Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017
65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq10 154 2e-32
>seq10
Length=19787792
Score = 154 bits (170), Expect = 2e-32
Identities = 296/434 (68%), Gaps = 2/434 (0%)
Strand=Plus/Plus
Query 129742 CTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATAAAATCAAATGGGTT 129801
|||||| |||||||||||||| ||||||| ||| ||||||| |||| || || ||
Sbjct 12207763 CTTCTCAAAGAAGTTTGTCTTTCCGTCCAGCGAGATCATCTCCATGAAATTGAAAGGATT 12207822
Query 129802 CTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGACGATCCGAGACGTACTC 129861
||| | ||| | || ||| || | || || || ||||| | ||| ||||
Sbjct 12207823 CTTAGTGTTGTAGATCTTACCCACACCGAGCTCCCCTAGCAGCCGATCGGCCACGAACTC 12207882
Query 129862 AATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACATGGGAGCGCGTCCAA 129921
||||||| ||||| | ||||||| || || | || || || || ||
Sbjct 12207883 GATGTACTGGGACATGAGAACACAGTTCATGCCAATCAAATTGACGGGCAGGGCTTCAGT 12207942
Query 129922 GATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTGAATGGTCTCCGTGCC 129981
|| |||| ||| ||| || |||||||| |||| | ||| || ||| |||| ||
Sbjct 12207943 GAGGAACTCCTGCTCGATTTCCACAGCATCCCTGATGATCTCGATGATGCGCTCCC-GCT 12208001
Query 129982 AGGTCTATTGCGCAAAGTCTTGA-AGAGTTCCACGGCAAACTCCTGGTGGAGACCCTCGT 130040
|| | ||| | | | ||| | | ||| ||||| || ||| ||||| ||||
Sbjct 12208002 TGGGCCGCTGCACTAGATGGTGATACATGAGCACCGCAAAGTCGCAGTGAAGACCTTCGT 12208061
Query 130041 CACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACC 130100
|||||||||| || || || |||||| |||||| ||||||||||| |||||||||| ||
Sbjct 12208062 CACGGGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTTCTTCAGCC 12208121
Query 130101 AGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAAGA 130160
| || |||| ||| |||| |||||||| || ||||| ||| || |||| |
Sbjct 12208122 AAAAGATCGAGGCAAAGCTGCCACTAAAGAAGATTCCTTCCACGGCCGCAAAGGCAATAA 12208181
Query 130161 GACGCTCAGCAAAG 130174
|||||| ||||||
Sbjct 12208182 TACGCTCGGCAAAG 12208195
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618398171192400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |