Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017
65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq15 109 5e-19
>seq15
Length=6594820
Score = 109 bits (120), Expect = 5e-19
Identities = 303/465 (65%), Gaps = 6/465 (1%)
Strand=Plus/Plus
Query 34393 GGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGG 34452
||| || |||| || ||||| || || |||||| | |||||||| || || ||| ||
Sbjct 4185530 GGGAGATCTGGGTCCAGTCTATGGCTTTCAGTGGCGCCACTTTGGTGCCGAATATGGGAC 4185589
Query 34453 GAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTT 34512
|||| | ||||| || |||| ||||| ||| | || || |||||| |
Sbjct 4185590 TTGCGACGATGACTACAGCGGCAAGGGCATCGACCAATTGCGCCAAGTAATTGACACCAT 4185649
Query 34513 GAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCC 34572
| || || || || | ||||| | |||| ||| ||||| ||| ||| | ||
Sbjct 4185650 CAGGCATAATCCGTCCGATCGTCGGATCATCATGTCCGCATGGAATCCGCTGGACATACC 4185709
Query 34573 TCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT------GG 34626
||||| || || || ||||| || || ||||||||| || | ||
Sbjct 4185710 CAAAATGGCACTTCCGCCCTGCCATTGTCTGGCACAGTTCTACGTCTCGCAGACCCGCGG 4185769
Query 34627 GGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAA 34686
||||||||||||||| | ||||| || | |||||||| | || ||||| |||||
Sbjct 4185770 AGAGCTGTCCTGCCAGTTGTATCAGCGCAGCGCCGACATGGGCCTTGGCGTGCCATTCAA 4185829
Query 34687 CATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGG 34746
||| || ||||| ||||| || |||||||| || ||||| || ||| | ||
Sbjct 4185830 CATCGCCTCCTACGCCCTGCTGACCTACATGATAGCCCATGTAACTGGCTTGAAGACGGG 4185889
Query 34747 GGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCG 34806
|| | | || || |||| || || ||| | || || ||||| | || | ||
Sbjct 4185890 CGACTTTATCCACACCATGGGCGACGCTCATGTGTATCTTAACCATGTTGATCCACTGAA 4185949
Query 34807 GATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAAT 34851
| |||||| |||| |||| || ||||| || |||| || ||
Sbjct 4185950 GGAGCAGCTGAAACGCAAGCCGCGGCCGTTTCCAAAGCTGAACAT 4185994
Score = 109 bits (120), Expect = 5e-19
Identities = 303/465 (65%), Gaps = 6/465 (1%)
Strand=Plus/Minus
Query 6494 ATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATG 6553
|| || |||| || ||||| || |||| |||| |||||| | || | || |
Sbjct 4185994 ATGTTCAGCTTTGGAAACGGCCGCGGCTTGCGTTTCAGCTGCTCCTTCAGTGGATCAACA 4185935
Query 6554 TGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCC 6613
||||| || || | ||| || || |||| || || | | || || | ||| ||
Sbjct 4185934 TGGTTAAGATACACATGAGCGTCGCCCATGGTGTGGATAAAGTCGCCCGTCTTCAAGCCA 4185875
Query 6614 ACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCT 6673
||||| || |||||||| || ||||| ||||| || |||||||| ||||| ||
Sbjct 4185874 GTTACATGGGCTATCATGTAGGTCAGCAGGGCGTAGGAGGCGATGTTGAATGGCACGCCA 4185815
Query 6674 AACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCC------ATTCGCG 6727
| |||||||| | || ||||| | ||||||||||||||| || | || |
Sbjct 4185814 AGGCCCATGTCGGCGCTGCGCTGATACAACTGGCAGGACAGCTCTCCGCGGGTCTGCGAG 4185755
Query 6728 ACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGG 6787
|||||||| || || ||||| || || || ||||| || | ||| |||
Sbjct 4185754 ACGTAGAACTGTGCCAGACAATGGCAGGGCGGAAGTGCCATTTTGGGTATGTCCAGCGGA 4185695
Query 6788 TTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACG 6847
||||| ||| |||| | ||||| | || || || || | | |||||| || ||
Sbjct 4185694 TTCCATGCGGACATGATGATCCGACGATCGGACGGATTATGCCTGATGGTGTCAATTACT 4185635
Query 6848 TACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCC 6907
| ||| ||||| |||| || ||||| | |||| || ||| || ||
Sbjct 4185634 TGGCGCAATTGGTCGATGCCCTTGCCGCTGTAGTCATCGTCGCAAGTCCCATATTCGGCA 4185575
Query 6908 CCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCC 6952
|||||||| | |||||| || || ||||| || |||| || |||
Sbjct 4185574 CCAAAGTGGCGCCACTGAAAGCCATAGACTGGACCCAGATCTCCC 4185530
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448235560288800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |