Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017
65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq10 109 6e-19
seq15 98.7 1e-15
>seq10
Length=19787792
Score = 109 bits (120), Expect = 6e-19
Identities = 122/163 (75%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856
|||||| ||||| | | || |||||| || || || |||||||| ||| |||
Sbjct 12208195 CTTTGCCGAGCGTATTATTGCCTTTGCGGCCGTGGAAGGAATCTTCTTTAGTGGCAGCTT 12208136
Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916
| | || | |||||| |||||||| ||||||||||| ||||| ||||||||||||
Sbjct 12208135 TGCCTCGATCTTTTGGCTGAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGA 12208076
Query 94917 GCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTG 94959
||| ||||| |||||||| || || ||| || |||||||||
Sbjct 12208075 GCTGATCTCCCGTGACGAAGGTCTTCACTGCGACTTTGCGGTG 12208033
>seq15
Length=6594820
Score = 98.7 bits (108), Expect = 1e-15
Identities = 179/262 (68%), Gaps = 0/262 (0%)
Strand=Plus/Minus
Query 168458 TCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATTG 168517
||||| || ||| | || || ||||| |||||||| | |||||| || | || || |||
Sbjct 6045835 TCCTTGCCGCCCGTCAGCCGAGTACCGAACTGACCGCGCGGCTCCAGCAAGTTTATGTTG 6045776
Query 168518 TTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCACCG 168577
|| ||||| | ||||| | |||| || || || || | ||| ||||| || |||
Sbjct 6045775 TTCGAACCAACGTAGTTCTGGGCCAGATTCACGATAGTCATCTGGAGGGAGACCTCGCCG 6045716
Query 168578 TGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCATCC 168637
|||||||| || | |||| || || | | | || ||| ||||| || | ||| |
Sbjct 6045715 TGGTGGTAGGCCGACATCTCCGCCACGGAGCCAGACAGCTGGGCCACCTTTACCTCGCGC 6045656
Query 168638 TTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCATCC 168697
||| || | |||||| | | |||| |||||||| || ||||| || ||||||
Sbjct 6045655 TTGTCGTTGCGCTTGAAGCAAGTGAACATGACCTTGCGCTGGCCCGGCTTCAGGCCATCC 6045596
Query 168698 GCCATGTGTGCGATAGAACGCT 168719
||| | | ||| || ||||
Sbjct 6045595 ACCAGGCTGGGGATGGAGCGCT 6045574
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583225877259600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |