Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017
65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq9 232 2e-55
seq4631 188 2e-42
seq3 111 5e-19
>seq9
Length=30819483
Score = 232 bits (256), Expect = 2e-55
Identities = 738/1131 (65%), Gaps = 29/1131 (3%)
Strand=Plus/Plus
Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258
||| | || || ||||| || || || || |||||||| | ||| | || |||
Sbjct 28007196 GCTGTTGGTATTGATTTGGGCACAACCTACTCTTGTGTGGGTGTGTTCCAGCATGGCAAG 28007255
Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318
|| || || ||||| || || || ||||| | || || ||||| || ||||| || ||
Sbjct 28007256 GTCGAGATCATTGCCAACGACCAGGGTAATCGTACGACACCATCCTATGTTGCCTTCACG 28007315
Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378
|| || |||||| ||||||||||| | || || ||||| | || || |||| |
Sbjct 28007316 GACACGGAGCGTTTGATTGGTGATGCCGCCAAGAATCAGGTGGCGATGAACCCAACCCAA 28007375
Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTTTTCTGACAAATCTACA---CA 349434
||| | || ||||| ||||| || |||||| | |||||| || | ||| | ||
Sbjct 28007376 ACGATCTTCGATGCCAAGCGTCTGATTGGTCGCAAGTTT----GAGGATTCTGCTGTGCA 28007431
Query 349435 ATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTAT 349494
||||| | || || | || || ||| || ||| || || || | ||
Sbjct 28007432 GTCTGACATGAAGCACTGGCCCTTCGATGTGGTCAGCGTAGATGGC---AAGCCCAAGAT 28007488
Query 349495 TGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGT 349554
||||||| || || | ||| | || || || ||||| || || || || |||||
Sbjct 28007489 TGAGGTTACGTACAAGGATGAGAAGAAGACCTTCTTCCCCGAGGAGATCTCCTCCATGGT 28007548
Query 349555 TTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGT 349614
|| ||||||||||| | || || || || | || | ||||| || |||| ||
Sbjct 28007549 GTTGACCAAAATGAAGGAGACCGCCGAGGCGTACCTGGGCAAGACAGTGACCAATGCCGT 28007608
Query 349615 TATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAG 349674
|| ||||| |||||||| || || || | |||||| || || || ||||| || |
Sbjct 28007609 CATCACTGTGCCAGCCTACTTCAACGACTCGCAGCGTCAGGCGACCAAGGATGCCGGTAC 28007668
Query 349675 CATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATA 349734
|||||| || || ||||| || | || || || || ||||| || || || || || ||
Sbjct 28007669 CATTGCCGGATTGAATGTGCTGCGTATCATCAACGAGCCCACAGCCGCTGCTATCGCCTA 28007728
Query 349735 TGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGG 349794
||| || || || | | || || || | |||||||| ||| | ||||| ||
Sbjct 28007729 TGGCCTGGACAAGAAGGCTGTTGGTGAGCGCAACGTGCTTATTTTCGATCTGGGTGGCGG 28007788
Query 349795 TACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGC 349854
||| || ||||| || | || | | || || || || || || || ||| | || ||
Sbjct 28007789 TACCTTCGATGTGTCCATTCTGTCGATCGATGACGGCATCTTCGAGGTCAAATCTACGGC 28007848
Query 349855 TGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAA 349914
|||||||| ||||||||||| || ||||| || || ||||| || | || ||||| |
Sbjct 28007849 CGGTGATACCCATCTTGGTGGTGAGGATTTCGACAACCGTCTAGTGACCCACTTTGTGCA 28007908
Query 349915 AGAATTTAAGCGTCAAGC-TAAAATTGA---TATTGGAGATAATCCTAGAGCAATGCGTC 349970
|| || ||||| ||||| || | || | | | || | | || ||||||
Sbjct 28007909 GGAGTTCAAGCG-CAAGCACAAGAAGGACCTGACCAGCAACAAGC---GTGCTCTGCGTC 28007964
Query 349971 GCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTA 350030
| || | || || || || || || |||||| || | || || | ||||| || |
Sbjct 28007965 GTCTGCGCACCGCCTGCGAGCGCGCAAAGCGTACCCTCTCGTCGTCCACCCAGGCCAGCA 28008024
Query 350031 TTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGT 350090
|||| ||||| ||||| || || | ||||||| | || || || ||||| || |
Sbjct 28008025 TTGAGATTGACTCTCTGTTCGAGGGTACCGATTTCTACACCTCGATCACTCGTGCCCGTT 28008084
Query 350091 TTGAAGAATTATGTATG--GATCTTTTTAG-AGCAACAATGGATCCTGTGGAAAAAGTAT 350147
| || || || | | ||||| || | ||| || ||||| || ||||| || |
Sbjct 28008085 TCGAGGA--GCTGAACGCCGATCTGTTCCGCAGC-ACCATGGACCCCGTGGAGAAGGCTC 28008141
Query 350148 TAAAAGATGCAAAAATGTCCAAAAATCAG--ATTGATGAAGTAGTTTTAGTTGGTGGTTC 350205
| || || || || | || || | || | || | || | || ||||| ||
Sbjct 28008142 TGCGTGACGCCAAGCTG--GACAAGTCGGCCATCCACGACATTGTGCTGGTCGGTGGCTC 28008199
Query 350206 TACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTC 350265
|| ||||| || || || || | | || || | || || ||||| || |
Sbjct 28008200 CACCCGTATCCCCAAGGTGCAGCGCCTGCTCCAGGATCTGTTCAACGGCAAGGAGCTGAA 28008259
Query 350266 TAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGC 350316
| || || ||||| ||||| |||||||| |||||||| || || |||||
Sbjct 28008260 CAAGTCGATCAATCCCGATGAGGCTGTTGCCTATGGTGCCGCCGTCCAGGC 28008310
Score = 147 bits (162), Expect = 7e-30
Identities = 722/1135 (64%), Gaps = 37/1135 (3%)
Strand=Plus/Minus
Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258
||||| || || ||||| || || ||| | | ||||| | ||| | || ||||
Sbjct 27748572 GCTATTGGTATTGATTTGGGCACAACTCACTGCTGTGTGGGTGTGTTCCAGAATGGCAAG 27748513
Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318
|| || || ||||| || || || ||||| | || || |||| || ||||| || ||
Sbjct 27748512 GTCGAGATCATTGCCAACGACCAGGGTAATCGTACCACATCATCCTATGTTGCCTTCACG 27748453
Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378
|| || ||||| ||||||||||| | || || || || | | | || ||||| |
Sbjct 27748452 GATACGGAGCGCTTGATTGGTGATGCCGCCAAGAACCAGGTGACGGTGAACCCAAACCAG 27748393
Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTT-----TTCTGACAAATCTACA 349432
| | | || || | ||||| || |||||| | |||||| ||||| ||
Sbjct 27748392 AGGATCTTCGAATCGAAGCGTCTGATTGGTCGCAAGTTTAAGGATTCTG------CTGTC 27748339
Query 349433 CAATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATT 349492
|| |||| | || | | || || ||| || |||||| || || |
Sbjct 27748338 CAGGCTGACATGAAGTACTGGCCCTTCGATGTGGTCAGTGTAGACGGC---AAGCCCAAG 27748282
Query 349493 ATTGAGGTTGAATATAAAG--GTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAA 349550
||||||||| || || | | ||| || | | || || |||| || || || | |
Sbjct 27748281 ATTGAGGTTACGTACAAGGACGAGAAGAAGACC--TTCTTCGCCGAGGAGATCTCTGCCA 27748224
Query 349551 TGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATG 349610
|||| || ||||||||||| | || || | || | || | || || || | |
Sbjct 27748223 TGGTGTTGACCAAAATGAAGGAGACCGCCGAGGAGTACCTGGGCAAGACGGTGACCAAAG 27748164
Query 349611 CTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTG 349670
|||| || |||| |||||| | || || || | |||||| || || || ||||| |
Sbjct 27748163 CTGTCATCTCTGTGCCAGCCCACTTCAACGACTCGCAGCGTCAGGCTACCAAGGATGCCG 27748104
Query 349671 GCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTG 349730
| | ||| || || || || || || | || || || || ||||| || || ||||| |
Sbjct 27748103 GTACCATCGCCGGTTTGAAAGTCCTGCGTATCATCAACGAGCCCACGGCCGCTGCAATCG 27748044
Query 349731 CATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTG 349790
| ||||| || || || | | || || || | |||||||| ||| | ||||
Sbjct 27748043 CCTATGGCCTGGACAAGAAGGCTGTTGGTGAGCGCAACGTGCTTATTTTCGATCTGGGTG 27747984
Query 349791 GTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAA 349850
| ||||| || ||||| || | || | | | || || || || | || ||| | |
Sbjct 27747983 GCGGTACCTTCGATGTGTCCATTCTTTCGATCAATGATGGCATCTTCAAGGTCAAATCTA 27747924
Query 349851 CTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTG 349910
| || |||||||| ||||||||||| || ||||| || || ||||| || | || ||||
Sbjct 27747923 CGGCCGGTGATACCCATCTTGGTGGTGAGGATTTCGACAACCGTCTAGTGACCCACTTTG 27747864
Query 349911 TTAAAGAATTTAAGCGTCAAGC-TAAAATTGA---TATTGGAGATAATCCTAGAGCAATG 349966
| | || || || || ||| | || | || | | | || | | || ||
Sbjct 27747863 TGCAGGAGTTCAATCG-CAATCACAAGAAGGACCTGACCAGCAACAAGC---GTGCTCTG 27747808
Query 349967 CGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACC 350026
||||| || | || || || || || || ||||| || | ||||| | || | ||
Sbjct 27747807 CGTCGTCTGCGCACCGCCTGCGAGCGCGCAAAGCGCACCCTCTCATCGTCCACTCTGGCC 27747748
Query 350027 TCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCT 350086
||||| ||||| ||||| || || | ||||||| | || || || |||||
Sbjct 27747747 AGAATTGAGATTGACTCTCTGTTCGAGGGTACCGATTTCTACACCTCGATCACTCGTGCC 27747688
Query 350087 CGGTTTGAAGAATTATGTATG--GATCTTTTTAG-AGCAACAATGGATCCTGTGGAAAAA 350143
| || || || || | | ||||| || | ||| || |||||||| ||||| ||
Sbjct 27747687 AGTTTCGAGGA--GCTGAACGCCGATCTGTTCCGCAGC-ACCATGGATCCCGTGGAGAAG 27747631
Query 350144 GTATTAAAAGATGCAAAAATGTCCAAAAATCAG--ATTGATGAAGTAGTTTTAGTTGGTG 350201
| | || || || || | || || | || | || | || || || ||||
Sbjct 27747630 GCTCTGCGTGACGCCAAGCTG--GACAAGTCGGCCATCCACGACATTGTGTTGGTCGGTG 27747573
Query 350202 GTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAAC 350261
| || || ||||| || || || || | || || || | || || ||||| || |
Sbjct 27747572 GCTCCACCCGTATCCCCAAGGTGCAGCGCTTGCTCCAGGATCTGTTCAACGGCAAGGAGC 27747513
Query 350262 CTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGC 350316
| || ||| |||| ||||| |||||||| ||||| || || || |||||
Sbjct 27747512 TGAACAAGTCGATTGATCCCGATGAGGCTGTTGCCTATGGCGCCGCCGTCCAGGC 27747458
>seq4631
Length=7852
Score = 188 bits (208), Expect = 2e-42
Identities = 178/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570
|||||||| | | || || | ||| | |||||||| || ||||| |||||||||||
Sbjct 715 CCACCACGAAGCCGAAGTACTAAATGCAAGGTAGACTCCTTCTGAATGTTATAATCAGAC 656
Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630
| |||||| |||||||| | ||| || ||||| ||||| | ||| || ||||| ||||||
Sbjct 655 AGTGTTCGGCCATCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGATCTGGAGGA 596
Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690
||||||||||| ||||| || || ||||| ||||| || || | ||| || ||||| ||
Sbjct 595 ATTCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACC 536
Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||||| || | ||||| || ||||| || |||||||| ||||||||
Sbjct 535 TCAAGAGTTATGGTCTTGCCCGTTAGGGTCTTTACAAAGATCTGCAT 489
>seq3
Length=12541198
Score = 111 bits (122), Expect = 5e-19
Identities = 197/287 (69%), Gaps = 3/287 (1%)
Strand=Plus/Plus
Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591
||||| || || || | ||||| | | || |||||||||| || ||||| ||| |
Sbjct 3932535 CCCGAGGAGATCTCTGCCATGGTCCTCGGCAAGATGAAGGAAACCGCCGAAGCTTATCTG 3932594
Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651
|| | | || || | || || | || || || ||||| || || ||||||||||||
Sbjct 3932595 GGCAAGAAGGTCACCCACGCCGTGGTCACAGTGCCGGCCTACTTCAACGATGCCCAGCGT 3932654
Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711
|| || || ||||||||| |||||| || | |||||| | | || || || |||
Sbjct 3932655 CAAGCCACCAAGGATGCTGGCGTCATTGCCGGTCTCAATGTTATGCGCATTATCAACGAA 3932714
Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771
|| |||||||| || ||||| || || || ||||| ||| || || || || |
Sbjct 3932715 CCGACTGCTGCGGCCATTGCCTACGGTCTGGATAA---GAGGGAGGGCGAGAAGAACGTG 3932771
Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAAC 349818
|| | || ||| | || || ||||| || ||||| || || || ||
Sbjct 3932772 CTGGTGTTCGATCTTGGCGGCGGTACCTTCGATGTCTCCCTGCTGAC 3932818
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515161405996370
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