Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017
65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq15 95.1 2e-14
seq10 87.8 2e-12
>seq15
Length=6594820
Score = 95.1 bits (104), Expect = 2e-14
Identities = 181/264 (69%), Gaps = 2/264 (1%)
Strand=Plus/Minus
Query 181805 GTCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAATGTT 181864
||| || || ||| | || || ||||| || ||||| | ||||| || | ||| |||||
Sbjct 6045836 GTCCTTGCCGCCCGTCAGCCGAGTACCGAACTGACCGCGCGGCTCCAGCAAGTTTATGTT 6045777
Query 181865 GTTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGT-ATCCGCAAGGGACACTTCAC 181923
||| ||||| |||| | ||||| || ||||| || ||| | | |||| || || |
Sbjct 6045776 GTTCGAACCAACGTAGTTCTGGGCCAGATTCACGATAGTCATCTGGA-GGGAGACCTCGC 6045718
Query 181924 CGTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCATTTCAT 181983
|||||||||| || ||| | ||||| || | | | || ||| |||||||| | ||
Sbjct 6045717 CGTGGTGGTAGGCCGACATCTCCGCCACGGAGCCAGACAGCTGGGCCACCTTTACCTCGC 6045658
Query 181984 CTTTGAGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGAGACCAT 182043
||| ||| | |||||||| |||| || || | ||| ||||| || ||||
Sbjct 6045657 GCTTGTCGTTGCGCTTGAAGCAAGTGAACATGACCTTGCGCTGGCCCGGCTTCAGGCCAT 6045598
Query 182044 CCGCCATATGGGCAATAGAGCGCT 182067
|| ||| || || |||||||
Sbjct 6045597 CCACCAGGCTGGGGATGGAGCGCT 6045574
>seq10
Length=19787792
Score = 87.8 bits (96), Expect = 2e-12
Identities = 117/163 (72%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 122655 CACGGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAG 122714
||| ||||| || ||| ||||| || || ||||| || || || || |||||| ||
Sbjct 12208033 CACCGCAAAGTCGCAGTGAAGACCTTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTCAG 12208092
Query 122715 ACCTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAA 122774
||| ||||||||||| |||||||||| |||| | || | | || || |||||
Sbjct 12208093 ACCGGGCATGAGACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAAAGAA 12208152
Query 122775 GATACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAG 122817
||| || ||||| |||||| |||| || || ||||| |||
Sbjct 12208153 GATTCCTTCCACGGCCGCAAAGGCAATAATACGCTCGGCAAAG 12208195
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627994396584000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |