Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq3 105 5e-18 >seq3 Length=12541198 Score = 105 bits (116), Expect = 5e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| || || |||| || ||||| || || || || ||||| || || |||| Sbjct 3175802 GACAAGGAGGGCATTCCCCCAGATCAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAG 3175861 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||| | |||||||||||||||||||| || ||| ||||||||| ||||| ||| Sbjct 3175862 GACGGACGTACTTTGTCCGATTACAACATCCAGAAGGAGTCCACTTTGCACTTGGTATTG 3175921 Query 28003 CGTTTGCGTGGCGGCG 28018 ||| | |||||||||| Sbjct 3175922 CGTCTTCGTGGCGGCG 3175937 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| || || |||| || ||||| || || || || ||||| || || |||| Sbjct 3173978 GACAAGGAGGGCATTCCCCCAGATCAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAG 3174037 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||| | ||||||||||||||||||||| || ||| ||| ||||||||||| | Sbjct 3174038 GACGGACGTACCTTGTCCGATTACAACATCCAGAAGGAGTCCACCTTGCATTTGGTGCTC 3174097 Query 28003 CGTTTGCGTGGCGGC 28017 || |||| || ||| Sbjct 3174098 CGCCTGCGCGGTGGC 3174112 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| || ||||| ||||| || ||| || | || ||||| | | Sbjct 3174113 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACTATCACCCTCGAGGTCGAGCCCTCG 3174172 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| ||||| || || ||||| || || |||| || | Sbjct 3174173 GACACCATCGAGAAT--GTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATC 3174230 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || || || || ||||| || || |||| |||| ||| | |||||||| |||| Sbjct 3174231 AGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGACTACA 3174290 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||| || ||| ||| ||||||||||| | || |||| || ||| Sbjct 3174291 ACATCCAGAAGGAGTCCACCTTGCATTTGGTGCTCCGCCTGCGCGGTGGC 3174340 Score = 86.0 bits (94), Expect = 4e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| || || |||| || ||||| || || || || ||||| || || |||| Sbjct 3174434 GACAAGGAGGGCATTCCCCCAGATCAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAG 3174493 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||| | |||||||||||||||||||| || ||| ||| ||||||||||| | Sbjct 3174494 GACGGACGTACTTTGTCCGATTACAACATCCAGAAGGAGTCCACCTTGCATTTGGTGCTC 3174553 Query 28003 CGTTTGCGTGGCGGC 28017 || |||| || ||| Sbjct 3174554 CGCCTGCGCGGTGGC 3174568 Score = 86.0 bits (94), Expect = 4e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| || || |||| || ||||| || || || || ||||| || || |||| Sbjct 3174662 GACAAGGAGGGCATTCCCCCAGATCAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAG 3174721 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||| | |||||||||||||||||||| || ||| ||| ||||||||||| | Sbjct 3174722 GACGGACGTACTTTGTCCGATTACAACATCCAGAAGGAGTCCACCTTGCATTTGGTGCTC 3174781 Query 28003 CGTTTGCGTGGCGGC 28017 || |||| || ||| Sbjct 3174782 CGCCTGCGCGGTGGC 3174796 Score = 86.0 bits (94), Expect = 4e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| || || |||| || ||||| || || || || ||||| || || |||| Sbjct 3175346 GACAAGGAGGGCATTCCCCCAGATCAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAG 3175405 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||| | |||||||||||||||||||| || ||| ||| ||||||||||| | Sbjct 3175406 GACGGACGTACTTTGTCCGATTACAACATCCAGAAGGAGTCCACCTTGCATTTGGTGCTC 3175465 Query 28003 CGTTTGCGTGGCGGC 28017 || |||| || ||| Sbjct 3175466 CGCCTGCGCGGTGGC 3175480 Score = 82.4 bits (90), Expect = 5e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| || || |||| || ||||| || || || || ||||| || || |||| Sbjct 3174890 GACAAGGAGGGCATTCCCCCAGATCAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAG 3174949 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||| | |||||||| ||||||||||| || ||| ||| ||||||||||| | Sbjct 3174950 GACGGACGTACTTTGTCCGACTACAACATCCAGAAGGAGTCCACCTTGCATTTGGTGCTC 3175009 Query 28003 CGTTTGCGTGGCGGC 28017 || |||| || ||| Sbjct 3175010 CGCCTGCGCGGTGGC 3175024 Score = 82.4 bits (90), Expect = 5e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| || || |||| || ||||| || || || || ||||| || || |||| Sbjct 3175574 GACAAGGAGGGCATTCCCCCAGATCAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAG 3175633 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||| | |||||||| ||||||||||| || ||| ||| ||||||||||| | Sbjct 3175634 GACGGACGTACTTTGTCCGACTACAACATCCAGAAGGAGTCCACCTTGCATTTGGTGCTC 3175693 Query 28003 CGTTTGCGTGGCGGC 28017 || |||| || ||| Sbjct 3175694 CGCCTGCGCGGTGGC 3175708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355841625420330