Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017
65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq3 138 8e-28
seq4631 111 1e-19
seq6 98.7 7e-16
>seq3
Length=12541198
Score = 138 bits (152), Expect = 8e-28
Identities = 160/213 (75%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
||||||||||| ||||| || ||||| || || || || ||||| ||||| ||||| ||
Sbjct 3173882 AAAATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCC 3173941
Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726
||||||| | || ||| | || | || | | ||||| || || | || |||||
Sbjct 3173942 TCGGACACCATCGAGAATGTCAAGGCCAAGA-TCCAGGACAAGGAGGGCATTCCCCCAGA 3174000
Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786
||| |||||||| || || |||||||| || ||||| |||| ||| || || ||||||
Sbjct 3174001 TCAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACCTTGTCCGATTA 3174060
Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGT 23819
|||||| || || |||||||| || ||||| ||
Sbjct 3174061 CAACATCCAGAAGGAGTCCACCTTGCATTTGGT 3174093
Score = 129 bits (142), Expect = 4e-25
Identities = 156/210 (74%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || || || || || || || ||||| ||||| || || || ||
Sbjct 3175253 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCTCG 3175312
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || ||| | || | || | | ||||| || || | || ||||||||
Sbjct 3175313 GACACCATCGAGAATGTCAAGGCTAAGA-TCCAGGACAAGGAGGGCATTCCCCCAGATCA 3175371
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||||| || || |||||||| || ||||| |||| ||| ||||| |||||||||
Sbjct 3175372 GCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGATTACAA 3175431
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819
||| || || |||||||| || ||||| ||
Sbjct 3175432 CATCCAGAAGGAGTCCACCTTGCATTTGGT 3175461
Score = 123 bits (136), Expect = 2e-23
Identities = 155/210 (74%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || || || || || || || || ||||| ||||| || || || ||
Sbjct 3174341 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCTCG 3174400
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || ||| | || | || | | ||||| || || | || ||||||||
Sbjct 3174401 GACACCATCGAGAATGTCAAGGCTAAGA-TCCAGGACAAGGAGGGCATTCCCCCAGATCA 3174459
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||||| || || |||||||| || ||||| |||| ||| ||||| |||||||||
Sbjct 3174460 GCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGATTACAA 3174519
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819
||| || || |||||||| || ||||| ||
Sbjct 3174520 CATCCAGAAGGAGTCCACCTTGCATTTGGT 3174549
Score = 123 bits (136), Expect = 2e-23
Identities = 155/210 (74%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || || || || || || || || ||||| ||||| || || || ||
Sbjct 3174569 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCTCG 3174628
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || ||| | || | || | | ||||| || || | || ||||||||
Sbjct 3174629 GACACCATCGAGAATGTCAAGGCTAAGA-TCCAGGACAAGGAGGGCATTCCCCCAGATCA 3174687
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||||| || || |||||||| || ||||| |||| ||| ||||| |||||||||
Sbjct 3174688 GCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGATTACAA 3174747
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819
||| || || |||||||| || ||||| ||
Sbjct 3174748 CATCCAGAAGGAGTCCACCTTGCATTTGGT 3174777
Score = 120 bits (132), Expect = 2e-22
Identities = 156/213 (73%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || || || || || || || || ||||| ||||| || || || ||
Sbjct 3175709 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCTCG 3175768
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || ||| | || | || | | ||||| || || | || ||||||||
Sbjct 3175769 GACACCATCGAGAATGTCAAGGCTAAGA-TCCAGGACAAGGAGGGCATTCCCCCAGATCA 3175827
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||||| || || |||||||| || ||||| |||| ||| ||||| |||||||||
Sbjct 3175828 GCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGATTACAA 3175887
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTT 23822
||| || || |||||||| || || || || ||
Sbjct 3175888 CATCCAGAAGGAGTCCACTTTGCACTTGGTATT 3175920
>seq4631
Length=7852
Score = 111 bits (122), Expect = 1e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || || ||||| ||||| || || || ||||| || || || | ||
Sbjct 489 ATGCAGATCTTTGTAAAGACCCTAACGGGCAAGACCATAACTCTTGAGGTCGAACCGTCG 548
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|| || | |||| | ||| || || ||||||||||| | || |||||||||
Sbjct 549 GATACCATCGAAAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGATCAA 608
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|||||||| || || || ||||| ||| ||||||| | || || | ||||| |||
Sbjct 609 CAGCGTTTGATCTTCGCTGGCAAGCAATTGGAAGATGGCCGAACACTGTCTGATTATAAC 668
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819
|| || || ||||| || || ||||||||
Sbjct 669 ATTCAGAAGGAGTCTACCTTGCATTTAGT 697
>seq6
Length=9197557
Score = 98.7 bits (108), Expect = 7e-16
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
||||||||||| || || |||||| | || |||||||| ||||| || || || || |
Sbjct 544364 AAAATGCAGATCTTTGTGAAAACCTTGACTGGAAAAACCATCACCCTGGAGGTGGAGCCA 544305
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
| ||||| |||| | | || || || ||||| || || | || |||||
Sbjct 544304 TCCGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGAC 544245
Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787
|| |||||| | || || |||||||| |||||||| || | |||||| | || |||
Sbjct 544244 CAGCAGCGTCTCATCTTCGCCGGCAAGCAACTGGAGGATGGCCGCACTCTTTCGGACTAC 544185
Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGT 23819
||||| || || ||||| || | ||||| ||
Sbjct 544184 AACATCCAGAAGGAGTCGACTCTCCATTTGGT 544153
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337989867633320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |