Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017
65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq10 111 2e-19
>seq10
Length=19787792
Score = 111 bits (122), Expect = 2e-19
Identities = 340/520 (65%), Gaps = 13/520 (3%)
Strand=Plus/Minus
Query 59893 TGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGT 59952
||||| ||| || ||||| || || || || | || || || ||||||||| |
Sbjct 12208277 TGTTCAATGCTATTGAGACCATGCCGGCTGTAAAGCGCAAGGCGGACTGGGCCATGTCCT 12208218
Query 59953 GGATGAGTCCTGGA-----GCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGA 60007
|||| |||| || || ||||| | ||| | || || ||||| ||||||
Sbjct 12208217 GGATA--TCCTCGAAATCGGCCAACTTTGCCGAGCGTATTATTGCCTTTGCGGCCGTGGA 12208160
Query 60008 AGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCAT 60067
|||||||||||| |||| || | || || ||||| || |||||||| |||||
Sbjct 12208159 AGGAATCTTCTTTAGTGGCAGCTTTGCCTCGATCTTTTGGCTGAAGAAGCGTGGTCTCAT 12208100
Query 60068 GCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTT 60127
||| || |||| ||||||||||||||||| ||||| ||||| || || || || ||
Sbjct 12208099 GCCCGGTCTGACCTTCTCCAACGAGCTGATCTCCCGTGACGAAGGTCTTCACTGCGACTT 12208040
Query 60128 TGCAGTGACGCTCTATTCACACCTATTGGAAAAATGCCCTTCC--AAGGATATTCACAAG 60185
||| ||| | ||| || ||| || | |||| | || || | ||
Sbjct 12208039 TGCGGTGCTCATGTATCACCATCTAGTG--CAGCGGCCCAAGCGGGAGCGCATCATCGAG 12207982
Query 60186 ATTGTTCAGTG-GGCTTGTGAAGTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAA 60244
| | |||| | ||| ||| | ||| |||||| |||| ||||| || || |||
Sbjct 12207981 A-TCATCAGGGATGCTGTGGAAATCGAGCAGGAGTTCCTCACTGAAGCCCTGCCCGTCAA 12207923
Query 60245 ACTCATAGGTATGGACGCTGGAGAAATGACGCAGTACATTCAGTTTGTCGCGGACCGCCT 60304
| || || ||| || || ||| | |||||||| |||| || || || || ||
Sbjct 12207922 TTTGATTGGCATGAACTGTGTTCTCATGTCCCAGTACATCGAGTTCGTGGCCGATCGGCT 12207863
Query 60305 CATGGCCCAGTTTGGAGAAGGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGA 60364
| | || | || | || || ||| | || || |||||| | | |||||
Sbjct 12207862 GCTAGGGGAGCTCGGTGTGGGTAAGATCTACAACACTAAGAATCCTTTCAATTTCATGGA 12207803
Query 60365 GACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAG 60404
|| |||||| |||| || ||||| |||||||||||||||
Sbjct 12207802 GATGATCTCGCTGGACGGAAAGACAAACTTCTTTGAGAAG 12207763
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548491957077600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |