Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq10 114 4e-20 >seq10 Length=19787792 Score = 114 bits (126), Expect = 4e-20 Identities = 124/163 (76%), Gaps = 1/163 (1%) Strand=Plus/Minus Query 443696 CAGCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAG 443755 || ||| | |||||| | | || ||||| | || |||||| | || ||||| ||||| Sbjct 12208198 CAACTTTGCCGAGCGTATTATTGCCTTTGCGGCCGTGGAAGGAATCTTCTTTAGTGGCAG 12208139 Query 443756 CTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTA 443815 |||| ||||| ||||| ||| |||| |||||||| || |||| |||||||||||| | Sbjct 12208138 CTTT-GCCTCGATCTTTTGGCTGAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCA 12208080 Query 443816 ACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGC 443858 |||| |||||| || ||||| ||| | || |||||||| || Sbjct 12208079 ACGAGCTGATCTCCCGTGACGAAGGTCTTCACTGCGACTTTGC 12208037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588238520841550