Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq10 154 2e-31 seq6 147 3e-29 seq4 89.7 7e-12 >seq10 Length=19787792 Score = 154 bits (170), Expect = 2e-31 Identities = 326/481 (68%), Gaps = 4/481 (1%) Strand=Plus/Minus Query 1455796 AGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACT 1455855 |||| ||||||||||| ||||| | || ||||| || || ||| || ||| Sbjct 12208568 AGGCGGAGGCCTCCTTCTGGACTGTGGAAGAGGTGGATCTATCAAAGGACGCGACGGACT 12208509 Query 1455856 GGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCC 1455915 ||| || | ||| |||||||| | || ||| || || || ||||| || ||| Sbjct 12208508 GGGCCCGTCTCACTGACAACGAGCGCTACTTTATCTCCCATGTGCTGGCCTTCTT-CGCT 12208450 Query 1455916 GCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTG 1455975 ||| || ||||| || |||||| |||| || ||||||| | ||||| || | Sbjct 12208449 GCCTCGGACGGCATTGTTAACGAGAATCTGGTCGAGCGCTTTAGTCAGGAGGTGCAGATC 12208390 Query 1455976 CCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACC 1456035 |||||||||||| || ||||| |||||||| ||||| || || | ||||| || | Sbjct 12208389 ACAGAGGCACGTTGCTTCTACGGCTTCCAGATAGCCATGGAGAATGTGCACTCCGAGATG 12208330 Query 1456036 TACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGC 1456095 ||| | || || ||||||||| | ||| ||| ||| ||| || | || Sbjct 12208329 TACAGCGTGCTCATTGACACCTACATACGGGAGCCGCAGGAGCGCGACTACTTGTTCAAT 12208270 Query 1456096 GCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAAC 1456155 || || || || ||||| | || | | ||||| |||||||| ||| ||||| | | Sbjct 12208269 GCTATTGAGACCATGCCGGCTGTAAAGCGCAAGGCGGACTGGGCCATGTCCTGGAT-ATC 12208211 Query 1456156 AAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCG-CGTCGAGGGCATCT 1456214 || | | | ||||||||||||| | | | |||||| | ||| || || |||| Sbjct 12208210 CTCGAAATCGGCCA-ACTTTGCCGAGCGTATTATTGCCTTTGCGGCCGTGGAAGGAATCT 12208152 Query 1456215 TTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTC 1456274 | || ||||| || | | ||||||||||| |||||||| || ||||||||||||| Sbjct 12208151 TCTTTAGTGGCAGCTTTGCCTCGATCTTTTGGCTGAAGAAGCGTGGTCTCATGCCCGGTC 12208092 Query 1456275 T 1456275 | Sbjct 12208091 T 12208091 >seq6 Length=9197557 Score = 147 bits (162), Expect = 3e-29 Identities = 244/347 (70%), Gaps = 4/347 (1%) Strand=Plus/Plus Query 332873 AAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACG-TGTTGCA 332931 |||||||| ||||| || || ||| | | |||||| | | || || | ||||||| Sbjct 8290327 AAGCGCAGCATGGCGCAGCGCGACTGTATCGGCTCGATAATC-TTCTCGCTGGTGTTGCA 8290385 Query 332932 GGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGT-CGACCGGAGGGCCTGTT 332990 ||| ||||| || || ||||| ||| ||| | |||||||| ||| || || ||||| | Sbjct 8290386 GGCTAGGGCGAAGCGAGTCGTGTTGCTATAGATCTCCATGGTGCGA-CGCAGCGCCTGCT 8290444 Query 332991 GGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCG 333050 |||| || ||| | || ||| |||||||| ||||| | ||||||||| || || | | Sbjct 8290445 GGGCGCCCTCCGTCATGCTGTCCGCCTCGTCCAGGATAACGATCTTGTGACGGCCCTTGG 8290504 Query 333051 GCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTCCACGCCGC 333110 | || ||| ||| | ||| ||||| | |||||||| || || | ||||| Sbjct 8290505 GTAGCGTCACCTTTTGCTGGGCAAACATCTTGATCTTGTTGCGCACCACATCGATGCCGC 8290564 Query 333111 GCTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCGGCCGCACCCAAGAGGACGC 333170 |||||| ||| || || || || ||||| ||||| | | | | || | |||| || Sbjct 8290565 GCTCGTTCGAGGCATTCAGCTCCAGCACTGCCTCCTTGTAGCTGTCTCCGAGCAGGATGC 8290624 Query 333171 GCGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCGGACCC 333217 | || |||||| ||| ||||||||||||| ||| || |||||| Sbjct 8290625 GGGCGAGGCACTGAATGGTCGTGGTCTTGCCAACGCCCGGAGGACCC 8290671 >seq4 Length=9148293 Score = 89.7 bits (98), Expect = 7e-12 Identities = 66/75 (88%), Gaps = 3/75 (4%) Strand=Plus/Minus Query 1817559 CACCTCGGCGCGCGCGTCTCA--GACTGGGGCACATGGAGGTTCATCTCGTCGCCGTCAA 1817616 |||||||||||||| || || ||||| |||||||||||||||||||||||||| || | Sbjct 6347164 CACCTCGGCGCGCGTCTC-CATTGACTGCGGCACATGGAGGTTCATCTCGTCGCCATCGA 6347106 Query 1817617 AGTCGGCATTGTAGG 1817631 | ||||||||||||| Sbjct 6347105 AATCGGCATTGTAGG 6347091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177349195695980