Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq10 163 4e-35 >seq10 Length=19787792 Score = 163 bits (180), Expect = 4e-35 Identities = 444/670 (66%), Gaps = 15/670 (2%) Strand=Plus/Plus Query 48010 CACAATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAG 48069 |||| ||||| || || | || || || || || || || || ||||| || ||||| Sbjct 12207903 CACAGTTCATGCCAATCAAATTGACGGGCAGGGCTTCAGTGAGGAACTCCTGCTCGATTT 12207962 Query 48070 TGACAGCATCCACTATTATC--GATGTTACCGTTTCCTCACTTGGTGGATACAACAAATG 48127 ||||||||| || ||| |||| | | | | || | | || | | || | ||| Sbjct 12207963 CCACAGCATCCCTGATGATCTCGATGATGC-GCTCCCGCT-TGGGCCGCTGCACTAGATG 12208020 Query 48128 TTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTT 48187 | | |||| | ||||| || || ||||||||||| || | || | ||||| Sbjct 12208021 GTGATACATGAGCACCGCAAAGTCGCAGTGAAGACCTTCGTCACGGGAGATCAGCTCGTT 12208080 Query 48188 AGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGA 48247 || || || ||||||||||| || ||||| || || |||||||| || | || |||| Sbjct 12208081 GGAGAAGGTCAGACCGGGCATGAGACCACGCTTCTTCAGCCAAAAGATCGAGGC-AAAGC 12208139 Query 48248 T-CCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGG 48306 | ||| |||||| || ||||| ||||||||||| || ||| | ||| | | ||| Sbjct 12208140 TGCCACTAAAGAAGATTCCTTCCACGGCCGCAAAGGCAATAATACGCTCGGCAAAGTTGG 12208199 Query 48307 C----TTCGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATT 48362 | |||| | |||||| ||||| || ||||| ||||||| ||||| Sbjct 12208200 CCGATTTCGAGGA-TATCCAGGACATGGCCCAGTCCGCCTTGCGCTTTACAGCCGGCATG 12208258 Query 48363 GTTTCTATAGCATTAAAGAGAAAGtttttttCATT--GCTATCTTTAACGTAAGTATCTA 48420 || || |||||||| || | ||| || | ||| | | | ||| || || | Sbjct 12208259 GTCTCAATAGCATTGAACAAGTAGTCGCGCTCCTGCGGCTCCCGT--ATGTAGGTGTCAA 12208316 Query 48421 TTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAAC 48480 | | | || ||||| |||||||| | ||| || || || ||||| || ||||| || | Sbjct 12208317 TGAGCACGCTGTACATCTCGGAGTGCACATTCTCCATGGCTATCTGGAAGCCGTAGAAGC 12208376 Query 48481 ATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTA 48540 | | || ||||||||||| |||||| || ||| || || ||| |||||| || || | Sbjct 12208377 AACGTGCCTCTGTGATCTGCACCTCCTGACTAAAGCGCTCGACCAGATTCTCGTTAACAA 12208436 Query 48541 TTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAG 48600 | || || ||||| || || || | ||||| ||||| || |||||| || Sbjct 12208437 TGCCGTCCGAGGCAGCGAAGAAGGCCAGCACATGGGAGATAAAGTAGCGCTCGTTGTCAG 12208496 Query 48601 TCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATG 48660 | || |||||| | || ||||||| ||| || ||||| | ||||| || | Sbjct 12208497 TGAGACGGGCCCAGTCCGTCGCGTCCTTTGATAGATCCACCTCTTCCACAGTCCAGAAGG 12208556 Query 48661 ATGCCTCTGC 48670 | ||||| || Sbjct 12208557 AGGCCTCCGC 12208566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694627206705600