Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq15 95.1 2e-14 seq10 87.8 2e-12 >seq15 Length=6594820 Score = 95.1 bits (104), Expect = 2e-14 Identities = 181/264 (69%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 181805 GTCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAATGTT 181864 ||| || || ||| | || || ||||| || ||||| | ||||| || | ||| ||||| Sbjct 6045836 GTCCTTGCCGCCCGTCAGCCGAGTACCGAACTGACCGCGCGGCTCCAGCAAGTTTATGTT 6045777 Query 181865 GTTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGT-ATCCGCAAGGGACACTTCAC 181923 ||| ||||| |||| | ||||| || ||||| || ||| | | |||| || || | Sbjct 6045776 GTTCGAACCAACGTAGTTCTGGGCCAGATTCACGATAGTCATCTGGA-GGGAGACCTCGC 6045718 Query 181924 CGTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCATTTCAT 181983 |||||||||| || ||| | ||||| || | | | || ||| |||||||| | || Sbjct 6045717 CGTGGTGGTAGGCCGACATCTCCGCCACGGAGCCAGACAGCTGGGCCACCTTTACCTCGC 6045658 Query 181984 CTTTGAGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGAGACCAT 182043 ||| ||| | |||||||| |||| || || | ||| ||||| || |||| Sbjct 6045657 GCTTGTCGTTGCGCTTGAAGCAAGTGAACATGACCTTGCGCTGGCCCGGCTTCAGGCCAT 6045598 Query 182044 CCGCCATATGGGCAATAGAGCGCT 182067 || ||| || || ||||||| Sbjct 6045597 CCACCAGGCTGGGGATGGAGCGCT 6045574 >seq10 Length=19787792 Score = 87.8 bits (96), Expect = 2e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 122655 CACGGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAG 122714 ||| ||||| || ||| ||||| || || ||||| || || || || |||||| || Sbjct 12208033 CACCGCAAAGTCGCAGTGAAGACCTTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTCAG 12208092 Query 122715 ACCTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAA 122774 ||| ||||||||||| |||||||||| |||| | || | | || || ||||| Sbjct 12208093 ACCGGGCATGAGACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAAAGAA 12208152 Query 122775 GATACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAG 122817 ||| || ||||| |||||| |||| || || ||||| ||| Sbjct 12208153 GATTCCTTCCACGGCCGCAAAGGCAATAATACGCTCGGCAAAG 12208195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627994396584000