Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq15 163 3e-35 >seq15 Length=6594820 Score = 163 bits (180), Expect = 3e-35 Identities = 339/497 (68%), Gaps = 12/497 (2%) Strand=Plus/Minus Query 146842 AAATCGTCTATGTCCTCCACCCGCCTCAAAATCTTGAGCTTGGGGAAGGGTCGGGGGTTC 146901 ||||| || |||| ||| ||| | | | || || ||||| || || || || || || Sbjct 4186024 AAATCTTCAATGTTCTCAACCTGTCGCTTGATGTTCAGCTTTGGAAACGGCCGCGGCTTG 4185965 Query 146902 CTGGCCAGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGG 146961 | |||||| ||||| || || || ||||| || || || || ||||| |||| | Sbjct 4185964 CGTTTCAGCTGCTCCTTCAGTGGATCAACATGGTTAAGATACACATGAGCGTCGCCCATG 4185905 Query 146962 GTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGC 147021 ||||| | |||||| |||| ||| | ||| || || ||||| | ||||||||| ||||| Sbjct 4185904 GTGTGGATAAAGTCGCCCGTCTTCAAGCCAGTTACATGGGCTATCATGTAGGTCAGCAGG 4185845 Query 147022 GAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGC 147081 | |||| ||| |||||||| || || || ||||||||||| | | ||| |||| | Sbjct 4185844 GCGTAGGAGGCGATGTTGAATGGCACGCCAAGGCCCATGTCGGCGCTGCGCTGATACAAC 4185785 Query 147082 TGGCACGAGAGCTCCCC----GTCGGC--CACGTAAAACTGGCACAGGATGTGGCACGGC 147135 ||||| || ||||| || ||| || ||||| ||||| ||| ||||| ||| Sbjct 4185784 TGGCAGGACAGCTCTCCGCGGGTCTGCGAGACGTAGAACTGTGCCAGACAATGGCAGGGC 4185725 Query 147136 GGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTGCTC 147195 || || ||||| ||| | |||| || ||||| || || | | | ||| | | || Sbjct 4185724 GGAAGTGCCATTTTGGGTATGTCCAGCGGATTCCATGCGGACATGATGATCCGAC-GATC 4185666 Query 147196 -TCGGGGTTCCTCTTAATCTCTTCGATAACCCACCTCAGCTGGTCCACGCCCTGGCCCCC 147254 || || | | || || || || | || ||||| | ||||| ||| | Sbjct 4185665 GGACGGATTATGCCTGATGGTGTCAATTACTTGGCGCAATTGGTCGATGCCCTTGCCGCT 4185606 Query 147255 GTAGT--TTGTCCCGCAGTCCACGTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTAC 147312 ||||| | ||| | ||||| | || ||| |||||||| | |||||| ||||| || Sbjct 4185605 GTAGTCATCGTCGC-AAGTCC-CATATTCGGCACCAAAGTGGCGCCACTGAAAGCCATAG 4185548 Query 147313 ACTGGCCCCAGGTCGCC 147329 ||||| ||||| || || Sbjct 4185547 ACTGGACCCAGATCTCC 4185531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583453063656000