Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017
65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq6 104 2e-17
seq12 84.2 2e-11
>seq6
Length=9197557
Score = 104 bits (114), Expect = 2e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
||||||||| || || ||| || || || || || || | ||| || || | || ||
Sbjct 542556 CACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTC 542615
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
||||| ||||| || || || |||||||||||||| | ||| | | ||| ||||||
Sbjct 542616 CAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTG 542675
Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254
||| || || | || | | || ||| | |||||| |||| ||||| ||||
Sbjct 542676 GATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGTGATGGTTTT 542735
Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
||| |||| ||||| ||||||||||||||
Sbjct 542736 TCCGGTCAAGGTTTTCACAAAGATTTGCAT 542765
Score = 104 bits (114), Expect = 2e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
||||||||| || || ||| || || || || || || | ||| || || | || ||
Sbjct 543696 CACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTC 543755
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
||||| ||||| || || || |||||||||||||| | ||| | | ||| ||||||
Sbjct 543756 CAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTG 543815
Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254
||| || || | || | | || ||| | |||||| |||| ||||| ||||
Sbjct 543816 GATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGTGATGGTTTT 543875
Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
||| |||| ||||| ||||||||||||||
Sbjct 543876 TCCGGTCAAGGTTTTCACAAAGATTTGCAT 543905
Score = 100 bits (110), Expect = 2e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
||||||||| || || ||| || || || || || || | ||| || || | || ||
Sbjct 542784 CACCAAATGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTC 542843
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
||||| ||||| || || || |||||||||||||| | ||| | | ||| ||||||
Sbjct 542844 CAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTG 542903
Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254
||| || || | || | | || ||| | |||||| |||| ||||| ||||
Sbjct 542904 GATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGTGATGGTTTT 542963
Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
||| |||| ||||| ||||| ||||||||
Sbjct 542964 TCCGGTCAAGGTTTTCACAAAAATTTGCAT 542993
Score = 100 bits (110), Expect = 2e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
||||||||| || || ||| || || || || || || | ||| || || | || ||
Sbjct 543012 CACCAAATGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTC 543071
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
||||| || || || || || |||||||||||||| | ||| | | ||| ||||||
Sbjct 543072 CAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTG 543131
Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254
||| || || | || | | || ||| | |||||| |||| ||||| ||||
Sbjct 543132 GATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGTGATGGTTTT 543191
Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
||| |||| ||||| ||||||||||||||
Sbjct 543192 TCCGGTCAAGGTTTTCACAAAGATTTGCAT 543221
Score = 100 bits (110), Expect = 2e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
||||||||| || || ||| || || || || || || | ||| || || | || ||
Sbjct 543240 CACCAAATGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTC 543299
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
||||| ||||| || || || |||||||||||||| | ||| | | ||| ||||||
Sbjct 543300 CAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTG 543359
Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254
||| || || | || | | || ||| | |||||| |||| ||||| ||||
Sbjct 543360 GATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGTGATGGTTTT 543419
Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
||| |||| ||||| ||||| ||||||||
Sbjct 543420 TCCGGTCAAGGTTTTCACAAAAATTTGCAT 543449
Score = 100 bits (110), Expect = 2e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
||||||||| || || ||| || || || || || || | ||| || || | || ||
Sbjct 543924 CACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCCTC 543983
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
||||| ||||| || || || |||||||||||||| | || | | ||| ||||||
Sbjct 543984 CAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCCTG 544043
Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254
||| || || | || | | || ||| | |||||| |||| ||||| ||||
Sbjct 544044 GATCTTGGCCTTTACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGTGATGGTTTT 544103
Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
||| |||| ||||| ||||||||||||||
Sbjct 544104 TCCGGTCAAGGTTTTCACAAAGATTTGCAT 544133
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
||||||||| || || ||| || || || || || || | ||| || || | || ||
Sbjct 544152 CACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTC 544211
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
|| || ||||| || || || |||||||||||||| | ||| | | ||| ||||||
Sbjct 544212 CAGTTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTG 544271
Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254
||| || || | || | | || ||| | |||||| |||| ||||| ||||
Sbjct 544272 GATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGTGATGGTTTT 544331
Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287
||| |||| ||||| |||||||| ||||| ||
Sbjct 544332 TCCAGTCAAGGTTTTCACAAAGATCTGCATTTT 544364
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
||||||||| || || ||| || || || || || || | ||| || || | || ||
Sbjct 543468 CACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTC 543527
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
||||| ||||| || || || |||||||||||||| | ||| | | ||| ||||||
Sbjct 543528 CAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTG 543587
Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254
||| || || | || | | || ||| | |||||| |||| ||||| ||||
Sbjct 543588 GATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGTGATGGTTTT 543647
Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
||| ||||| || || || ||||| |||||
Sbjct 543648 TCCAGTCAGAGTCTTCACGAAGATCTGCAT 543677
Score = 82.4 bits (90), Expect = 7e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
||||||||| || || ||| || || || || || || | ||| || || | || ||
Sbjct 542328 CACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCTTC 542387
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
||||| ||||| || || || |||||||||||||| | ||| | | ||| ||||||
Sbjct 542388 CAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTG 542447
Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254
|| || ||| | || | | || || | || || |||| || ||| ||||
Sbjct 542448 AATCTTGGCTTTCACGTTCTCAATGGTGTCAGAAGGTTCGACCTCCAGGGTAATAGTTTT 542507
Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
||| ||||| || || || || ||||||||
Sbjct 542508 TCCAGTCAGAGTCTTCACGAAAATTTGCAT 542537
>seq12
Length=1235759
Score = 84.2 bits (92), Expect = 2e-11
Identities = 150/219 (68%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128
||| | |||||| || || || ||| || || || || || |||| || || || |
Sbjct 219383 GCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCC 219324
Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188
|| || ||||| ||||| || || || ||||||||||| || | ||| | || ||| ||
Sbjct 219323 ATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTT 219264
Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248
|||| ||| || |||| || | | || || | ||| || |||| |||||
Sbjct 219263 GTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGAT 219204
Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287
| || || || || ||||| || ||||||||||| ||
Sbjct 219203 GGTCTTGCCAGTGAGAGTTTTCACGAAGATTTGCATTTT 219165
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429520523933270
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