Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq15 109 5e-19 >seq15 Length=6594820 Score = 109 bits (120), Expect = 5e-19 Identities = 303/465 (65%), Gaps = 6/465 (1%) Strand=Plus/Plus Query 34393 GGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGG 34452 ||| || |||| || ||||| || || |||||| | |||||||| || || ||| || Sbjct 4185530 GGGAGATCTGGGTCCAGTCTATGGCTTTCAGTGGCGCCACTTTGGTGCCGAATATGGGAC 4185589 Query 34453 GAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTT 34512 |||| | ||||| || |||| ||||| ||| | || || |||||| | Sbjct 4185590 TTGCGACGATGACTACAGCGGCAAGGGCATCGACCAATTGCGCCAAGTAATTGACACCAT 4185649 Query 34513 GAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCC 34572 | || || || || | ||||| | |||| ||| ||||| ||| ||| | || Sbjct 4185650 CAGGCATAATCCGTCCGATCGTCGGATCATCATGTCCGCATGGAATCCGCTGGACATACC 4185709 Query 34573 TCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT------GG 34626 ||||| || || || ||||| || || ||||||||| || | || Sbjct 4185710 CAAAATGGCACTTCCGCCCTGCCATTGTCTGGCACAGTTCTACGTCTCGCAGACCCGCGG 4185769 Query 34627 GGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAA 34686 ||||||||||||||| | ||||| || | |||||||| | || ||||| ||||| Sbjct 4185770 AGAGCTGTCCTGCCAGTTGTATCAGCGCAGCGCCGACATGGGCCTTGGCGTGCCATTCAA 4185829 Query 34687 CATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGG 34746 ||| || ||||| ||||| || |||||||| || ||||| || ||| | || Sbjct 4185830 CATCGCCTCCTACGCCCTGCTGACCTACATGATAGCCCATGTAACTGGCTTGAAGACGGG 4185889 Query 34747 GGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCG 34806 || | | || || |||| || || ||| | || || ||||| | || | || Sbjct 4185890 CGACTTTATCCACACCATGGGCGACGCTCATGTGTATCTTAACCATGTTGATCCACTGAA 4185949 Query 34807 GATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAAT 34851 | |||||| |||| |||| || ||||| || |||| || || Sbjct 4185950 GGAGCAGCTGAAACGCAAGCCGCGGCCGTTTCCAAAGCTGAACAT 4185994 Score = 109 bits (120), Expect = 5e-19 Identities = 303/465 (65%), Gaps = 6/465 (1%) Strand=Plus/Minus Query 6494 ATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATG 6553 || || |||| || ||||| || |||| |||| |||||| | || | || | Sbjct 4185994 ATGTTCAGCTTTGGAAACGGCCGCGGCTTGCGTTTCAGCTGCTCCTTCAGTGGATCAACA 4185935 Query 6554 TGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCC 6613 ||||| || || | ||| || || |||| || || | | || || | ||| || Sbjct 4185934 TGGTTAAGATACACATGAGCGTCGCCCATGGTGTGGATAAAGTCGCCCGTCTTCAAGCCA 4185875 Query 6614 ACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCT 6673 ||||| || |||||||| || ||||| ||||| || |||||||| ||||| || Sbjct 4185874 GTTACATGGGCTATCATGTAGGTCAGCAGGGCGTAGGAGGCGATGTTGAATGGCACGCCA 4185815 Query 6674 AACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCC------ATTCGCG 6727 | |||||||| | || ||||| | ||||||||||||||| || | || | Sbjct 4185814 AGGCCCATGTCGGCGCTGCGCTGATACAACTGGCAGGACAGCTCTCCGCGGGTCTGCGAG 4185755 Query 6728 ACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGG 6787 |||||||| || || ||||| || || || ||||| || | ||| ||| Sbjct 4185754 ACGTAGAACTGTGCCAGACAATGGCAGGGCGGAAGTGCCATTTTGGGTATGTCCAGCGGA 4185695 Query 6788 TTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACG 6847 ||||| ||| |||| | ||||| | || || || || | | |||||| || || Sbjct 4185694 TTCCATGCGGACATGATGATCCGACGATCGGACGGATTATGCCTGATGGTGTCAATTACT 4185635 Query 6848 TACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCC 6907 | ||| ||||| |||| || ||||| | |||| || ||| || || Sbjct 4185634 TGGCGCAATTGGTCGATGCCCTTGCCGCTGTAGTCATCGTCGCAAGTCCCATATTCGGCA 4185575 Query 6908 CCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCC 6952 |||||||| | |||||| || || ||||| || |||| || ||| Sbjct 4185574 CCAAAGTGGCGCCACTGAAAGCCATAGACTGGACCCAGATCTCCC 4185530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448235560288800