Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq10 109 6e-19 seq15 98.7 1e-15 >seq10 Length=19787792 Score = 109 bits (120), Expect = 6e-19 Identities = 122/163 (75%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 |||||| ||||| | | || |||||| || || || |||||||| ||| ||| Sbjct 12208195 CTTTGCCGAGCGTATTATTGCCTTTGCGGCCGTGGAAGGAATCTTCTTTAGTGGCAGCTT 12208136 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 | | || | |||||| |||||||| ||||||||||| ||||| |||||||||||| Sbjct 12208135 TGCCTCGATCTTTTGGCTGAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGA 12208076 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTG 94959 ||| ||||| |||||||| || || ||| || ||||||||| Sbjct 12208075 GCTGATCTCCCGTGACGAAGGTCTTCACTGCGACTTTGCGGTG 12208033 >seq15 Length=6594820 Score = 98.7 bits (108), Expect = 1e-15 Identities = 179/262 (68%), Gaps = 0/262 (0%) Strand=Plus/Minus Query 168458 TCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATTG 168517 ||||| || ||| | || || ||||| |||||||| | |||||| || | || || ||| Sbjct 6045835 TCCTTGCCGCCCGTCAGCCGAGTACCGAACTGACCGCGCGGCTCCAGCAAGTTTATGTTG 6045776 Query 168518 TTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCACCG 168577 || ||||| | ||||| | |||| || || || || | ||| ||||| || ||| Sbjct 6045775 TTCGAACCAACGTAGTTCTGGGCCAGATTCACGATAGTCATCTGGAGGGAGACCTCGCCG 6045716 Query 168578 TGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCATCC 168637 |||||||| || | |||| || || | | | || ||| ||||| || | ||| | Sbjct 6045715 TGGTGGTAGGCCGACATCTCCGCCACGGAGCCAGACAGCTGGGCCACCTTTACCTCGCGC 6045656 Query 168638 TTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCATCC 168697 ||| || | |||||| | | |||| |||||||| || ||||| || |||||| Sbjct 6045655 TTGTCGTTGCGCTTGAAGCAAGTGAACATGACCTTGCGCTGGCCCGGCTTCAGGCCATCC 6045596 Query 168698 GCCATGTGTGCGATAGAACGCT 168719 ||| | | ||| || |||| Sbjct 6045595 ACCAGGCTGGGGATGGAGCGCT 6045574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583225877259600