Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq3 138 8e-28 seq4631 111 1e-19 seq6 98.7 7e-16 >seq3 Length=12541198 Score = 138 bits (152), Expect = 8e-28 Identities = 160/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| || ||||| || || || || ||||| ||||| ||||| || Sbjct 3173882 AAAATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCC 3173941 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 ||||||| | || ||| | || | || | | ||||| || || | || ||||| Sbjct 3173942 TCGGACACCATCGAGAATGTCAAGGCCAAGA-TCCAGGACAAGGAGGGCATTCCCCCAGA 3174000 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| |||||||| || || |||||||| || ||||| |||| ||| || || |||||| Sbjct 3174001 TCAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACCTTGTCCGATTA 3174060 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGT 23819 |||||| || || |||||||| || ||||| || Sbjct 3174061 CAACATCCAGAAGGAGTCCACCTTGCATTTGGT 3174093 Score = 129 bits (142), Expect = 4e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || || || || || || ||||| ||||| || || || || Sbjct 3175253 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCTCG 3175312 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | ||||| || || | || |||||||| Sbjct 3175313 GACACCATCGAGAATGTCAAGGCTAAGA-TCCAGGACAAGGAGGGCATTCCCCCAGATCA 3175371 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||||| || || |||||||| || ||||| |||| ||| ||||| ||||||||| Sbjct 3175372 GCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGATTACAA 3175431 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| || || |||||||| || ||||| || Sbjct 3175432 CATCCAGAAGGAGTCCACCTTGCATTTGGT 3175461 Score = 123 bits (136), Expect = 2e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || || || || || || ||||| ||||| || || || || Sbjct 3174341 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCTCG 3174400 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | ||||| || || | || |||||||| Sbjct 3174401 GACACCATCGAGAATGTCAAGGCTAAGA-TCCAGGACAAGGAGGGCATTCCCCCAGATCA 3174459 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||||| || || |||||||| || ||||| |||| ||| ||||| ||||||||| Sbjct 3174460 GCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGATTACAA 3174519 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| || || |||||||| || ||||| || Sbjct 3174520 CATCCAGAAGGAGTCCACCTTGCATTTGGT 3174549 Score = 123 bits (136), Expect = 2e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || || || || || || ||||| ||||| || || || || Sbjct 3174569 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCTCG 3174628 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | ||||| || || | || |||||||| Sbjct 3174629 GACACCATCGAGAATGTCAAGGCTAAGA-TCCAGGACAAGGAGGGCATTCCCCCAGATCA 3174687 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||||| || || |||||||| || ||||| |||| ||| ||||| ||||||||| Sbjct 3174688 GCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGATTACAA 3174747 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| || || |||||||| || ||||| || Sbjct 3174748 CATCCAGAAGGAGTCCACCTTGCATTTGGT 3174777 Score = 120 bits (132), Expect = 2e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || || || || || || ||||| ||||| || || || || Sbjct 3175709 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCTCG 3175768 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | ||||| || || | || |||||||| Sbjct 3175769 GACACCATCGAGAATGTCAAGGCTAAGA-TCCAGGACAAGGAGGGCATTCCCCCAGATCA 3175827 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||||| || || |||||||| || ||||| |||| ||| ||||| ||||||||| Sbjct 3175828 GCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGATTACAA 3175887 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 ||| || || |||||||| || || || || || Sbjct 3175888 CATCCAGAAGGAGTCCACTTTGCACTTGGTATT 3175920 >seq4631 Length=7852 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| ||||| || || || ||||| || || || | || Sbjct 489 ATGCAGATCTTTGTAAAGACCCTAACGGGCAAGACCATAACTCTTGAGGTCGAACCGTCG 548 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | |||| | ||| || || ||||||||||| | || ||||||||| Sbjct 549 GATACCATCGAAAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGATCAA 608 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||||| || || || ||||| ||| ||||||| | || || | ||||| ||| Sbjct 609 CAGCGTTTGATCTTCGCTGGCAAGCAATTGGAAGATGGCCGAACACTGTCTGATTATAAC 668 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || || || ||||| || || |||||||| Sbjct 669 ATTCAGAAGGAGTCTACCTTGCATTTAGT 697 >seq6 Length=9197557 Score = 98.7 bits (108), Expect = 7e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| || || |||||| | || |||||||| ||||| || || || || | Sbjct 544364 AAAATGCAGATCTTTGTGAAAACCTTGACTGGAAAAACCATCACCCTGGAGGTGGAGCCA 544305 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| |||| | | || || || ||||| || || | || ||||| Sbjct 544304 TCCGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGAC 544245 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || |||||| | || || |||||||| |||||||| || | |||||| | || ||| Sbjct 544244 CAGCAGCGTCTCATCTTCGCCGGCAAGCAACTGGAGGATGGCCGCACTCTTTCGGACTAC 544185 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGT 23819 ||||| || || ||||| || | ||||| || Sbjct 544184 AACATCCAGAAGGAGTCGACTCTCCATTTGGT 544153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337989867633320