Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq15 165 9e-36 seq10 100 3e-16 >seq15 Length=6594820 Score = 165 bits (182), Expect = 9e-36 Identities = 306/449 (68%), Gaps = 0/449 (0%) Strand=Plus/Minus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 ||||| ||||| ||||| || || |||| ||||| |||||| | || || | || || Sbjct 6046015 CCAGTGCCGATGCCCTCGGCTCCGTTCACCAGAACCATCGGTATGATGGGCAGATACCAC 6045956 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCGGA 117271 ||||| | | | | || ||||| || ||||| |||| || || ||| || Sbjct 6045955 AATGGCTCGATCCTCTGGCCATCGTCGGTCTGGTACTCCAGCAGCGGATCGTCCAGGGGG 6045896 Query 117272 TCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCA 117331 | | | ||| ||| ||| | | | |||||||||||||||| ||| ||| Sbjct 6045895 TGGTAGATGAGGCGCGTCAGCGGCGACATCAGTGTGAAAATGTAACGAGCGCTGGCACAG 6045836 Query 117332 TCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTG 117391 |||||||| || | || || |||||||| || || | |||||||| | ||| | |||| Sbjct 6045835 TCCTTGCCGCCCGTCAGCCGAGTACCGAACTGACCGCGCGGCTCCAGCAAGTTTATGTTG 6045776 Query 117392 TTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCA 117451 || | || || |||| || |||| || || || || |||||| |||| || Sbjct 6045775 TTCGAACCAACGTAGTTCTGGGCCAGATTCACGATAGTCATCTGGAGGGAGACCTCGCCG 6045716 Query 117452 TGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGAC 117511 ||||| || |||| | |||||||||| |||| | |||||| |||||||| | || | Sbjct 6045715 TGGTGGTAGGCCGACATCTCCGCCACGGAGCCAGACAGCTGGGCCACCTTTACCTCGCGC 6045656 Query 117512 GTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATCC 117571 | ||| ||||| ||| | | || ||||||||||| | |||||||| |||||| Sbjct 6045655 TTGTCGTTGCGCTTGAAGCAAGTGAACATGACCTTGCGCTGGCCCGGCTTCAGGCCATCC 6045596 Query 117572 GCCACGTGAGGGATCGAACGCTTGATGTC 117600 ||| | ||||| || |||| | |||| Sbjct 6045595 ACCAGGCTGGGGATGGAGCGCTCGTTGTC 6045567 Score = 122 bits (134), Expect = 1e-22 Identities = 301/453 (66%), Gaps = 4/453 (1%) Strand=Plus/Minus Query 151874 ATCCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAA 151933 |||| || ||||||||||| || ||||| ||||||| |||||| | || || || Sbjct 6046017 ATCCAGTGCCGATGCCCTCGGCTCCGTTCACCAGAACCATCGGTATGATGGGCAGATACC 6045958 Query 151934 ACTCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCG 151993 || ||||| | | || || || || || ||| | || | | || ||| | Sbjct 6045957 ACAATGGCTCGATCCTCTGGCCATCGTCGGTCTGGTACTCCAGCAGCGGATCGTCCAGGG 6045898 Query 151994 GATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCG 152053 | | | | || | || |||| || || | ||||| ||||| || | |||||| Sbjct 6045897 GGTGGTAGATGAGGCGCGTCAGCGGCGACATCAGTGTGAAAATGTAACGAGCGCTGGCAC 6045838 Query 152054 CATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGT 152113 |||||||| || | |||||| || || ||||| || ||||| || | ||| | || Sbjct 6045837 AGTCCTTGCCGCCCGTCAGCCGAGTACCGAACTGACCGCGCGGCTCCAGCAAGTTTATGT 6045778 Query 152114 TGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCAC 152173 |||| | || ||| | ||||| |||| |||||| || || ||| || | || | Sbjct 6045777 TGTTCGAACCAACGTAGTTCTGGGCCAGATTCACGATAGTCATCTGGAGGGAGACCTCGC 6045718 Query 152174 CGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTC-C 152232 ||||||| || |||| | |||||| | | | || | || ||| |||||||| | || | Sbjct 6045717 CGTGGTGGTAGGCCGACATCTCCGCCACGGAGCCAGACAGCTGGGCCACCTTTACCTCGC 6045658 Query 152233 G-TCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACC 152291 | | ||| ||| ||||| || | | | || |||||||||||| || |||| || Sbjct 6045657 GCTTGTC--GTTGCGCTTGAAGCAAGTGAACATGACCTTGCGCTGGCCCGGCTTCAGGCC 6045600 Query 152292 GTCCACCACGTGAGGAATCGAACGCTTGATGTC 152324 ||||||| | || || || |||| | |||| Sbjct 6045599 ATCCACCAGGCTGGGGATGGAGCGCTCGTTGTC 6045567 Score = 113 bits (124), Expect = 5e-20 Identities = 220/319 (69%), Gaps = 17/319 (5%) Strand=Plus/Plus Query 158939 CAATAAACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGG 158998 ||| |||||| || | |||||||||||||| || ||||||||| ||||| ||| | | Sbjct 1495128 CAACAAACTCACGTACACTGTGCGTCTCTCCGGTGGCAATCACATAGTCCGATGGGCTGT 1495187 Query 158999 GCTGTTGGAGCATGAGCCACATGGCCTCGACGTAATC-CTGCGCGTGACCCCAGTCGCGC 159057 | || | ||| | |||||| ||||| |||||||| ||| ||||| ||||| || ||| Sbjct 1495188 CGCGCTGCAACATCATCCACATTGCCTCCACGTAATCACTG-GCGTGGCCCCAATCCCGC 1495246 Query 159058 TTGGCATCCATGTTCCCGAGCTCGATGACTTTTCCAGACTTTTTCCA-------CTCAGC 159110 || | ||| | ||| |||||||| | | | |||| | || | || || || Sbjct 1495247 TTCGAATCTAAGTTTCCGAGCTCAA--AGTATTCC--ATTTGGTTCAGGAGAATCTTTGC 1495302 Query 159111 CAGACCGAGCGTGATCTTGCGCGTCACAAACTCTGCTCCGCGCCGTTCCGA--CTCATGG 159168 || | |||| ||||| | || ||||| | ||||||||| || || ||| ||| Sbjct 1495303 CACGCTTCGCGTTATCTTTCTGGTAACAAAATTCTCTCCGCGCC--TCGGACTCTCGTGG 1495360 Query 159169 TTAAACAGAATGCCGGTACAAGCGAACAGGTTATAGGACTCGCGGTAATTTTTAGTTATC 159228 ||||| || || || | || ||| ||| || |||| ||| | ||| || | |||| Sbjct 1495361 TTAAAGAGGATTCCATTGCAGGCGTACATATTGTAGGCCTCCCTGTAGTTGATGACTATC 1495420 Query 159229 CAGTATCCAAAGAGCTTGG 159247 || | ||| | | ||||| Sbjct 1495421 CAAAAACCATACATCTTGG 1495439 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/147 (73%), Gaps = 4/147 (3%) Strand=Plus/Plus Query 124486 CCTCGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCT--TCGGG 124543 |||| | ||||||||| | ||||||||||| || ||| ||||||| | || | || Sbjct 1495125 CCTCAACAAACTCACGTACACTGTGCGTCTCTCCGGTGGCAATCACATAGTCCGATGGGC 1495184 Query 124544 AATCGACTGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTC 124603 ||| |||||||||| | |||||| || | ||||| || ||||| ||||| || Sbjct 1495185 TGTCGC--GCTGCAACATCATCCACATTGCCTCCACGTAATCACTGGCGTGGCCCCAATC 1495242 Query 124604 GCGCTTGGCATCCAGGTTTCCGAGCTC 124630 ||||| | ||| | |||||||||||| Sbjct 1495243 CCGCTTCGAATCTAAGTTTCCGAGCTC 1495269 >seq10 Length=19787792 Score = 100 bits (110), Expect = 3e-16 Identities = 316/488 (65%), Gaps = 9/488 (2%) Strand=Plus/Plus Query 74784 ATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGAT- 74842 |||| || || || || | || || ||||| || ||||||||||||| ||||||||| Sbjct 12208070 ATCAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTTCTTCAGCCAAAAGATC 12208129 Query 74843 --GGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGT 74900 |||| || | ||||| |||||||| ||||| || ||||||||| | || || Sbjct 12208130 GAGGCAAAGCTG---CCACTAAAGAAGATTCCTTCCACGGCCGCAAAGGCAATAATACGC 12208186 Query 74901 TGCGCGAACGGTGCA---TCGGAAGTCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTG 74957 | || || || | || | ||||| | | ||||| || || || || || Sbjct 12208187 TCGGCAAAGTTGGCCGATTTCGAGGATATCCAGGACATGGCCCAGTCCGCCTTGCGCTTT 12208246 Query 74958 ACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACG 75017 || || || | || || || || | ||| | | | ||| | || ||| | | Sbjct 12208247 ACAGCCGGCATGGTCTCAATAGCATTGAACAAGTAGTCGCGCTCCTGCGGCTCCCGTATG 12208306 Query 75018 AGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTAC 75077 ||||||| | | |||| |||| || || | ||| || |||| | Sbjct 12208307 TAGGTGTCAATGAGCACGCTGTACATCTCGGAGTGCACATTCTCCATGGCTATCTGGAAG 12208366 Query 75078 GCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAATTCATGTCGATATTC 75137 ||||||| | || ||||||| ||||| || |||| ||| | | | | |||| Sbjct 12208367 CCGTAGAAGCAACGTGCCTCTGTGATCTGCACCTCCTGACTAAAGCGCTCGACCAGATTC 12208426 Query 75138 TCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGC 75197 || | || |||||||||||||| ||||| || ||||| || |||||||| |||| Sbjct 12208427 TCGTTAACAATGCCGTCCGAGGCAGCGAAGAAGGCCAGCACATGGGAGATAAAGTAGCGC 12208486 Query 75198 TCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACC 75257 || | ||||||||| | |||| ||| || |||| | | ||| | ||| || || Sbjct 12208487 TCGTTGTCAGTGAGACGGGCCCAGTCCGTCGCGTCCTTTGATAGATCCACCTCTTCCACA 12208546 Query 75258 GTCCAGAA 75265 |||||||| Sbjct 12208547 GTCCAGAA 12208554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547183235442000