
|| || ||||| ||| | |||| || ||||| || || | | | ||| | | ||
Sbjct 4185724 GGAAGTGCCATTTTGGGTATGTCCAGCGGATTCCATGCGGACATGATGATCCGAC-GATC 4185666
Query 147196 -TCGGGGTTCCTCTTAATCTCTTCGATAACCCACCTCAGCTGGTCCACGCCCTGGCCCCC 147254
|| || | | || || || || | || ||||| | ||||| ||| |
Sbjct 4185665 GGACGGATTATGCCTGATGGTGTCAATTACTTGGCGCAATTGGTCGATGCCCTTGCCGCT 4185606
Query 147255 GTAGT--TTGTCCCGCAGTCCACGTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTAC 147312
||||| | ||| | ||||| | || ||| |||||||| | |||||| ||||| ||
Sbjct 4185605 GTAGTCATCGTCGC-AAGTCC-CATATTCGGCACCAAAGTGGCGCCACTGAAAGCCATAG 4185548
Query 147313 ACTGGCCCCAGGTCGCC 147329
||||| ||||| || ||
Sbjct 4185547 ACTGGACCCAGATCTCC 4185531
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583453063656000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |