Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017
65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq3 105 5e-18
>seq3
Length=12541198
Score = 105 bits (116), Expect = 5e-18
Identities = 105/136 (77%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
||||| || || |||| || ||||| || || || || ||||| || || ||||
Sbjct 3175802 GACAAGGAGGGCATTCCCCCAGATCAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAG 3175861
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|||| ||| | |||||||||||||||||||| || ||| ||||||||| ||||| |||
Sbjct 3175862 GACGGACGTACTTTGTCCGATTACAACATCCAGAAGGAGTCCACTTTGCACTTGGTATTG 3175921
Query 28003 CGTTTGCGTGGCGGCG 28018
||| | ||||||||||
Sbjct 3175922 CGTCTTCGTGGCGGCG 3175937
Score = 91.5 bits (100), Expect = 1e-13
Identities = 101/135 (75%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
||||| || || |||| || ||||| || || || || ||||| || || ||||
Sbjct 3173978 GACAAGGAGGGCATTCCCCCAGATCAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAG 3174037
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|||| ||| | ||||||||||||||||||||| || ||| ||| ||||||||||| |
Sbjct 3174038 GACGGACGTACCTTGTCCGATTACAACATCCAGAAGGAGTCCACCTTGCATTTGGTGCTC 3174097
Query 28003 CGTTTGCGTGGCGGC 28017
|| |||| || |||
Sbjct 3174098 CGCCTGCGCGGTGGC 3174112
Score = 86.0 bits (94), Expect = 4e-12
Identities = 158/230 (69%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| || ||||| || ||||| ||||| || ||| || | || ||||| | |
Sbjct 3174113 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACTATCACCCTCGAGGTCGAGCCCTCG 3174172
Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
||| || | ||| ||||| || || ||||| || || |||| || |
Sbjct 3174173 GACACCATCGAGAAT--GTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATC 3174230
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
|||| || || || || ||||| || || |||| |||| ||| | |||||||| ||||
Sbjct 3174231 AGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGACTACA 3174290
Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017
||||||| || ||| ||| ||||||||||| | || |||| || |||
Sbjct 3174291 ACATCCAGAAGGAGTCCACCTTGCATTTGGTGCTCCGCCTGCGCGGTGGC 3174340
Score = 86.0 bits (94), Expect = 4e-12
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
||||| || || |||| || ||||| || || || || ||||| || || ||||
Sbjct 3174434 GACAAGGAGGGCATTCCCCCAGATCAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAG 3174493
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|||| ||| | |||||||||||||||||||| || ||| ||| ||||||||||| |
Sbjct 3174494 GACGGACGTACTTTGTCCGATTACAACATCCAGAAGGAGTCCACCTTGCATTTGGTGCTC 3174553
Query 28003 CGTTTGCGTGGCGGC 28017
|| |||| || |||
Sbjct 3174554 CGCCTGCGCGGTGGC 3174568
Score = 86.0 bits (94), Expect = 4e-12
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
||||| || || |||| || ||||| || || || || ||||| || || ||||
Sbjct 3174662 GACAAGGAGGGCATTCCCCCAGATCAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAG 3174721
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|||| ||| | |||||||||||||||||||| || ||| ||| ||||||||||| |
Sbjct 3174722 GACGGACGTACTTTGTCCGATTACAACATCCAGAAGGAGTCCACCTTGCATTTGGTGCTC 3174781
Query 28003 CGTTTGCGTGGCGGC 28017
|| |||| || |||
Sbjct 3174782 CGCCTGCGCGGTGGC 3174796
Score = 86.0 bits (94), Expect = 4e-12
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
||||| || || |||| || ||||| || || || || ||||| || || ||||
Sbjct 3175346 GACAAGGAGGGCATTCCCCCAGATCAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAG 3175405
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|||| ||| | |||||||||||||||||||| || ||| ||| ||||||||||| |
Sbjct 3175406 GACGGACGTACTTTGTCCGATTACAACATCCAGAAGGAGTCCACCTTGCATTTGGTGCTC 3175465
Query 28003 CGTTTGCGTGGCGGC 28017
|| |||| || |||
Sbjct 3175466 CGCCTGCGCGGTGGC 3175480
Score = 82.4 bits (90), Expect = 5e-11
Identities = 99/135 (73%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
||||| || || |||| || ||||| || || || || ||||| || || ||||
Sbjct 3174890 GACAAGGAGGGCATTCCCCCAGATCAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAG 3174949
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|||| ||| | |||||||| ||||||||||| || ||| ||| ||||||||||| |
Sbjct 3174950 GACGGACGTACTTTGTCCGACTACAACATCCAGAAGGAGTCCACCTTGCATTTGGTGCTC 3175009
Query 28003 CGTTTGCGTGGCGGC 28017
|| |||| || |||
Sbjct 3175010 CGCCTGCGCGGTGGC 3175024
Score = 82.4 bits (90), Expect = 5e-11
Identities = 99/135 (73%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
||||| || || |||| || ||||| || || || || ||||| || || ||||
Sbjct 3175574 GACAAGGAGGGCATTCCCCCAGATCAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAG 3175633
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|||| ||| | |||||||| ||||||||||| || ||| ||| ||||||||||| |
Sbjct 3175634 GACGGACGTACTTTGTCCGACTACAACATCCAGAAGGAGTCCACCTTGCATTTGGTGCTC 3175693
Query 28003 CGTTTGCGTGGCGGC 28017
|| |||| || |||
Sbjct 3175694 CGCCTGCGCGGTGGC 3175708
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355841625420330
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |