Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017
65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq10 154 2e-31
seq6 147 3e-29
seq4 89.7 7e-12
>seq10
Length=19787792
Score = 154 bits (170), Expect = 2e-31
Identities = 326/481 (68%), Gaps = 4/481 (1%)
Strand=Plus/Minus
Query 1455796 AGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACT 1455855
|||| ||||||||||| ||||| | || ||||| || || ||| || |||
Sbjct 12208568 AGGCGGAGGCCTCCTTCTGGACTGTGGAAGAGGTGGATCTATCAAAGGACGCGACGGACT 12208509
Query 1455856 GGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCC 1455915
||| || | ||| |||||||| | || ||| || || || ||||| || |||
Sbjct 12208508 GGGCCCGTCTCACTGACAACGAGCGCTACTTTATCTCCCATGTGCTGGCCTTCTT-CGCT 12208450
Query 1455916 GCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTG 1455975
||| || ||||| || |||||| |||| || ||||||| | ||||| || |
Sbjct 12208449 GCCTCGGACGGCATTGTTAACGAGAATCTGGTCGAGCGCTTTAGTCAGGAGGTGCAGATC 12208390
Query 1455976 CCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACC 1456035
|||||||||||| || ||||| |||||||| ||||| || || | ||||| || |
Sbjct 12208389 ACAGAGGCACGTTGCTTCTACGGCTTCCAGATAGCCATGGAGAATGTGCACTCCGAGATG 12208330
Query 1456036 TACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGC 1456095
||| | || || ||||||||| | ||| ||| ||| ||| || | ||
Sbjct 12208329 TACAGCGTGCTCATTGACACCTACATACGGGAGCCGCAGGAGCGCGACTACTTGTTCAAT 12208270
Query 1456096 GCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAAC 1456155
|| || || || ||||| | || | | ||||| |||||||| ||| ||||| | |
Sbjct 12208269 GCTATTGAGACCATGCCGGCTGTAAAGCGCAAGGCGGACTGGGCCATGTCCTGGAT-ATC 12208211
Query 1456156 AAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCG-CGTCGAGGGCATCT 1456214
|| | | | ||||||||||||| | | | |||||| | ||| || || ||||
Sbjct 12208210 CTCGAAATCGGCCA-ACTTTGCCGAGCGTATTATTGCCTTTGCGGCCGTGGAAGGAATCT 12208152
Query 1456215 TTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTC 1456274
| || ||||| || | | ||||||||||| |||||||| || |||||||||||||
Sbjct 12208151 TCTTTAGTGGCAGCTTTGCCTCGATCTTTTGGCTGAAGAAGCGTGGTCTCATGCCCGGTC 12208092
Query 1456275 T 1456275
|
Sbjct 12208091 T 12208091
>seq6
Length=9197557
Score = 147 bits (162), Expect = 3e-29
Identities = 244/347 (70%), Gaps = 4/347 (1%)
Strand=Plus/Plus
Query 332873 AAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACG-TGTTGCA 332931
|||||||| ||||| || || ||| | | |||||| | | || || | |||||||
Sbjct 8290327 AAGCGCAGCATGGCGCAGCGCGACTGTATCGGCTCGATAATC-TTCTCGCTGGTGTTGCA 8290385
Query 332932 GGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGT-CGACCGGAGGGCCTGTT 332990
||| ||||| || || ||||| ||| ||| | |||||||| ||| || || ||||| |
Sbjct 8290386 GGCTAGGGCGAAGCGAGTCGTGTTGCTATAGATCTCCATGGTGCGA-CGCAGCGCCTGCT 8290444
Query 332991 GGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCG 333050
|||| || ||| | || ||| |||||||| ||||| | ||||||||| || || | |
Sbjct 8290445 GGGCGCCCTCCGTCATGCTGTCCGCCTCGTCCAGGATAACGATCTTGTGACGGCCCTTGG 8290504
Query 333051 GCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTCCACGCCGC 333110
| || ||| ||| | ||| ||||| | |||||||| || || | |||||
Sbjct 8290505 GTAGCGTCACCTTTTGCTGGGCAAACATCTTGATCTTGTTGCGCACCACATCGATGCCGC 8290564
Query 333111 GCTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCGGCCGCACCCAAGAGGACGC 333170
|||||| ||| || || || || ||||| ||||| | | | | || | |||| ||
Sbjct 8290565 GCTCGTTCGAGGCATTCAGCTCCAGCACTGCCTCCTTGTAGCTGTCTCCGAGCAGGATGC 8290624
Query 333171 GCGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCGGACCC 333217
| || |||||| ||| ||||||||||||| ||| || ||||||
Sbjct 8290625 GGGCGAGGCACTGAATGGTCGTGGTCTTGCCAACGCCCGGAGGACCC 8290671
>seq4
Length=9148293
Score = 89.7 bits (98), Expect = 7e-12
Identities = 66/75 (88%), Gaps = 3/75 (4%)
Strand=Plus/Minus
Query 1817559 CACCTCGGCGCGCGCGTCTCA--GACTGGGGCACATGGAGGTTCATCTCGTCGCCGTCAA 1817616
|||||||||||||| || || ||||| |||||||||||||||||||||||||| || |
Sbjct 6347164 CACCTCGGCGCGCGTCTC-CATTGACTGCGGCACATGGAGGTTCATCTCGTCGCCATCGA 6347106
Query 1817617 AGTCGGCATTGTAGG 1817631
| |||||||||||||
Sbjct 6347105 AATCGGCATTGTAGG 6347091
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177349195695980
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |