Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq10 154 2e-32 >seq10 Length=19787792 Score = 154 bits (170), Expect = 2e-32 Identities = 296/434 (68%), Gaps = 2/434 (0%) Strand=Plus/Plus Query 129742 CTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATAAAATCAAATGGGTT 129801 |||||| |||||||||||||| ||||||| ||| ||||||| |||| || || || Sbjct 12207763 CTTCTCAAAGAAGTTTGTCTTTCCGTCCAGCGAGATCATCTCCATGAAATTGAAAGGATT 12207822 Query 129802 CTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGACGATCCGAGACGTACTC 129861 ||| | ||| | || ||| || | || || || ||||| | ||| |||| Sbjct 12207823 CTTAGTGTTGTAGATCTTACCCACACCGAGCTCCCCTAGCAGCCGATCGGCCACGAACTC 12207882 Query 129862 AATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACATGGGAGCGCGTCCAA 129921 ||||||| ||||| | ||||||| || || | || || || || || Sbjct 12207883 GATGTACTGGGACATGAGAACACAGTTCATGCCAATCAAATTGACGGGCAGGGCTTCAGT 12207942 Query 129922 GATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTGAATGGTCTCCGTGCC 129981 || |||| ||| ||| || |||||||| |||| | ||| || ||| |||| || Sbjct 12207943 GAGGAACTCCTGCTCGATTTCCACAGCATCCCTGATGATCTCGATGATGCGCTCCC-GCT 12208001 Query 129982 AGGTCTATTGCGCAAAGTCTTGA-AGAGTTCCACGGCAAACTCCTGGTGGAGACCCTCGT 130040 || | ||| | | | ||| | | ||| ||||| || ||| ||||| |||| Sbjct 12208002 TGGGCCGCTGCACTAGATGGTGATACATGAGCACCGCAAAGTCGCAGTGAAGACCTTCGT 12208061 Query 130041 CACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACC 130100 |||||||||| || || || |||||| |||||| ||||||||||| |||||||||| || Sbjct 12208062 CACGGGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTTCTTCAGCC 12208121 Query 130101 AGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAAGA 130160 | || |||| ||| |||| |||||||| || ||||| ||| || |||| | Sbjct 12208122 AAAAGATCGAGGCAAAGCTGCCACTAAAGAAGATTCCTTCCACGGCCGCAAAGGCAATAA 12208181 Query 130161 GACGCTCAGCAAAG 130174 |||||| |||||| Sbjct 12208182 TACGCTCGGCAAAG 12208195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618398171192400