Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq10 111 2e-19 >seq10 Length=19787792 Score = 111 bits (122), Expect = 2e-19 Identities = 340/520 (65%), Gaps = 13/520 (3%) Strand=Plus/Minus Query 59893 TGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGT 59952 ||||| ||| || ||||| || || || || | || || || ||||||||| | Sbjct 12208277 TGTTCAATGCTATTGAGACCATGCCGGCTGTAAAGCGCAAGGCGGACTGGGCCATGTCCT 12208218 Query 59953 GGATGAGTCCTGGA-----GCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGA 60007 |||| |||| || || ||||| | ||| | || || ||||| |||||| Sbjct 12208217 GGATA--TCCTCGAAATCGGCCAACTTTGCCGAGCGTATTATTGCCTTTGCGGCCGTGGA 12208160 Query 60008 AGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCAT 60067 |||||||||||| |||| || | || || ||||| || |||||||| ||||| Sbjct 12208159 AGGAATCTTCTTTAGTGGCAGCTTTGCCTCGATCTTTTGGCTGAAGAAGCGTGGTCTCAT 12208100 Query 60068 GCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTT 60127 ||| || |||| ||||||||||||||||| ||||| ||||| || || || || || Sbjct 12208099 GCCCGGTCTGACCTTCTCCAACGAGCTGATCTCCCGTGACGAAGGTCTTCACTGCGACTT 12208040 Query 60128 TGCAGTGACGCTCTATTCACACCTATTGGAAAAATGCCCTTCC--AAGGATATTCACAAG 60185 ||| ||| | ||| || ||| || | |||| | || || | || Sbjct 12208039 TGCGGTGCTCATGTATCACCATCTAGTG--CAGCGGCCCAAGCGGGAGCGCATCATCGAG 12207982 Query 60186 ATTGTTCAGTG-GGCTTGTGAAGTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAA 60244 | | |||| | ||| ||| | ||| |||||| |||| ||||| || || ||| Sbjct 12207981 A-TCATCAGGGATGCTGTGGAAATCGAGCAGGAGTTCCTCACTGAAGCCCTGCCCGTCAA 12207923 Query 60245 ACTCATAGGTATGGACGCTGGAGAAATGACGCAGTACATTCAGTTTGTCGCGGACCGCCT 60304 | || || ||| || || ||| | |||||||| |||| || || || || || Sbjct 12207922 TTTGATTGGCATGAACTGTGTTCTCATGTCCCAGTACATCGAGTTCGTGGCCGATCGGCT 12207863 Query 60305 CATGGCCCAGTTTGGAGAAGGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGA 60364 | | || | || | || || ||| | || || |||||| | | ||||| Sbjct 12207862 GCTAGGGGAGCTCGGTGTGGGTAAGATCTACAACACTAAGAATCCTTTCAATTTCATGGA 12207803 Query 60365 GACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAG 60404 || |||||| |||| || ||||| ||||||||||||||| Sbjct 12207802 GATGATCTCGCTGGACGGAAAGACAAACTTCTTTGAGAAG 12207763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548491957077600