Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq10 96.9 5e-15 >seq10 Length=19787792 Score = 96.9 bits (106), Expect = 5e-15 Identities = 427/670 (64%), Gaps = 11/670 (2%) Strand=Plus/Plus Query 39486 CACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGT 39545 |||| ||||| || || | || || || || || || || || ||||| | ||||| | Sbjct 12207903 CACAGTTCATGCCAATCAAATTGACGGGCAGGGCTTCAGTGAGGAACTCCTGCTCGATTT 12207962 Query 39546 CTACGGCCTCTGTTATTATC--GATGTTACTACCTCATCACTCGGTGGATGCAATAAATG 39603 | || || || | || ||| |||| | | ||| | || | |||| || ||| Sbjct 12207963 CCACAGCATCCCTGATGATCTCGATGATGCG--CTCCCGCTTGGGCCGCTGCACTAGATG 12208020 Query 39604 TTTAAACATTAAGCAG-GCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGT 39662 | | |||| | ||| || ||||| || || || || || || | || | |||| Sbjct 12208021 GTGATACATGA-GCACCGCAAAGTCGCAGTGAAGACCTTCGTCACGGGAGATCAGCTCGT 12208079 Query 39663 TAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG 39722 | || || || || || ||||| ||||||||||| || |||||||| || | ||||| Sbjct 12208080 TGGAGAAGGTCAGACCGGGCATGAGACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGC 12208139 Query 39723 ATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTG 39782 ||| ||||||||| ||||| || || ||||| |||| || | ||| | || ||| Sbjct 12208140 TGCCACTAAAGAAGATTCCTTCCACGGCCGCAAAGGCAATAATACGCTCGGC-AAAGTTG 12208198 Query 39783 TATCATTATG----TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATT 39838 ||| | |||||| | ||||| || || || ||||||| ||||| Sbjct 12208199 GCCGATTTCGAGGATATCCAGGACATGGCCCAGTCCGCCTTGCGCTTTACAGCCGGCATG 12208258 Query 39839 GTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATT 39898 || || |||||||| || | || | || | || | || || || || Sbjct 12208259 GTCTCAATAGCATTGAACAAGTAGTCGCGCTCCTGCGGCTCCCGTATGTAGGTGTCAATG 12208318 Query 39899 AACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACAT 39958 | || || ||||| || || || | || || || || ||||| || ||||| || || Sbjct 12208319 AGCACGCTGTACATCTCGGAGTGCACATTCTCCATGGCTATCTGGAAGCCGTAGAAGCAA 12208378 Query 39959 CTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATT 40018 | ||| || || || || ||||| || ||| | || ||| ||| || || || || Sbjct 12208379 CGTGCCTCTGTGATCTGCACCTCCTGACTAAAGCGCTCGACCAGATTCTCGTTAACAATG 12208438 Query 40019 CCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTC 40078 || || || || || || |||| ||||| ||||| || || | | || Sbjct 12208439 CCGTCCGAGGCAGCGAAGAAGGCCAGCACATGGGAGATAAAGTAGCGCTCGTTGTCAGTG 12208498 Query 40079 AATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGAC 40138 | |||||| | || ||||||| ||| || ||||| | ||||| || || Sbjct 12208499 AGACGGGCCCAGTCCGTCGCGTCCTTTGATAGATCCACCTCTTCCACAGTCCAGAAGGAG 12208558 Query 40139 GCCTCTGCCT 40148 ||||| |||| Sbjct 12208559 GCCTCCGCCT 12208568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686867671335600