Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017
65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq15 165 9e-36
seq10 100 3e-16
>seq15
Length=6594820
Score = 165 bits (182), Expect = 9e-36
Identities = 306/449 (68%), Gaps = 0/449 (0%)
Strand=Plus/Minus
Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211
||||| ||||| ||||| || || |||| ||||| |||||| | || || | || ||
Sbjct 6046015 CCAGTGCCGATGCCCTCGGCTCCGTTCACCAGAACCATCGGTATGATGGGCAGATACCAC 6045956
Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCGGA 117271
||||| | | | | || ||||| || ||||| |||| || || ||| ||
Sbjct 6045955 AATGGCTCGATCCTCTGGCCATCGTCGGTCTGGTACTCCAGCAGCGGATCGTCCAGGGGG 6045896
Query 117272 TCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCA 117331
| | | ||| ||| ||| | | | |||||||||||||||| ||| |||
Sbjct 6045895 TGGTAGATGAGGCGCGTCAGCGGCGACATCAGTGTGAAAATGTAACGAGCGCTGGCACAG 6045836
Query 117332 TCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTG 117391
|||||||| || | || || |||||||| || || | |||||||| | ||| | ||||
Sbjct 6045835 TCCTTGCCGCCCGTCAGCCGAGTACCGAACTGACCGCGCGGCTCCAGCAAGTTTATGTTG 6045776
Query 117392 TTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCA 117451
|| | || || |||| || |||| || || || || |||||| |||| ||
Sbjct 6045775 TTCGAACCAACGTAGTTCTGGGCCAGATTCACGATAGTCATCTGGAGGGAGACCTCGCCG 6045716
Query 117452 TGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGAC 117511
||||| || |||| | |||||||||| |||| | |||||| |||||||| | || |
Sbjct 6045715 TGGTGGTAGGCCGACATCTCCGCCACGGAGCCAGACAGCTGGGCCACCTTTACCTCGCGC 6045656
Query 117512 GTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATCC 117571
| ||| ||||| ||| | | || ||||||||||| | |||||||| ||||||
Sbjct 6045655 TTGTCGTTGCGCTTGAAGCAAGTGAACATGACCTTGCGCTGGCCCGGCTTCAGGCCATCC 6045596
Query 117572 GCCACGTGAGGGATCGAACGCTTGATGTC 117600
||| | ||||| || |||| | ||||
Sbjct 6045595 ACCAGGCTGGGGATGGAGCGCTCGTTGTC 6045567
Score = 122 bits (134), Expect = 1e-22
Identities = 301/453 (66%), Gaps = 4/453 (1%)
Strand=Plus/Minus
Query 151874 ATCCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAA 151933
|||| || ||||||||||| || ||||| ||||||| |||||| | || || ||
Sbjct 6046017 ATCCAGTGCCGATGCCCTCGGCTCCGTTCACCAGAACCATCGGTATGATGGGCAGATACC 6045958
Query 151934 ACTCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCG 151993
|| ||||| | | || || || || || ||| | || | | || ||| |
Sbjct 6045957 ACAATGGCTCGATCCTCTGGCCATCGTCGGTCTGGTACTCCAGCAGCGGATCGTCCAGGG 6045898
Query 151994 GATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCG 152053
| | | | || | || |||| || || | ||||| ||||| || | ||||||
Sbjct 6045897 GGTGGTAGATGAGGCGCGTCAGCGGCGACATCAGTGTGAAAATGTAACGAGCGCTGGCAC 6045838
Query 152054 CATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGT 152113
|||||||| || | |||||| || || ||||| || ||||| || | ||| | ||
Sbjct 6045837 AGTCCTTGCCGCCCGTCAGCCGAGTACCGAACTGACCGCGCGGCTCCAGCAAGTTTATGT 6045778
Query 152114 TGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCAC 152173
|||| | || ||| | ||||| |||| |||||| || || ||| || | || |
Sbjct 6045777 TGTTCGAACCAACGTAGTTCTGGGCCAGATTCACGATAGTCATCTGGAGGGAGACCTCGC 6045718
Query 152174 CGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTC-C 152232
||||||| || |||| | |||||| | | | || | || ||| |||||||| | || |
Sbjct 6045717 CGTGGTGGTAGGCCGACATCTCCGCCACGGAGCCAGACAGCTGGGCCACCTTTACCTCGC 6045658
Query 152233 G-TCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACC 152291
| | ||| ||| ||||| || | | | || |||||||||||| || |||| ||
Sbjct 6045657 GCTTGTC--GTTGCGCTTGAAGCAAGTGAACATGACCTTGCGCTGGCCCGGCTTCAGGCC 6045600
Query 152292 GTCCACCACGTGAGGAATCGAACGCTTGATGTC 152324
||||||| | || || || |||| | ||||
Sbjct 6045599 ATCCACCAGGCTGGGGATGGAGCGCTCGTTGTC 6045567
Score = 113 bits (124), Expect = 5e-20
Identities = 220/319 (69%), Gaps = 17/319 (5%)
Strand=Plus/Plus
Query 158939 CAATAAACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGG 158998
||| |||||| || | |||||||||||||| || ||||||||| ||||| ||| | |
Sbjct 1495128 CAACAAACTCACGTACACTGTGCGTCTCTCCGGTGGCAATCACATAGTCCGATGGGCTGT 1495187
Query 158999 GCTGTTGGAGCATGAGCCACATGGCCTCGACGTAATC-CTGCGCGTGACCCCAGTCGCGC 159057
| || | ||| | |||||| ||||| |||||||| ||| ||||| ||||| || |||
Sbjct 1495188 CGCGCTGCAACATCATCCACATTGCCTCCACGTAATCACTG-GCGTGGCCCCAATCCCGC 1495246
Query 159058 TTGGCATCCATGTTCCCGAGCTCGATGACTTTTCCAGACTTTTTCCA-------CTCAGC 159110
|| | ||| | ||| |||||||| | | | |||| | || | || || ||
Sbjct 1495247 TTCGAATCTAAGTTTCCGAGCTCAA--AGTATTCC--ATTTGGTTCAGGAGAATCTTTGC 1495302
Query 159111 CAGACCGAGCGTGATCTTGCGCGTCACAAACTCTGCTCCGCGCCGTTCCGA--CTCATGG 159168
|| | |||| ||||| | || ||||| | ||||||||| || || ||| |||
Sbjct 1495303 CACGCTTCGCGTTATCTTTCTGGTAACAAAATTCTCTCCGCGCC--TCGGACTCTCGTGG 1495360
Query 159169 TTAAACAGAATGCCGGTACAAGCGAACAGGTTATAGGACTCGCGGTAATTTTTAGTTATC 159228
||||| || || || | || ||| ||| || |||| ||| | ||| || | ||||
Sbjct 1495361 TTAAAGAGGATTCCATTGCAGGCGTACATATTGTAGGCCTCCCTGTAGTTGATGACTATC 1495420
Query 159229 CAGTATCCAAAGAGCTTGG 159247
|| | ||| | | |||||
Sbjct 1495421 CAAAAACCATACATCTTGG 1495439
Score = 84.2 bits (92), Expect = 2e-11
Identities = 108/147 (73%), Gaps = 4/147 (3%)
Strand=Plus/Plus
Query 124486 CCTCGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCT--TCGGG 124543
|||| | ||||||||| | ||||||||||| || ||| ||||||| | || | ||
Sbjct 1495125 CCTCAACAAACTCACGTACACTGTGCGTCTCTCCGGTGGCAATCACATAGTCCGATGGGC 1495184
Query 124544 AATCGACTGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTC 124603
||| |||||||||| | |||||| || | ||||| || ||||| ||||| ||
Sbjct 1495185 TGTCGC--GCTGCAACATCATCCACATTGCCTCCACGTAATCACTGGCGTGGCCCCAATC 1495242
Query 124604 GCGCTTGGCATCCAGGTTTCCGAGCTC 124630
||||| | ||| | ||||||||||||
Sbjct 1495243 CCGCTTCGAATCTAAGTTTCCGAGCTC 1495269
>seq10
Length=19787792
Score = 100 bits (110), Expect = 3e-16
Identities = 316/488 (65%), Gaps = 9/488 (2%)
Strand=Plus/Plus
Query 74784 ATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGAT- 74842
|||| || || || || | || || ||||| || ||||||||||||| |||||||||
Sbjct 12208070 ATCAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTTCTTCAGCCAAAAGATC 12208129
Query 74843 --GGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGT 74900
|||| || | ||||| |||||||| ||||| || ||||||||| | || ||
Sbjct 12208130 GAGGCAAAGCTG---CCACTAAAGAAGATTCCTTCCACGGCCGCAAAGGCAATAATACGC 12208186
Query 74901 TGCGCGAACGGTGCA---TCGGAAGTCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTG 74957
| || || || | || | ||||| | | ||||| || || || || ||
Sbjct 12208187 TCGGCAAAGTTGGCCGATTTCGAGGATATCCAGGACATGGCCCAGTCCGCCTTGCGCTTT 12208246
Query 74958 ACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACG 75017
|| || || | || || || || | ||| | | | ||| | || ||| | |
Sbjct 12208247 ACAGCCGGCATGGTCTCAATAGCATTGAACAAGTAGTCGCGCTCCTGCGGCTCCCGTATG 12208306
Query 75018 AGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTAC 75077
||||||| | | |||| |||| || || | ||| || |||| |
Sbjct 12208307 TAGGTGTCAATGAGCACGCTGTACATCTCGGAGTGCACATTCTCCATGGCTATCTGGAAG 12208366
Query 75078 GCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAATTCATGTCGATATTC 75137
||||||| | || ||||||| ||||| || |||| ||| | | | | ||||
Sbjct 12208367 CCGTAGAAGCAACGTGCCTCTGTGATCTGCACCTCCTGACTAAAGCGCTCGACCAGATTC 12208426
Query 75138 TCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGC 75197
|| | || |||||||||||||| ||||| || ||||| || |||||||| ||||
Sbjct 12208427 TCGTTAACAATGCCGTCCGAGGCAGCGAAGAAGGCCAGCACATGGGAGATAAAGTAGCGC 12208486
Query 75198 TCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACC 75257
|| | ||||||||| | |||| ||| || |||| | | ||| | ||| || ||
Sbjct 12208487 TCGTTGTCAGTGAGACGGGCCCAGTCCGTCGCGTCCTTTGATAGATCCACCTCTTCCACA 12208546
Query 75258 GTCCAGAA 75265
||||||||
Sbjct 12208547 GTCCAGAA 12208554
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547183235442000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |