Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq6 143 2e-29 seq3 104 1e-17 seq4631 91.5 9e-14 >seq6 Length=9197557 Score = 143 bits (158), Expect = 2e-29 Identities = 167/223 (75%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||||||||||||||| |||||| || ||||| || || ||||| || || Sbjct 544144 AGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGG 544203 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || ||||| || ||||| || || | |||||| ||||| || || | ||||||| Sbjct 544204 CCATCCTCCAGTTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCC 544263 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || ||| | ||| ||||| |||||| |||| ||| Sbjct 544264 TTGTCCTGGATC-TTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGT 544322 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || ||||| || || || ||||||||||| |||||||| ||| Sbjct 544323 GATGGTTTTTCCAGTCAAGGTTTTCACAAAGATCTGCATTTTG 544365 Score = 136 bits (150), Expect = 2e-27 Identities = 163/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||||||||||||||| |||||| || ||||| || || ||||| || || Sbjct 542548 AGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGG 542607 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || ||||| || || | |||||| ||||| || || | ||||||| Sbjct 542608 CCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGATTCCCTCC 542667 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || ||| | ||| ||||| |||||| |||| ||| Sbjct 542668 TTGTCCTGGATC-TTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGT 542726 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||| ||||| || ||||||||||| || ||||| Sbjct 542727 GATGGTTTTTCCGGTCAAGGTTTTCACAAAGATTTGCAT 542765 Score = 136 bits (150), Expect = 2e-27 Identities = 163/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||||||||||||||| |||||| || ||||| || || ||||| || || Sbjct 543688 AGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGG 543747 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || ||||| || || | |||||| ||||| || || | ||||||| Sbjct 543748 CCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGATTCCCTCC 543807 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || ||| | ||| ||||| |||||| |||| ||| Sbjct 543808 TTGTCCTGGATC-TTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGT 543866 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||| ||||| || ||||||||||| || ||||| Sbjct 543867 GATGGTTTTTCCGGTCAAGGTTTTCACAAAGATTTGCAT 543905 Score = 136 bits (150), Expect = 2e-27 Identities = 163/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||||||||||||||| |||||| || ||||| || || ||||| || || Sbjct 543916 AGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGG 543975 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || ||||| || || | |||||| ||||| || || | ||||||| Sbjct 543976 CCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGAGGGATTCCCTCC 544035 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || ||| | ||| ||||| |||||| |||| ||| Sbjct 544036 TTGTCCTGGATC-TTGGCCTTTACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGT 544094 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||| ||||| || ||||||||||| || ||||| Sbjct 544095 GATGGTTTTTCCGGTCAAGGTTTTCACAAAGATTTGCAT 544133 Score = 131 bits (144), Expect = 1e-25 Identities = 162/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||||||| ||||| |||||| || ||||| || || ||||| || || Sbjct 542776 AGACGAAGCACCAAATGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGG 542835 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || ||||| || || | |||||| ||||| || || | ||||||| Sbjct 542836 CCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCC 542895 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || ||| | ||| ||||| |||||| |||| ||| Sbjct 542896 TTGTCCTGGATC-TTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGT 542954 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||| ||||| || |||||||||||||| ||||| Sbjct 542955 GATGGTTTTTCCGGTCAAGGTTTTCACAAAAATTTGCAT 542993 Score = 131 bits (144), Expect = 1e-25 Identities = 162/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||||||| ||||| |||||| || ||||| || || ||||| || || Sbjct 543232 AGACGAAGCACCAAATGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGG 543291 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || ||||| || || | |||||| ||||| || || | ||||||| Sbjct 543292 CCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGATTCCCTCC 543351 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || ||| | ||| ||||| |||||| |||| ||| Sbjct 543352 TTGTCCTGGATC-TTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGT 543410 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||| ||||| || |||||||||||||| ||||| Sbjct 543411 GATGGTTTTTCCGGTCAAGGTTTTCACAAAAATTTGCAT 543449 Score = 127 bits (140), Expect = 1e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||||||| ||||| |||||| || ||||| || || ||||| || || Sbjct 543004 AGACGAAGCACCAAATGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGG 543063 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || ||||| || || | |||||| ||||| || || | ||||||| Sbjct 543064 CCATCCTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCC 543123 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || ||| | ||| ||||| |||||| |||| ||| Sbjct 543124 TTGTCCTGGATC-TTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGT 543182 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||| ||||| || ||||||||||| || ||||| Sbjct 543183 GATGGTTTTTCCGGTCAAGGTTTTCACAAAGATTTGCAT 543221 Score = 122 bits (134), Expect = 5e-23 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||||||||||||||| |||||| || ||||| || || ||||| || || Sbjct 543460 AGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGG 543519 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || ||||| || || | |||||| ||||| || || | ||||||| Sbjct 543520 CCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGATTCCCTCC 543579 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || ||| | ||| ||||| |||||| |||| ||| Sbjct 543580 TTGTCCTGGATC-TTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGT 543638 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||| || || | || ||||| || |||||||| Sbjct 543639 GATGGTTTTTCCAGTCAGAGTCTTCACGAAGATCTGCAT 543677 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||||||| ||||||||||||||| |||||| || ||||| || || ||| Sbjct 542311 CCGCCACGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAA 542370 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| || || || || || || || | |||||| ||||| || || Sbjct 542371 AGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGG 542430 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| ||| || | ||| ||| | ||| ||||| || || Sbjct 542431 ATTCCCTCCTTGTC-CTGAATCTTGGCTTTCACGTTCTCAATGGTGTCAGAAGGTTCGAC 542489 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||| || ||||| || || | || ||||| ||||| ||||| Sbjct 542490 CTCCAGGGTAATAGTTTTTCCAGTCAGAGTCTTCACGAAAATTTGCAT 542537 >seq3 Length=12541198 Score = 104 bits (114), Expect = 1e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 ||||||| | ||||||||| ||||| || | |||| |||||| || ||||| ||||| | Sbjct 3175937 CGCCGCCACGAAGACGCAATACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAATCGG 3175878 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 | | || || |||| || || || || ||||| || || |||||||| || || || | Sbjct 3175877 ACAAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGG 3175818 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656 | | ||||||||||| |||| || | || || | || ||||| | ||| Sbjct 3175817 GAATGCCCTCCTTGTCCTGGATC-TTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCG 3175759 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || | ||| || || || || || | || || ||||| ||||||||| Sbjct 3175758 ACCTCGAGGGTGATGGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCATG 3175708 Score = 84.2 bits (92), Expect = 1e-11 Identities = 154/223 (69%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || | ||||||||| | ||| |||||| || ||||| ||||| || | || || Sbjct 3174102 AGGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGACAAGGTACGT 3174043 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || ||||| || || |||||||| || || || || | |||||| Sbjct 3174042 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCC 3173983 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || || | || ||||| | ||| || || | ||| Sbjct 3173982 TTGTCCTGGATC-TTGGCCTTGACATTCTCGATGGTGTCCGAGGGCTCAACCTCGAGGGT 3173924 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || || || || || | || ||||| || |||||||| ||| Sbjct 3173923 GATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATTTTG 3173881 Score = 84.2 bits (92), Expect = 1e-11 Identities = 152/220 (69%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || | ||||||||| | ||| |||||| || ||||| ||||| || | || || Sbjct 3174558 AGGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGACAAAGTACGT 3174499 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || ||||| || || |||||||| || || || || | |||||| Sbjct 3174498 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCC 3174439 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || || | || ||||| | ||| || || | ||| Sbjct 3174438 TTGTCCTGGATC-TTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGT 3174380 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || | || || ||||| ||||||||| Sbjct 3174379 GATGGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCATG 3174340 Score = 84.2 bits (92), Expect = 1e-11 Identities = 152/220 (69%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || | ||||||||| | ||| |||||| || ||||| ||||| || | || || Sbjct 3174786 AGGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGACAAAGTACGT 3174727 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || ||||| || || |||||||| || || || || | |||||| Sbjct 3174726 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCC 3174667 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || || | || ||||| | ||| || || | ||| Sbjct 3174666 TTGTCCTGGATC-TTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGT 3174608 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || | || || ||||| ||||||||| Sbjct 3174607 GATGGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCATG 3174568 Score = 84.2 bits (92), Expect = 1e-11 Identities = 152/220 (69%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || | ||||||||| | ||| |||||| || ||||| ||||| || | || || Sbjct 3175470 AGGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGACAAAGTACGT 3175411 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || ||||| || || |||||||| || || || || | |||||| Sbjct 3175410 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCC 3175351 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || || | || ||||| | ||| || || | ||| Sbjct 3175350 TTGTCCTGGATC-TTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGT 3175292 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || | || ||||| || ||||||||| Sbjct 3175291 GATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCATG 3175252 >seq4631 Length=7852 Score = 91.5 bits (100), Expect = 9e-14 Identities = 138/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 |||||| |||||||||||||| || |||||||| | ||||| | ||| || || || || Sbjct 680 CTCCTTCTGAATGTTATAATCAGACAGTGTTCGGCCATCTTCCAATTGCTTGCCAGCGAA 621 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634 || ||||||||||| || || || | ||| || ||||| |||||| ||| | Sbjct 620 GATCAAACGCTGTTGATCTGGAGGAATTCCTTCTTTGTCCTGGATCTTGGCTTTGACATT 561 Query 34635 TAAAATTGTGT-CTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 | || || | | || | || || || | ||||| || || || |||| || || | Sbjct 560 TTCGATGGTATCCGACGGT-TCGACCTCAAGAGTTATGGTCTTGCCCGTTAGGGTCTTTA 502 Query 34694 CAAAAATCTGCATG 34707 |||| ||||||||| Sbjct 501 CAAAGATCTGCATG 488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314711226676070