Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017
65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq12 149 1e-30
seq3 140 8e-28
seq6 122 2e-22
seq4631 107 5e-18
>seq12
Length=1235759
Score = 149 bits (164), Expect = 1e-30
Identities = 162/215 (75%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || | ||| || || || || || |||| ||||| |||| || ||| | |||||
Sbjct 219379 AGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCC 219320
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| || |||||||| || || || || || || ||||| || ||||||||
Sbjct 219319 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 219260
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| ||| ||||||||||| |||| || || || || ||||| |||
Sbjct 219259 TGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTC 219200
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
||||| || | |||||| | ||| | |||||||||
Sbjct 219199 TTGCCAGTGAGAGTTTTCACGAAGATTTGCATTTT 219165
>seq3
Length=12541198
Score = 140 bits (154), Expect = 8e-28
Identities = 155/207 (75%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | || || | ||| | |||||| || || |||| |||||||||| ||||||
Sbjct 3175930 ACGAAGACGCAATACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAATCGGACAAAGT 3175871
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| || || || |||||||| || |||||||| | || || || || || ||||| ||
Sbjct 3175870 ACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCC 3175811
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||||| |||||||| ||| ||| ||||||||||| |||| || || || |
Sbjct 3175810 CTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAG 3175751
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698
||||| |||||||| |||| ||| ||
Sbjct 3175750 GGTGATGGTCTTGCCAGTCAGAGTCTT 3175724
Score = 134 bits (148), Expect = 3e-26
Identities = 148/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576
||||| || || |||| |||||||||| |||||| | || || || |||||||| ||
Sbjct 3175449 GTGGACTCCTTCTGGATGTTGTAATCGGACAAAGTACGTCCGTCCTCCAGCTGCTTGCCG 3175390
Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636
|||||||| | || || || || || ||||| || |||||||| |||||||| |||
Sbjct 3175389 GCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTG 3175330
Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696
||| ||||||||||| |||| || || || | ||||| |||||||| |||| |||
Sbjct 3175329 ACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGAGTC 3175270
Query 225697 TTTATGAACACTTGCAT 225713
|| | ||| | |||||
Sbjct 3175269 TTCACGAAGATCTGCAT 3175253
Score = 131 bits (144), Expect = 4e-25
Identities = 149/200 (75%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576
||||| || || |||| |||||||||| ||| || | || || || |||||||| ||
Sbjct 3174081 GTGGACTCCTTCTGGATGTTGTAATCGGACAAGGTACGTCCGTCCTCCAGCTGCTTGCCG 3174022
Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636
|||||||| | || || || || || ||||| || |||||||| |||||||| |||
Sbjct 3174021 GCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTG 3173962
Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696
||| ||||||||||| |||| || || || | ||||| |||||||| |||| ||
Sbjct 3173961 ACATTCTCGATGGTGTCCGAGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTC 3173902
Query 225697 TTTATGAACACTTGCATTTT 225716
|| | ||| | ||||||||
Sbjct 3173901 TTCACGAAGATCTGCATTTT 3173882
Score = 131 bits (144), Expect = 4e-25
Identities = 138/182 (76%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576
||||| || || |||| |||||||||| |||||| | || || || |||||||| ||
Sbjct 3174537 GTGGACTCCTTCTGGATGTTGTAATCGGACAAAGTACGTCCGTCCTCCAGCTGCTTGCCG 3174478
Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636
|||||||| | || || || || || ||||| || |||||||| |||||||| |||
Sbjct 3174477 GCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTG 3174418
Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696
||| ||||||||||| |||| || || || | ||||| |||||||| |||| |||
Sbjct 3174417 ACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGAGTC 3174358
Query 225697 TT 225698
||
Sbjct 3174357 TT 3174356
Score = 131 bits (144), Expect = 4e-25
Identities = 138/182 (76%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576
||||| || || |||| |||||||||| |||||| | || || || |||||||| ||
Sbjct 3174765 GTGGACTCCTTCTGGATGTTGTAATCGGACAAAGTACGTCCGTCCTCCAGCTGCTTGCCG 3174706
Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636
|||||||| | || || || || || ||||| || |||||||| |||||||| |||
Sbjct 3174705 GCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTG 3174646
Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696
||| ||||||||||| |||| || || || | ||||| |||||||| |||| |||
Sbjct 3174645 ACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGAGTC 3174586
Query 225697 TT 225698
||
Sbjct 3174585 TT 3174584
Score = 131 bits (144), Expect = 4e-25
Identities = 147/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || | |||||| || || || || |||| ||||| |||| |||||| | || ||
Sbjct 3175236 AGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCC 3175177
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| || |||||||| | || || || || || ||||| || ||||||||
Sbjct 3175176 TCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 3175117
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| ||| ||||||||||| |||| || || || | ||||| |||
Sbjct 3175116 TGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGTC 3175057
Query 225682 TTGCCCGTCAAAGTTTT 225698
||||| |||| ||| ||
Sbjct 3175056 TTGCCAGTCAGAGTCTT 3175040
Score = 125 bits (138), Expect = 2e-23
Identities = 137/182 (75%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576
||||| || || |||| ||||| |||| |||||| | || || || |||||||| ||
Sbjct 3174309 GTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCCTCCAGCTGCTTGCCG 3174250
Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636
|||||||| | || || || || || ||||| || |||||||| |||||||| |||
Sbjct 3174249 GCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTG 3174190
Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696
||| ||||||||||| |||| || || || | ||||| |||||||| |||| |||
Sbjct 3174189 ACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATAGTCTTGCCAGTCAGAGTC 3174130
Query 225697 TT 225698
||
Sbjct 3174129 TT 3174128
Score = 125 bits (138), Expect = 2e-23
Identities = 137/182 (75%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576
||||| || || |||| ||||| |||| |||||| | || || || |||||||| ||
Sbjct 3174993 GTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCCTCCAGCTGCTTGCCG 3174934
Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636
|||||||| | || || || || || ||||| || |||||||| |||||||| |||
Sbjct 3174933 GCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTG 3174874
Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696
||| ||||||||||| |||| || || || | ||||| |||||||| |||| |||
Sbjct 3174873 ACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGAGTC 3174814
Query 225697 TT 225698
||
Sbjct 3174813 TT 3174812
Score = 125 bits (138), Expect = 2e-23
Identities = 137/182 (75%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576
||||| || || |||| ||||| |||| |||||| | || || || |||||||| ||
Sbjct 3175677 GTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCCTCCAGCTGCTTGCCG 3175618
Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636
|||||||| | || || || || || ||||| || |||||||| |||||||| |||
Sbjct 3175617 GCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTG 3175558
Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696
||| ||||||||||| |||| || || || | ||||| |||||||| |||| |||
Sbjct 3175557 ACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGAGTC 3175498
Query 225697 TT 225698
||
Sbjct 3175497 TT 3175496
>seq6
Length=9197557
Score = 122 bits (134), Expect = 2e-22
Identities = 160/222 (72%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| || | ||| || | |||||||| || || || |||| ||||| || | | |||
Sbjct 542316 ACGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGT 542375
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| |||||||| |||||||| ||||||||||| || || || ||||| || || || ||
Sbjct 542376 GCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCC 542435
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||||| || ||||| ||||| || |||||||| || | ||| || || |
Sbjct 542436 CTCCTTGTCCTGAATCTTGGCTTTCACGTTCTCAATGGTGTCAGAAGGTTCGACCTCCAG 542495
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| || || || || |||| ||| || | ||| | ||||||
Sbjct 542496 GGTAATAGTTTTTCCAGTCAGAGTCTTCACGAAAATTTGCAT 542537
>seq4631
Length=7852
Score = 107 bits (118), Expect = 5e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576
|| || || || || | || ||||| | || |||| |||||||| | ||||| |||
Sbjct 685 GTAGACTCCTTCTGAATGTTATAATCAGACAGTGTTCGGCCATCTTCCAATTGCTTGCCA 626
Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636
|||||||| | || ||||| || || ||||| ||||| ||||| |||||||| ||
Sbjct 625 GCGAAGATCAAACGCTGTTGATCTGGAGGAATTCCTTCTTTGTCCTGGATCTTGGCTTTG 566
Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696
||| ||||||||| || || | ||| || || | || || ||||||||||| | ||
Sbjct 565 ACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTTATGGTCTTGCCCGTTAGGGTC 506
Query 225697 TTTATGAACACTTGCAT 225713
|||| || | |||||
Sbjct 505 TTTACAAAGATCTGCAT 489
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192458012124260
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