Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017
65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq10 96.9 5e-15
>seq10
Length=19787792
Score = 96.9 bits (106), Expect = 5e-15
Identities = 427/670 (64%), Gaps = 11/670 (2%)
Strand=Plus/Plus
Query 39486 CACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGT 39545
|||| ||||| || || | || || || || || || || || ||||| | ||||| |
Sbjct 12207903 CACAGTTCATGCCAATCAAATTGACGGGCAGGGCTTCAGTGAGGAACTCCTGCTCGATTT 12207962
Query 39546 CTACGGCCTCTGTTATTATC--GATGTTACTACCTCATCACTCGGTGGATGCAATAAATG 39603
| || || || | || ||| |||| | | ||| | || | |||| || |||
Sbjct 12207963 CCACAGCATCCCTGATGATCTCGATGATGCG--CTCCCGCTTGGGCCGCTGCACTAGATG 12208020
Query 39604 TTTAAACATTAAGCAG-GCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGT 39662
| | |||| | ||| || ||||| || || || || || || | || | ||||
Sbjct 12208021 GTGATACATGA-GCACCGCAAAGTCGCAGTGAAGACCTTCGTCACGGGAGATCAGCTCGT 12208079
Query 39663 TAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG 39722
| || || || || || ||||| ||||||||||| || |||||||| || | |||||
Sbjct 12208080 TGGAGAAGGTCAGACCGGGCATGAGACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGC 12208139
Query 39723 ATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTG 39782
||| ||||||||| ||||| || || ||||| |||| || | ||| | || |||
Sbjct 12208140 TGCCACTAAAGAAGATTCCTTCCACGGCCGCAAAGGCAATAATACGCTCGGC-AAAGTTG 12208198
Query 39783 TATCATTATG----TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATT 39838
||| | |||||| | ||||| || || || ||||||| |||||
Sbjct 12208199 GCCGATTTCGAGGATATCCAGGACATGGCCCAGTCCGCCTTGCGCTTTACAGCCGGCATG 12208258
Query 39839 GTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATT 39898
|| || |||||||| || | || | || | || | || || || ||
Sbjct 12208259 GTCTCAATAGCATTGAACAAGTAGTCGCGCTCCTGCGGCTCCCGTATGTAGGTGTCAATG 12208318
Query 39899 AACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACAT 39958
| || || ||||| || || || | || || || || ||||| || ||||| || ||
Sbjct 12208319 AGCACGCTGTACATCTCGGAGTGCACATTCTCCATGGCTATCTGGAAGCCGTAGAAGCAA 12208378
Query 39959 CTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATT 40018
| ||| || || || || ||||| || ||| | || ||| ||| || || || ||
Sbjct 12208379 CGTGCCTCTGTGATCTGCACCTCCTGACTAAAGCGCTCGACCAGATTCTCGTTAACAATG 12208438
Query 40019 CCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTC 40078
|| || || || || || |||| ||||| ||||| || || | | ||
Sbjct 12208439 CCGTCCGAGGCAGCGAAGAAGGCCAGCACATGGGAGATAAAGTAGCGCTCGTTGTCAGTG 12208498
Query 40079 AATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGAC 40138
| |||||| | || ||||||| ||| || ||||| | ||||| || ||
Sbjct 12208499 AGACGGGCCCAGTCCGTCGCGTCCTTTGATAGATCCACCTCTTCCACAGTCCAGAAGGAG 12208558
Query 40139 GCCTCTGCCT 40148
||||| ||||
Sbjct 12208559 GCCTCCGCCT 12208568
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686867671335600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |