Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq9 232 2e-55 seq4631 188 2e-42 seq3 111 5e-19 >seq9 Length=30819483 Score = 232 bits (256), Expect = 2e-55 Identities = 738/1131 (65%), Gaps = 29/1131 (3%) Strand=Plus/Plus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 ||| | || || ||||| || || || || |||||||| | ||| | || ||| Sbjct 28007196 GCTGTTGGTATTGATTTGGGCACAACCTACTCTTGTGTGGGTGTGTTCCAGCATGGCAAG 28007255 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 || || || ||||| || || || ||||| | || || ||||| || ||||| || || Sbjct 28007256 GTCGAGATCATTGCCAACGACCAGGGTAATCGTACGACACCATCCTATGTTGCCTTCACG 28007315 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || || |||||| ||||||||||| | || || ||||| | || || |||| | Sbjct 28007316 GACACGGAGCGTTTGATTGGTGATGCCGCCAAGAATCAGGTGGCGATGAACCCAACCCAA 28007375 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTTTTCTGACAAATCTACA---CA 349434 ||| | || ||||| ||||| || |||||| | |||||| || | ||| | || Sbjct 28007376 ACGATCTTCGATGCCAAGCGTCTGATTGGTCGCAAGTTT----GAGGATTCTGCTGTGCA 28007431 Query 349435 ATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTAT 349494 ||||| | || || | || || ||| || ||| || || || | || Sbjct 28007432 GTCTGACATGAAGCACTGGCCCTTCGATGTGGTCAGCGTAGATGGC---AAGCCCAAGAT 28007488 Query 349495 TGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGT 349554 ||||||| || || | ||| | || || || ||||| || || || || ||||| Sbjct 28007489 TGAGGTTACGTACAAGGATGAGAAGAAGACCTTCTTCCCCGAGGAGATCTCCTCCATGGT 28007548 Query 349555 TTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGT 349614 || ||||||||||| | || || || || | || | ||||| || |||| || Sbjct 28007549 GTTGACCAAAATGAAGGAGACCGCCGAGGCGTACCTGGGCAAGACAGTGACCAATGCCGT 28007608 Query 349615 TATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAG 349674 || ||||| |||||||| || || || | |||||| || || || ||||| || | Sbjct 28007609 CATCACTGTGCCAGCCTACTTCAACGACTCGCAGCGTCAGGCGACCAAGGATGCCGGTAC 28007668 Query 349675 CATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATA 349734 |||||| || || ||||| || | || || || || ||||| || || || || || || Sbjct 28007669 CATTGCCGGATTGAATGTGCTGCGTATCATCAACGAGCCCACAGCCGCTGCTATCGCCTA 28007728 Query 349735 TGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGG 349794 ||| || || || | | || || || | |||||||| ||| | ||||| || Sbjct 28007729 TGGCCTGGACAAGAAGGCTGTTGGTGAGCGCAACGTGCTTATTTTCGATCTGGGTGGCGG 28007788 Query 349795 TACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGC 349854 ||| || ||||| || | || | | || || || || || || || ||| | || || Sbjct 28007789 TACCTTCGATGTGTCCATTCTGTCGATCGATGACGGCATCTTCGAGGTCAAATCTACGGC 28007848 Query 349855 TGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAA 349914 |||||||| ||||||||||| || ||||| || || ||||| || | || ||||| | Sbjct 28007849 CGGTGATACCCATCTTGGTGGTGAGGATTTCGACAACCGTCTAGTGACCCACTTTGTGCA 28007908 Query 349915 AGAATTTAAGCGTCAAGC-TAAAATTGA---TATTGGAGATAATCCTAGAGCAATGCGTC 349970 || || ||||| ||||| || | || | | | || | | || |||||| Sbjct 28007909 GGAGTTCAAGCG-CAAGCACAAGAAGGACCTGACCAGCAACAAGC---GTGCTCTGCGTC 28007964 Query 349971 GCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTA 350030 | || | || || || || || || |||||| || | || || | ||||| || | Sbjct 28007965 GTCTGCGCACCGCCTGCGAGCGCGCAAAGCGTACCCTCTCGTCGTCCACCCAGGCCAGCA 28008024 Query 350031 TTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGT 350090 |||| ||||| ||||| || || | ||||||| | || || || ||||| || | Sbjct 28008025 TTGAGATTGACTCTCTGTTCGAGGGTACCGATTTCTACACCTCGATCACTCGTGCCCGTT 28008084 Query 350091 TTGAAGAATTATGTATG--GATCTTTTTAG-AGCAACAATGGATCCTGTGGAAAAAGTAT 350147 | || || || | | ||||| || | ||| || ||||| || ||||| || | Sbjct 28008085 TCGAGGA--GCTGAACGCCGATCTGTTCCGCAGC-ACCATGGACCCCGTGGAGAAGGCTC 28008141 Query 350148 TAAAAGATGCAAAAATGTCCAAAAATCAG--ATTGATGAAGTAGTTTTAGTTGGTGGTTC 350205 | || || || || | || || | || | || | || | || ||||| || Sbjct 28008142 TGCGTGACGCCAAGCTG--GACAAGTCGGCCATCCACGACATTGTGCTGGTCGGTGGCTC 28008199 Query 350206 TACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTC 350265 || ||||| || || || || | | || || | || || ||||| || | Sbjct 28008200 CACCCGTATCCCCAAGGTGCAGCGCCTGCTCCAGGATCTGTTCAACGGCAAGGAGCTGAA 28008259 Query 350266 TAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGC 350316 | || || ||||| ||||| |||||||| |||||||| || || ||||| Sbjct 28008260 CAAGTCGATCAATCCCGATGAGGCTGTTGCCTATGGTGCCGCCGTCCAGGC 28008310 Score = 147 bits (162), Expect = 7e-30 Identities = 722/1135 (64%), Gaps = 37/1135 (3%) Strand=Plus/Minus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 ||||| || || ||||| || || ||| | | ||||| | ||| | || |||| Sbjct 27748572 GCTATTGGTATTGATTTGGGCACAACTCACTGCTGTGTGGGTGTGTTCCAGAATGGCAAG 27748513 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 || || || ||||| || || || ||||| | || || |||| || ||||| || || Sbjct 27748512 GTCGAGATCATTGCCAACGACCAGGGTAATCGTACCACATCATCCTATGTTGCCTTCACG 27748453 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || || ||||| ||||||||||| | || || || || | | | || ||||| | Sbjct 27748452 GATACGGAGCGCTTGATTGGTGATGCCGCCAAGAACCAGGTGACGGTGAACCCAAACCAG 27748393 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTT-----TTCTGACAAATCTACA 349432 | | | || || | ||||| || |||||| | |||||| ||||| || Sbjct 27748392 AGGATCTTCGAATCGAAGCGTCTGATTGGTCGCAAGTTTAAGGATTCTG------CTGTC 27748339 Query 349433 CAATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATT 349492 || |||| | || | | || || ||| || |||||| || || | Sbjct 27748338 CAGGCTGACATGAAGTACTGGCCCTTCGATGTGGTCAGTGTAGACGGC---AAGCCCAAG 27748282 Query 349493 ATTGAGGTTGAATATAAAG--GTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAA 349550 ||||||||| || || | | ||| || | | || || |||| || || || | | Sbjct 27748281 ATTGAGGTTACGTACAAGGACGAGAAGAAGACC--TTCTTCGCCGAGGAGATCTCTGCCA 27748224 Query 349551 TGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATG 349610 |||| || ||||||||||| | || || | || | || | || || || | | Sbjct 27748223 TGGTGTTGACCAAAATGAAGGAGACCGCCGAGGAGTACCTGGGCAAGACGGTGACCAAAG 27748164 Query 349611 CTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTG 349670 |||| || |||| |||||| | || || || | |||||| || || || ||||| | Sbjct 27748163 CTGTCATCTCTGTGCCAGCCCACTTCAACGACTCGCAGCGTCAGGCTACCAAGGATGCCG 27748104 Query 349671 GCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTG 349730 | | ||| || || || || || || | || || || || ||||| || || ||||| | Sbjct 27748103 GTACCATCGCCGGTTTGAAAGTCCTGCGTATCATCAACGAGCCCACGGCCGCTGCAATCG 27748044 Query 349731 CATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTG 349790 | ||||| || || || | | || || || | |||||||| ||| | |||| Sbjct 27748043 CCTATGGCCTGGACAAGAAGGCTGTTGGTGAGCGCAACGTGCTTATTTTCGATCTGGGTG 27747984 Query 349791 GTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAA 349850 | ||||| || ||||| || | || | | | || || || || | || ||| | | Sbjct 27747983 GCGGTACCTTCGATGTGTCCATTCTTTCGATCAATGATGGCATCTTCAAGGTCAAATCTA 27747924 Query 349851 CTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTG 349910 | || |||||||| ||||||||||| || ||||| || || ||||| || | || |||| Sbjct 27747923 CGGCCGGTGATACCCATCTTGGTGGTGAGGATTTCGACAACCGTCTAGTGACCCACTTTG 27747864 Query 349911 TTAAAGAATTTAAGCGTCAAGC-TAAAATTGA---TATTGGAGATAATCCTAGAGCAATG 349966 | | || || || || ||| | || | || | | | || | | || || Sbjct 27747863 TGCAGGAGTTCAATCG-CAATCACAAGAAGGACCTGACCAGCAACAAGC---GTGCTCTG 27747808 Query 349967 CGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACC 350026 ||||| || | || || || || || || ||||| || | ||||| | || | || Sbjct 27747807 CGTCGTCTGCGCACCGCCTGCGAGCGCGCAAAGCGCACCCTCTCATCGTCCACTCTGGCC 27747748 Query 350027 TCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCT 350086 ||||| ||||| ||||| || || | ||||||| | || || || ||||| Sbjct 27747747 AGAATTGAGATTGACTCTCTGTTCGAGGGTACCGATTTCTACACCTCGATCACTCGTGCC 27747688 Query 350087 CGGTTTGAAGAATTATGTATG--GATCTTTTTAG-AGCAACAATGGATCCTGTGGAAAAA 350143 | || || || || | | ||||| || | ||| || |||||||| ||||| || Sbjct 27747687 AGTTTCGAGGA--GCTGAACGCCGATCTGTTCCGCAGC-ACCATGGATCCCGTGGAGAAG 27747631 Query 350144 GTATTAAAAGATGCAAAAATGTCCAAAAATCAG--ATTGATGAAGTAGTTTTAGTTGGTG 350201 | | || || || || | || || | || | || | || || || |||| Sbjct 27747630 GCTCTGCGTGACGCCAAGCTG--GACAAGTCGGCCATCCACGACATTGTGTTGGTCGGTG 27747573 Query 350202 GTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAAC 350261 | || || ||||| || || || || | || || || | || || ||||| || | Sbjct 27747572 GCTCCACCCGTATCCCCAAGGTGCAGCGCTTGCTCCAGGATCTGTTCAACGGCAAGGAGC 27747513 Query 350262 CTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGC 350316 | || ||| |||| ||||| |||||||| ||||| || || || ||||| Sbjct 27747512 TGAACAAGTCGATTGATCCCGATGAGGCTGTTGCCTATGGCGCCGCCGTCCAGGC 27747458 >seq4631 Length=7852 Score = 188 bits (208), Expect = 2e-42 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||||| | | || || | ||| | |||||||| || ||||| ||||||||||| Sbjct 715 CCACCACGAAGCCGAAGTACTAAATGCAAGGTAGACTCCTTCTGAATGTTATAATCAGAC 656 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | |||||| |||||||| | ||| || ||||| ||||| | ||| || ||||| |||||| Sbjct 655 AGTGTTCGGCCATCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGATCTGGAGGA 596 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 ||||||||||| ||||| || || ||||| ||||| || || | ||| || ||||| || Sbjct 595 ATTCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACC 536 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || | ||||| || ||||| || |||||||| |||||||| Sbjct 535 TCAAGAGTTATGGTCTTGCCCGTTAGGGTCTTTACAAAGATCTGCAT 489 >seq3 Length=12541198 Score = 111 bits (122), Expect = 5e-19 Identities = 197/287 (69%), Gaps = 3/287 (1%) Strand=Plus/Plus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 ||||| || || || | ||||| | | || |||||||||| || ||||| ||| | Sbjct 3932535 CCCGAGGAGATCTCTGCCATGGTCCTCGGCAAGATGAAGGAAACCGCCGAAGCTTATCTG 3932594 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 || | | || || | || || | || || || ||||| || || |||||||||||| Sbjct 3932595 GGCAAGAAGGTCACCCACGCCGTGGTCACAGTGCCGGCCTACTTCAACGATGCCCAGCGT 3932654 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || || || ||||||||| |||||| || | |||||| | | || || || ||| Sbjct 3932655 CAAGCCACCAAGGATGCTGGCGTCATTGCCGGTCTCAATGTTATGCGCATTATCAACGAA 3932714 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771 || |||||||| || ||||| || || || ||||| ||| || || || || | Sbjct 3932715 CCGACTGCTGCGGCCATTGCCTACGGTCTGGATAA---GAGGGAGGGCGAGAAGAACGTG 3932771 Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAAC 349818 || | || ||| | || || ||||| || ||||| || || || || Sbjct 3932772 CTGGTGTTCGATCTTGGCGGCGGTACCTTCGATGTCTCCCTGCTGAC 3932818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515161405996370